ATPase family associated with various cellular activities (AAA)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0396721 RchiOBHm_Chr5g0040161 RchiOBHm_Chr6g0266481 |
| rosa_laevigata | RLG00000013317 RLG00000023273 |
| rosa_multiflora | Rmu_sc0002723.1_g000038 Rmu_sc0005394.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00223570 |
| rosa_rugosa | Rorug01G0150100.1 Rorug04G0116200 |
| rosa_samantha | Rh2CG294500 Rh3DG310500 Rh4AG240800 Rh4BG174500 Rh4BG174600 Rh4BG244000 Rh5DG228500 Rh6AG223000 Rh7AG214700 Rh7AG214800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 136 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 137 |
| AccI | GTMKAC | 1 cut(s) | 105 |
| AccII | CGCG | 1 cut(s) | 152 |
| AciI | CCGC | 1 cut(s) | 152 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 137 |
| AgsI | TTSAA | 1 cut(s) | 23 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 118, 150 |
| AluBI | AGCT | 2 cut(s) | 65, 91 |
| AluI | AGCT | 2 cut(s) | 65, 91 |
| Alw21I | GWGCWC | 1 cut(s) | 93 |
| Alw26I | GTCTC | 1 cut(s) | 121 |
| AoxI | GGCC | 1 cut(s) | 26 |
| ApeKI | GCWGC | 1 cut(s) | 142 |
| BanII | GRGCYC | 1 cut(s) | 93 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 35 |
| Bbv12I | GWGCWC | 1 cut(s) | 93 |
| BbvI | GCAGC | 1 cut(s) | 129 |
| BcoDI | GTCTC | 1 cut(s) | 121 |
| BfmI | CTRYAG | 1 cut(s) | 143 |
| BfuAI | ACCTGC | 1 cut(s) | 136 |
| BisI | GCNGC | 1 cut(s) | 143 |
| BlsI | GCNGC | 1 cut(s) | 144 |
| BpmI | CTGGAG | 1 cut(s) | 130 |
| BpuEI | CTTGAG | 1 cut(s) | 18 |
| BsaI | GGTCTC | 1 cut(s) | 121 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 118, 148 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 137 |
| Bse1I | ACTGG | 1 cut(s) | 113 |
| Bse3DI | GCAATG | 1 cut(s) | 158 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 137 |
| BseMI | GCAATG | 1 cut(s) | 158 |
| BseNI | ACTGG | 1 cut(s) | 113 |
| BseXI | GCAGC | 1 cut(s) | 129 |
| Bsh1236I | CGCG | 1 cut(s) | 152 |
| BshFI | GGCC | 1 cut(s) | 28 |
| BsiHKAI | GWGCWC | 1 cut(s) | 93 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 137 |
| BsmAI | GTCTC | 1 cut(s) | 121 |
| BsnI | GGCC | 1 cut(s) | 28 |
| Bso31I | GGTCTC | 1 cut(s) | 121 |
| Bsp1286I | GDGCHC | 1 cut(s) | 93 |
| BspACI | CCGC | 1 cut(s) | 152 |
| BspANI | GGCC | 1 cut(s) | 28 |
| BspFNI | CGCG | 1 cut(s) | 152 |
| BspMAI | CTGCAG | 1 cut(s) | 147 |
| BspMI | ACCTGC | 1 cut(s) | 136 |
| BspTNI | GGTCTC | 1 cut(s) | 121 |
| BsrDI | GCAATG | 1 cut(s) | 158 |
| BsrI | ACTGG | 1 cut(s) | 113 |
| BstFNI | CGCG | 1 cut(s) | 152 |
| BstMAI | GTCTC | 1 cut(s) | 121 |
| BstSFI | CTRYAG | 1 cut(s) | 143 |
| BstUI | CGCG | 1 cut(s) | 152 |
| BstV1I | GCAGC | 1 cut(s) | 129 |
| BsuRI | GGCC | 1 cut(s) | 28 |
| BveI | ACCTGC | 1 cut(s) | 136 |
| CviJI | RGCY | 4 cut(s) | 28, 65, 91, 142 |
| CviKI_1 | RGCY | 4 cut(s) | 28, 65, 91, 142 |
| Ecl136II | GAGCTC | 1 cut(s) | 91 |
| Eco24I | GRGCYC | 1 cut(s) | 93 |
| Eco31I | GGTCTC | 1 cut(s) | 121 |
| Eco53kI | GAGCTC | 1 cut(s) | 91 |
| EcoICRI | GAGCTC | 1 cut(s) | 91 |
| EcoT38I | GRGCYC | 1 cut(s) | 93 |
| FaiI | YATR | 1 cut(s) | 62 |
| FblI | GTMKAC | 1 cut(s) | 105 |
| Fnu4HI | GCNGC | 1 cut(s) | 143 |
| FriOI | GRGCYC | 1 cut(s) | 93 |
| Fsp4HI | GCNGC | 1 cut(s) | 143 |
| GluI | GCNGC | 1 cut(s) | 143 |
| GsuI | CTGGAG | 1 cut(s) | 130 |
| HaeIII | GGCC | 1 cut(s) | 28 |
| Hpy166II | GTNNAC | 2 cut(s) | 106, 120 |
| Hpy8I | GTNNAC | 2 cut(s) | 106, 120 |
| HpyAV | CCTTC | 1 cut(s) | 175 |
| HpyCH4V | TGCA | 1 cut(s) | 145 |
| LpnPI | CCDG | 3 cut(s) | 94, 123, 131 |
| Lsp1109I | GCAGC | 1 cut(s) | 129 |
| MaeIII | GTNAC | 1 cut(s) | 154 |
| MboII | GAAGA | 2 cut(s) | 11, 61 |
| MhlI | GDGCHC | 1 cut(s) | 93 |
| MvnI | CGCG | 1 cut(s) | 152 |
| NmuCI | GTSAC | 1 cut(s) | 154 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 137 |
| PkrI | GCNGC | 1 cut(s) | 144 |
| Psp124BI | GAGCTC | 1 cut(s) | 93 |
| PstI | CTGCAG | 1 cut(s) | 147 |
| SacI | GAGCTC | 1 cut(s) | 93 |
| SatI | GCNGC | 1 cut(s) | 143 |
| SduI | GDGCHC | 1 cut(s) | 93 |
| SetI | ASST | 3 cut(s) | 67, 93, 150 |
| SfcI | CTRYAG | 1 cut(s) | 143 |
| SgeI | CNNG | 7 cut(s) | 47, 121, 135, 144, 150, 158, 163 |
| SmlI | CTYRAG | 1 cut(s) | 33 |
| SmoI | CTYRAG | 1 cut(s) | 33 |
| SsiI | CCGC | 1 cut(s) | 152 |
| SstI | GAGCTC | 1 cut(s) | 93 |
| TseFI | GTSAC | 1 cut(s) | 154 |
| TseI | GCWGC | 1 cut(s) | 142 |
| Tsp45I | GTSAC | 1 cut(s) | 154 |
| TspDTI | ATGAA | 1 cut(s) | 5 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 137 |
| XmiI | GTMKAC | 1 cut(s) | 105 |