Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011616

Physical Location & Seq

Genomic Coordinates Forward (+)

18317371 .. 18320063

Gene Structure 2693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0116200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGACAGCTAAAGTGCATATGACAGACTCATCTATGGTGTTGGCCGGCTTCATGATTGTGTCATTAGAATTTGCAAAAGATCAGGCCATTGACTCACAGGTTCAAGTATCTAATTTTTTATCAAGTTTCTTGTCTACCAATTCTTGCCTTTTATTCAAGAGGAACTCGAGGGCGAGTTCTTTCATAGTGGAGGAGAATGATGTAGGACGAGAATGGGCCCGGTTTAGTCGGAAAACCATAAAAGCAAAGAAGCGGCGTAGAATCAAGAAGAGTGATTGGAAAATAAGGTTTATCCCCCGTTACTTCCGACTGCGTCATCTCAGCTCTGTACCTTTTGCATACGCCTTTACCATTAATCCCAATGATGAAGCTGATCCTAATGACCCTGAATTCACAATTCCAATTATTGATATGTCTCTTCTCACCTCCGGTTCACCTGATCAACGCTCCAAGATCATCCAAGACCTTGTCAAAATTTGTCAAGAATGGGGCTTCTTCATTGCGATTAACCATGGAGTGCCAGAGAGCCTAATGAAGGCGATGATCGATTCATGTCATGGATTTTTCAGTCTTCTGGAGAGTGAGAAGCAGGAGGTCAAATCAGGAAATGATGTGCTGGAGATGTTCAAGTACGGGACTAGCTATAATCTTGCATTGGACAAAGTCCTTCTCTGGAGGGACTTCTTCAAGAATGAGATGAAGGGTCTCAAAGTTGAACACAATGGGAAATGGCTCACTGTCGATGGCCCTGCCAATGGTTTTTTTGTTAACCTTGCTGACCAAACGCAGATTCTTACCAATGGAAAGTACAAGAGTGTGATGCACCGAGCAATTGTGAATAACAAAGCTACAAGGATATCTATAGCCGTACCACATGGACCATCTGTAGATACAATTATTGCACCTTCACCAGAATTGTGTGACAGAGAAGGTCAGGCTCCAAAATACCTTGCAATGAACTACAAGGAATACATACAACTTCAACAAAGTGGCAAGAATTACATGAAGTCAACCTTTGATCACATACGAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

344

Amino Acids

39.29

Weight (kDa)

