Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011616

Physical Location & Seq

Genomic Coordinates Reverse (-)

41006757 .. 41026627

Gene Structure 19871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG244000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGATCTCGTTCTCCGCCGCAGAGACTTGTCCCTCATCCTCAGATCTCTGCCTCTCAGCGGCCCAAACTCGAATAGATCATCTCCATTTTCCTCGTTGACAGCTTGCAACGGCGCCTGGGGCTTTTCCAGGTGGGTGGAGAGCTTCATGGGCCAGATCTTTCCATTCAAGAACAGCTCATCTGCTGAGCTCATCGGCCAGGTTGCAGTAGATCCATTCGACCCGAATCGAGCTGAGAACTCGAACTCCGACGTCGCCGTATCAAACGAAGAAGAGTTGGATGGGGTTGTATTGATGGCTACTACTGGAAATCTCAAGCAAATTGATGATGCCTTAAAGCGGCCTGGTCGCATGGATAGAGTATTTCATCTTCAAAGGCCAACTCAAGCAGAAAGGGAGAAGATACTACACATAGCTGCAAAAGAAACAATGGATAATGAGCTCATTGATTTTGTAGACTGGAGAAAGCTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

158

Amino Acids

17.75

Weight (kDa)

5.42

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396721 RchiOBHm_Chr5g0040161 RchiOBHm_Chr6g0266481
rosa_laevigata	RLG00000013317 RLG00000023273
rosa_multiflora	Rmu_sc0002723.1_g000038 Rmu_sc0005394.1_g000004
rosa_roxburghii	Rroxscaffold_3G00223570
rosa_rugosa	Rorug01G0150100.1 Rorug04G0116200
rosa_samantha	Rh2CG294500 Rh3DG310500 Rh4AG240800 Rh4BG174500 Rh4BG174600 Rh4BG244000 Rh5DG228500 Rh6AG223000 Rh7AG214700 Rh7AG214800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	4 cut(s)	16, 19, 60, 340
AclWI	GGATC	2 cut(s)	12, 206
AcoI	YGGCCR	1 cut(s)	196
AcyI	GRCGYC	2 cut(s)	114, 252
AfiI	CCNNNNNNNGG	2 cut(s)	59, 339
AgsI	TTSAA	2 cut(s)	169, 374
AjnI	CCWGG	4 cut(s)	116, 128, 198, 343
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	9 cut(s)	104, 144, 177, 190, 233, 416, 442, 469, 474
AluI	AGCT	9 cut(s)	104, 144, 177, 190, 233, 416, 442, 469, 474
Alw21I	GWGCWC	2 cut(s)	192, 444
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	12, 206
AoxI	GGCC	5 cut(s)	61, 151, 196, 341, 377
ApeKI	GCWGC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	62, 151
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	192, 444
BarI	GAAGNNNNNNTAC	2 cut(s)	354, 386
Bbv12I	GWGCWC	2 cut(s)	192, 444
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	2 cut(s)	275, 289
BceAI	ACGGC	2 cut(s)	127, 242
BciT130I	CCWGG	4 cut(s)	118, 130, 200, 345
BcoDI	GTCTC	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	117
BglII	AGATCT	2 cut(s)	44, 156
BisI	GCNGC	4 cut(s)	19, 61, 341, 417
BlpI	GCTNAGC	2 cut(s)	186, 470
BlsI	GCNGC	4 cut(s)	20, 62, 342, 418
Bme1390I	CCNGG	4 cut(s)	118, 130, 200, 345
BmgT120I	GGNCC	2 cut(s)	62, 151
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	4 cut(s)	118, 130, 200, 345
BmsI	GCATC	1 cut(s)	319
Bpu1102I	GCTNAGC	2 cut(s)	186, 470
BpuEI	CTTGAG	2 cut(s)	299, 369
BsaHI	GRCGYC	2 cut(s)	114, 252
BsaJI	CCNNGG	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 339
Bse1I	ACTGG	2 cut(s)	310, 464
BseBI	CCWGG	4 cut(s)	118, 130, 200, 345
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	36, 286
BseLI	CCNNNNNNNGG	2 cut(s)	59, 339
BseMII	CTCAG	4 cut(s)	55, 70, 177, 225
BseNI	ACTGG	2 cut(s)	310, 464
BseXI	GCAGC	1 cut(s)	403
BshFI	GGCC	5 cut(s)	63, 153, 198, 343, 379
BshNI	GGYRCC	1 cut(s)	113
BsiHKAI	GWGCWC	2 cut(s)	192, 444
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	59, 339
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	16
BsnI	GGCC	5 cut(s)	63, 153, 198, 343, 379
Bsp1286I	GDGCHC	2 cut(s)	192, 444
Bsp143I	GATC	5 cut(s)	4, 44, 77, 156, 211
Bsp1720I	GCTNAGC	2 cut(s)	186, 470
BspACI	CCGC	4 cut(s)	16, 19, 60, 340
BspANI	GGCC	5 cut(s)	63, 153, 198, 343, 379
BspCNI	CTCAG	4 cut(s)	54, 69, 178, 226
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	2 cut(s)	12, 206
BspT107I	GGYRCC	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	310, 464
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	5 cut(s)	4, 44, 77, 156, 211
BssNI	GRCGYC	2 cut(s)	114, 252
Bst2UI	CCWGG	4 cut(s)	118, 130, 200, 345
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	2 cut(s)	114, 252
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	5 cut(s)	41, 56, 186, 234, 470
BstF5I	GGATG	2 cut(s)	36, 286
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	5 cut(s)	7, 47, 80, 159, 214
