Rh3DG310500

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011616
Physical Location & Seq
Forward (+)
33359231 .. 33360612
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG310500.1

Sequence Viewer

Length: 516 bp
ATGATAACAGCATCCTCACCGGAACCTAAACCTAAGAATCTGCTGCTTGATAAGAAACAACAAAGCCTCAAGATCGGCAATGGGATCAGTCAGTCTTTCGCTTTCTTCTACGAGTCTTTTGTGTCGGAGGTTTTGCTTGGATTCGCAGATTACTCGACTCCGAAGGACATTTGGGCCGTCAGTTGCATCTTCGTGGTGGGATTACATGGTGACTCTAAAGTGAGAGCAGTATATTTAGGAGGGTGGTTGGTAGTGGAAGGTTGGATCAAGCCTTCACTTTTTGATGGCATTCCCAATGGAGATATGCTTGATGGAACAGTGGTACAACTAAAGTCGGTAACTTTGGATAAGTATGTCTTTGCAGAAAATGGGGGAGGGGCCAATGTCTCTGTTAGTAGAGATGTTGCATCTTCATGGGAAACGCTGAGGAAATATGAACAGATATTCAGACATAACCTACTAATTGGTTTCTCAGTATTAGTAAGCCGCTGTTCATTTTTTGGTGATGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cellulase Fascin

Protein Analysis

171

Amino Acids

18.87

Weight (kDa)

6.11

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7910 PF25490 99 - 144 3.5e-16 Domain of unknown function (DUF7910)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 487
AclWI GGATC 2 cut(s) 92, 272
AfaI GTAC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 2 cut(s) 92, 272
AoxI GGCC 2 cut(s) 174, 378
ApeKI GCWGC 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 174, 378
AsuHPI GGTGA 3 cut(s) 9, 221, 515
BbvCI CCTCAGC 1 cut(s) 425
BbvI GCAGC 1 cut(s) 30
BccI CCATC 2 cut(s) 278, 305
BceAI ACGGC 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 135, 169
BcoDI GTCTC 1 cut(s) 391
BisI GCNGC 2 cut(s) 44, 487
BlsI GCNGC 2 cut(s) 45, 488
BmgT120I GGNCC 2 cut(s) 174, 378
BmiI GGNNCC 2 cut(s) 24, 379
BmsI GCATC 3 cut(s) 20, 195, 416
Bpu10I CCTNAGC 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 85
BseGI GGATG 1 cut(s) 11
BseMI GCAATG 1 cut(s) 85
BseMII CTCAG 2 cut(s) 416, 486
BseXI GCAGC 1 cut(s) 30
BshFI GGCC 2 cut(s) 176, 380
BsiSI CCGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 391
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 2 cut(s) 176, 380
Bsp143I GATC 3 cut(s) 72, 84, 264
BspACI CCGC 1 cut(s) 487
BspANI GGCC 2 cut(s) 176, 380
BspCNI CTCAG 2 cut(s) 417, 485
BspLI GGNNCC 2 cut(s) 24, 379
BspPI GGATC 2 cut(s) 92, 272
BsrDI GCAATG 1 cut(s) 85
BssMI GATC 3 cut(s) 72, 84, 264
Bst4CI ACNGT 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 33, 425, 472
BstF5I GGATG 1 cut(s) 11
BstKTI GATC 3 cut(s) 75, 87, 267
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 3 cut(s) 72, 84, 264
BstV1I GCAGC 1 cut(s) 30
BsuRI GGCC 2 cut(s) 176, 380
BtsCI GGATG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 174, 378
Csp6I GTAC 1 cut(s) 323
CviAII CATG 2 cut(s) 206, 414
CviJI RGCY 5 cut(s) 66, 176, 271, 380, 486
CviKI_1 RGCY 5 cut(s) 66, 176, 271, 380, 486
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 3 cut(s) 33, 425, 472
DpnI GATC 3 cut(s) 74, 86, 266
DpnII GATC 3 cut(s) 72, 84, 264
FaeI CATG 2 cut(s) 209, 417
FaiI YATR 7 cut(s) 207, 232, 305, 354, 415, 435, 453
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FatI CATG 2 cut(s) 205, 413
Fnu4HI GCNGC 2 cut(s) 44, 487
Fsp4HI GCNGC 2 cut(s) 44, 487
GluI GCNGC 2 cut(s) 44, 487
HaeIII GGCC 2 cut(s) 176, 380
HapII CCGG 1 cut(s) 20
Hin1II CATG 2 cut(s) 209, 417
HinfI GANTC 5 cut(s) 37, 113, 141, 157, 212
HpaII CCGG 1 cut(s) 20
HphI GGTGA 3 cut(s) 9, 221, 515
Hpy188I TCNGA 3 cut(s) 127, 162, 449
Hpy188III TCNNGA 1 cut(s) 70
HpyAV CCTTC 3 cut(s) 157, 251, 282
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 186, 362, 407
HpyF3I CTNAG 3 cut(s) 33, 425, 472
Hsp92II CATG 2 cut(s) 209, 417
Kzo9I GATC 3 cut(s) 72, 84, 264
LpnPI CCDG 1 cut(s) 33
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 3 cut(s) 20, 195, 416
MaeIII GTNAC 2 cut(s) 209, 337
MalI GATC 3 cut(s) 74, 86, 266
MboI GATC 3 cut(s) 72, 84, 264
MboII GAAGA 3 cut(s) 97, 181, 402
MluCI AATT 1 cut(s) 462
MlyI GAGTC 3 cut(s) 122, 151, 206
MmeI TCCRAC 2 cut(s) 105, 242
MnlI CCTC 6 cut(s) 25, 77, 121, 233, 368, 420
MslI CAYNNNNRTG 2 cut(s) 191, 412
MspA1I CMGCKG 1 cut(s) 489
MspI CCGG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 288
NdeII GATC 3 cut(s) 72, 84, 264
NlaIII CATG 2 cut(s) 209, 417
NlaIV GGNNCC 2 cut(s) 24, 379
NmuCI GTSAC 1 cut(s) 209
PctI GAATGC 1 cut(s) 288
PfeI GAWTC 2 cut(s) 37, 141
PkrI GCNGC 2 cut(s) 45, 488
PleI GAGTC 3 cut(s) 121, 151, 206
PpsI GAGTC 3 cut(s) 121, 151, 206
PspN4I GGNNCC 2 cut(s) 24, 379
PspPI GGNCC 2 cut(s) 174, 378
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
RseI CAYNNNNRTG 2 cut(s) 191, 412
SatI GCNGC 2 cut(s) 44, 487
Sau3AI GATC 3 cut(s) 72, 84, 264
Sau96I GGNCC 2 cut(s) 174, 378
SchI GAGTC 3 cut(s) 122, 151, 206
SetI ASST 5 cut(s) 28, 34, 132, 262, 459
SfaNI GCATC 3 cut(s) 20, 195, 416
SmiMI CAYNNNNRTG 2 cut(s) 191, 412
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 1 cut(s) 462
SsiI CCGC 1 cut(s) 487
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 155
TasI AATT 1 cut(s) 462
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 2 cut(s) 37, 141
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 3 cut(s) 402, 450, 483
TspRI CASTG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.