9.24

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	133 - 231	3.4e-22	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	230 - 292	9e-13	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396721 RchiOBHm_Chr5g0040161 RchiOBHm_Chr6g0266481
rosa_laevigata	RLG00000013317 RLG00000023273
rosa_multiflora	Rmu_sc0002723.1_g000038 Rmu_sc0005394.1_g000004
rosa_roxburghii	Rroxscaffold_3G00223570
rosa_rugosa	Rorug01G0150100.1 Rorug04G0116200
rosa_samantha	Rh2CG294500 Rh3DG310500 Rh4AG240800 Rh4BG174500 Rh4BG174600 Rh4BG244000 Rh5DG228500 Rh6AG223000 Rh7AG214700 Rh7AG214800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	1 cut(s)	368
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	3 cut(s)	68, 389, 474
AfaI	GTAC	4 cut(s)	330, 632, 809, 870
AfiI	CCNNNNNNNGG	2 cut(s)	535, 755
AgsI	TTSAA	6 cut(s)	104, 157, 628, 688, 716, 983
AjuI	GAANNNNNNNTTGG	2 cut(s)	774, 806
AluBI	AGCT	5 cut(s)	8, 324, 371, 642, 848
AluI	AGCT	5 cut(s)	8, 324, 371, 642, 848
Alw26I	GTCTC	2 cut(s)	420, 710
AlwI	GGATC	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	4 cut(s)	42, 84, 216, 745
ApaI	GGGCCC	1 cut(s)	220
ApoI	RAATTY	3 cut(s)	68, 389, 474
AseI	ATTAAT	1 cut(s)	354
AspS9I	GGNCC	4 cut(s)	216, 217, 746, 878
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	3 cut(s)	415, 426, 900
AvaI	CYCGRG	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	878
BaeGI	GKGCMC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	563
BccI	CCATC	2 cut(s)	737, 889
BceAI	ACGGC	1 cut(s)	851
BcgI	CGANNNNNNTGC	2 cut(s)	731, 765
BclI	TGATCA	2 cut(s)	439, 1018
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	420, 710
BfaI	CTAG	2 cut(s)	639, 1033
BfmI	CTRYAG	2 cut(s)	861, 885
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	878
BmeT110I	CYCGRG	1 cut(s)	166
BmgT120I	GGNCC	4 cut(s)	216, 217, 746, 878
BmiI	GGNNCC	2 cut(s)	218, 939
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	810
BpiI	GAAGAC	1 cut(s)	563
BpmI	CTGGAG	3 cut(s)	596, 638, 694
BpuMI	CCSGG	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	546
BsaI	GGTCTC	1 cut(s)	710
BsaJI	CCNNGG	1 cut(s)	511
BsaWI	WCCGGW	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	2 cut(s)	535, 755
Bse118I	RCCGGY	1 cut(s)	44
Bse3DI	GCAATG	2 cut(s)	498, 960
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	535, 755
BseMI	GCAATG	2 cut(s)	498, 960
BseMII	CTCAG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	220
BshFI	GGCC	4 cut(s)	44, 86, 218, 747
BshVI	ATCGAT	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	45, 220, 429
BslFI	GGGAC	2 cut(s)	649, 692
BslI	CCNNNNNNNGG	2 cut(s)	535, 755
BsmAI	GTCTC	2 cut(s)	420, 710
BsmFI	GGGAC	2 cut(s)	649, 692
BsnI	GGCC	4 cut(s)	44, 86, 218, 747
Bso31I	GGTCTC	1 cut(s)	710
BsoBI	CYCGRG	1 cut(s)	166
Bsp120I	GGGCCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	6 cut(s)	79, 373, 439, 453, 543, 1018
Bsp19I	CCATGG	1 cut(s)	511
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	4 cut(s)	44, 86, 218, 747
BspCNI	CTCAG	1 cut(s)	333
BspDI	ATCGAT	1 cut(s)	546
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	218, 939
BspPI	GGATC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	710
BsrDI	GCAATG	2 cut(s)	498, 960
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	6 cut(s)	79, 373, 439, 453, 543, 1018
BssT1I	CCWWGG	1 cut(s)	511
Bst4CI	ACNGT	1 cut(s)	739
Bst6I	CTCTTC	2 cut(s)	263, 423
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	511
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstF5I	GGATG	1 cut(s)	456
BstKTI	GATC	6 cut(s)	82, 376, 442, 456, 546, 1021
BstMAI	GTCTC	2 cut(s)	420, 710
BstMBI	GATC	6 cut(s)	79, 373, 439, 453, 543, 1018
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	2 cut(s)	861, 885
BstSLI	GKGCMC	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	563
Bsu15I	ATCGAT	1 cut(s)	546
BsuRI	GGCC	4 cut(s)	44, 86, 218, 747
BsuTUI	ATCGAT	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	511
BtgZI	GCGATG	1 cut(s)	554
BtsCI	GGATG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	1 cut(s)	46
CciI	TCATGA	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	4 cut(s)	216, 217, 746, 878
ClaI	ATCGAT	1 cut(s)	546
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	4 cut(s)	329, 631, 808, 869
CviAII	CATG	6 cut(s)	52, 512, 552, 557, 875, 1003
CviQI	GTAC	4 cut(s)	329, 631, 808, 869
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	6 cut(s)	81, 375, 441, 455, 545, 1020
DpnII	GATC	6 cut(s)	79, 373, 439, 453, 543, 1018