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	5 cut(s)	4, 44, 77, 156, 211
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 150
BstNI	CCWGG	4 cut(s)	118, 130, 200, 345
BstSCI	CCNGG	4 cut(s)	116, 128, 198, 343
BstV1I	GCAGC	1 cut(s)	403
BstX2I	RGATCY	4 cut(s)	4, 44, 156, 211
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	4 cut(s)	4, 44, 156, 211
BsuRI	GGCC	5 cut(s)	63, 153, 198, 343, 379
BtsCI	GGATG	2 cut(s)	36, 286
Cac8I	GCNNGC	1 cut(s)	106
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	62, 151
CviAII	CATG	2 cut(s)	148, 352
DdeI	CTNAG	5 cut(s)	41, 56, 186, 234, 470
DinI	GGCGCC	1 cut(s)	115
DpnI	GATC	5 cut(s)	6, 46, 79, 158, 213
DpnII	GATC	5 cut(s)	4, 44, 77, 156, 211
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	5
Ecl136II	GAGCTC	2 cut(s)	190, 442
Eco24I	GRGCYC	2 cut(s)	192, 444
Eco53kI	GAGCTC	2 cut(s)	190, 442
EcoICRI	GAGCTC	2 cut(s)	190, 442
EcoRII	CCWGG	4 cut(s)	116, 128, 198, 343
EcoT38I	GRGCYC	2 cut(s)	192, 444
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
FaeI	CATG	2 cut(s)	151, 355
FaiI	YATR	3 cut(s)	149, 353, 413
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	2 cut(s)	147, 351
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	4 cut(s)	19, 61, 341, 417
FokI	GGATG	2 cut(s)	23, 293
FriOI	GRGCYC	2 cut(s)	192, 444
Fsp4HI	GCNGC	4 cut(s)	19, 61, 341, 417
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	4 cut(s)	19, 61, 341, 417
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	5 cut(s)	63, 153, 198, 343, 379
HhaI	GCGC	1 cut(s)	116
Hin1I	GRCGYC	2 cut(s)	114, 252
Hin1II	CATG	2 cut(s)	151, 355
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	1 cut(s)	226
Hpy166II	GTNNAC	2 cut(s)	99, 457
Hpy188I	TCNGA	2 cut(s)	44, 250
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	2 cut(s)	99, 457
Hpy99I	CGWCG	2 cut(s)	254, 257
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	3 cut(s)	108, 206, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 150
HpyF3I	CTNAG	5 cut(s)	41, 56, 186, 234, 470
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	2 cut(s)	114, 252
Hsp92II	CATG	2 cut(s)	151, 355
HspAI	GCGC	1 cut(s)	114
KasI	GGCGCC	1 cut(s)	113
Kzo9I	GATC	5 cut(s)	4, 44, 77, 156, 211
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	319
MaeII	ACGT	1 cut(s)	252
MalI	GATC	5 cut(s)	6, 46, 79, 158, 213
MboI	GATC	5 cut(s)	4, 44, 77, 156, 211
MboII	GAAGA	4 cut(s)	281, 284, 362, 412
MflI	RGATCY	4 cut(s)	4, 44, 156, 211
MhlI	GDGCHC	2 cut(s)	192, 444
MluCI	AATT	1 cut(s)	321
Mly113I	GGCGCC	1 cut(s)	114
MmeI	TCCRAC	2 cut(s)	258, 273
MnlI	CCTC	4 cut(s)	44, 50, 63, 103
MseI	TTAA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	60
MspR9I	CCNGG	4 cut(s)	118, 130, 200, 345
MvaI	CCWGG	4 cut(s)	118, 130, 200, 345
MwoI	GCNNNNNNNGC	2 cut(s)	120, 150
NarI	GGCGCC	1 cut(s)	114
NdeII	GATC	5 cut(s)	4, 44, 77, 156, 211
NlaIII	CATG	2 cut(s)	151, 355
NlaIV	GGNNCC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	4 cut(s)	20, 62, 342, 418
PluTI	GGCGCC	1 cut(s)	117
Psp124BI	GAGCTC	2 cut(s)	192, 444
Psp6I	CCWGG	4 cut(s)	116, 128, 198, 343
PspGI	CCWGG	4 cut(s)	116, 128, 198, 343
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	2 cut(s)	62, 151
PsuI	RGATCY	4 cut(s)	4, 44, 156, 211
SacI	GAGCTC	2 cut(s)	192, 444
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	4 cut(s)	19, 61, 341, 417
Sau3AI	GATC	5 cut(s)	4, 44, 77, 156, 211
Sau96I	GGNCC	2 cut(s)	62, 151
ScrFI	CCNGG	4 cut(s)	118, 130, 200, 345
SduI	GDGCHC	2 cut(s)	192, 444
SfaNI	GCATC	1 cut(s)	319
SfoI	GGCGCC	1 cut(s)	115
SmlI	CTYRAG	2 cut(s)	314, 384
SmoI	CTYRAG	2 cut(s)	314, 384
Sse9I	AATT	1 cut(s)	321
SsiI	CCGC	4 cut(s)	16, 19, 60, 340
SspDI	GGCGCC	1 cut(s)	113
SstI	GAGCTC	2 cut(s)	192, 444
StyD4I	CCNGG	4 cut(s)	116, 128, 198, 343
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	4 cut(s)	71, 219, 229, 242
TasI	AATT	1 cut(s)	321
TauI	GCSGC	3 cut(s)	21, 63, 343
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TseI	GCWGC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	136, 356
XmiI	GTMKAC	1 cut(s)	456
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.