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	263, 423
EarI	CTCTTC	2 cut(s)	263, 423
Eco130I	CCWWGG	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	710
Eco32I	GATATC	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	878
Eco88I	CYCGRG	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	533
EcoRI	GAATTC	1 cut(s)	389
EcoRV	GATATC	1 cut(s)	858
EcoT14I	CCWWGG	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	6 cut(s)	55, 515, 555, 560, 878, 1006
FalI	AAGNNNNNCTT	2 cut(s)	998, 1030
FaqI	GGGAC	2 cut(s)	649, 692
FatI	CATG	6 cut(s)	51, 511, 551, 556, 874, 1002
FauNDI	CATATG	1 cut(s)	18
FbaI	TGATCA	2 cut(s)	439, 1018
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	2 cut(s)	639, 1033
GluI	GCNGC	1 cut(s)	254
GsuI	CTGGAG	3 cut(s)	596, 638, 694
HaeIII	GGCC	4 cut(s)	44, 86, 218, 747
HapII	CCGG	3 cut(s)	45, 220, 429
HgaI	GACGC	1 cut(s)	302
Hin1II	CATG	6 cut(s)	55, 515, 555, 560, 878, 1006
HincII	GTYRAC	2 cut(s)	769, 1011
HindII	GTYRAC	2 cut(s)	769, 1011
HinfI	GANTC	6 cut(s)	26, 92, 261, 548, 790, 1029
HpaI	GTTAAC	1 cut(s)	769
HpaII	CCGG	3 cut(s)	45, 220, 429
HphI	GGTGA	3 cut(s)	415, 426, 900
Hpy166II	GTNNAC	4 cut(s)	135, 434, 769, 1011
Hpy188I	TCNGA	2 cut(s)	231, 308
Hpy188III	TCNNGA	8 cut(s)	52, 157, 265, 482, 575, 603, 673, 688
Hpy8I	GTNNAC	4 cut(s)	135, 434, 769, 1011
HpyAV	CCTTC	5 cut(s)	529, 677, 694, 915, 923
HpyCH4III	ACNGT	1 cut(s)	739
HpyCH4V	TGCA	7 cut(s)	16, 74, 338, 653, 823, 902, 953
HpyF3I	CTNAG	1 cut(s)	320
Hsp92II	CATG	6 cut(s)	55, 515, 555, 560, 878, 1006
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Ksp22I	TGATCA	2 cut(s)	439, 1018
KspAI	GTTAAC	1 cut(s)	769
Kzo9I	GATC	6 cut(s)	79, 373, 439, 453, 543, 1018
LmnI	GCTCC	2 cut(s)	452, 943
LweI	GCATC	1 cut(s)	810
MaeI	CTAG	2 cut(s)	639, 1033
MaeIII	GTNAC	2 cut(s)	299, 920
MalI	GATC	6 cut(s)	81, 375, 441, 455, 545, 1020
MboI	GATC	6 cut(s)	79, 373, 439, 453, 543, 1018
MboII	GAAGA	5 cut(s)	280, 410, 487, 563, 676
MfeI	CAATTG	1 cut(s)	831
MhlI	GDGCHC	1 cut(s)	220
MlyI	GAGTC	2 cut(s)	20, 86
MmeI	TCCRAC	2 cut(s)	209, 331
MnlI	CCTC	6 cut(s)	153, 162, 184, 436, 586, 669
MroNI	GCCGGC	1 cut(s)	44
MseI	TTAA	3 cut(s)	354, 507, 768
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	3 cut(s)	45, 220, 429
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	1 cut(s)	831
NaeI	GCCGGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	220
NcoI	CCATGG	1 cut(s)	511
NdeI	CATATG	1 cut(s)	18
NdeII	GATC	6 cut(s)	79, 373, 439, 453, 543, 1018
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	6 cut(s)	55, 515, 555, 560, 878, 1006
NlaIV	GGNNCC	2 cut(s)	218, 939
NmuCI	GTSAC	1 cut(s)	920
PaeR7I	CTCGAG	1 cut(s)	166
PagI	TCATGA	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	261, 548, 790
PflFI	GACNNNGTC	3 cut(s)	312, 467, 662
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	2 cut(s)	20, 86
PpsI	GAGTC	2 cut(s)	20, 86
PshBI	ATTAAT	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	218, 939
PspOMI	GGGCCC	1 cut(s)	216
PspPI	GGNCC	4 cut(s)	216, 217, 746, 878
PspXI	VCTCGAGB	1 cut(s)	166
PsyI	GACNNNGTC	3 cut(s)	312, 467, 662
RsaI	GTAC	4 cut(s)	330, 632, 809, 870
RsaNI	GTAC	4 cut(s)	329, 631, 808, 869
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	3 cut(s)	354, 507, 768
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	6 cut(s)	79, 373, 439, 453, 543, 1018
Sau96I	GGNCC	4 cut(s)	216, 217, 746, 878
SchI	GAGTC	2 cut(s)	20, 86
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	220
SfaNI	GCATC	1 cut(s)	810
SfcI	CTRYAG	2 cut(s)	861, 885
Sfr274I	CTCGAG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	878
SlaI	CTCGAG	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	2 cut(s)	639, 1033
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	739
TaqI	TCGA	3 cut(s)	167, 546, 741
TatI	WGTACW	1 cut(s)	807
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	3 cut(s)	261, 548, 790
Tru1I	TTAA	3 cut(s)	354, 507, 768
Tru9I	TTAA	3 cut(s)	354, 507, 768
TscAI	CASTG	1 cut(s)	742
TseFI	GTSAC	1 cut(s)	920
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	9 cut(s)	40, 172, 381, 487, 540, 548, 713, 971, 1019
TspRI	CASTG	1 cut(s)	742
Tth111I	GACNNNGTC	3 cut(s)	312, 467, 662
VpaK11BI	GGWCC	1 cut(s)	878
VspI	ATTAAT	1 cut(s)	354
XagI	CCTNNNNNAGG	1 cut(s)	533
XapI	RAATTY	3 cut(s)	68, 389, 474
XhoI	CTCGAG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	134
XspI	CTAG	2 cut(s)	639, 1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.