Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011616

Physical Location & Seq

Genomic Coordinates Forward (+)

29743269 .. 29744459

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013317

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGATGTCAAGGTTTTCGAGGTATTACAACTCAAACAAGGGGGACTTAAAGAAGTTGACGCTTATGAATCTGAAGAGAATCCAAGACCAAGATAAAGAATATATTTATTCAACTCCTACTATGACCGAAGGATCCATGGCCATCAAACTATTGGATGCCTGGTTTGAGAAACAAGATGGGGTTGTATTGATGGCTACTATTGGAAATCTCAAGCAACTTGATGATGCCTTAAAGTGGCCTGGTCGCATGGATAGAGTATTTCATCTTCAAGGGCCAACTCAAGCAGAAAGGGAGAAGATACTACACATAGCTGCAAAAGAAACGATGGATAATGAGCTCATTGATTTTGTAGACTGGAGAAAGGTAAAATGTGAGGATGGTTGCTGCAGCTGTCAGTTTTCTCATTGCATTGTGGTTGTTATATATGTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

145

Amino Acids

16.75

Weight (kDa)

6.81

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396721 RchiOBHm_Chr5g0040161 RchiOBHm_Chr6g0266481
rosa_laevigata	RLG00000013317 RLG00000023273
rosa_multiflora	Rmu_sc0002723.1_g000038 Rmu_sc0005394.1_g000004
rosa_roxburghii	Rroxscaffold_3G00223570
rosa_rugosa	Rorug01G0150100.1 Rorug04G0116200
rosa_samantha	Rh2CG294500 Rh3DG310500 Rh4AG240800 Rh4BG174500 Rh4BG174600 Rh4BG244000 Rh5DG228500 Rh6AG223000 Rh7AG214700 Rh7AG214800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AclWI	GGATC	2 cut(s)	126, 139
AcoI	YGGCCR	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	2 cut(s)	111, 269
AjnI	CCWGG	2 cut(s)	158, 238
AluBI	AGCT	3 cut(s)	311, 337, 390
AluI	AGCT	3 cut(s)	311, 337, 390
Alw21I	GWGCWC	1 cut(s)	339
AlwI	GGATC	2 cut(s)	126, 139
AoxI	GGCC	3 cut(s)	138, 236, 272
ApeKI	GCWGC	3 cut(s)	311, 384, 387
AspS9I	GGNCC	1 cut(s)	272
BalI	TGGCCA	1 cut(s)	140
BamHI	GGATCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	339
BarI	GAAGNNNNNNTAC	2 cut(s)	249, 281
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	3 cut(s)	298, 371, 399
BccI	CCATC	5 cut(s)	149, 170, 184, 319, 371
BciT130I	CCWGG	2 cut(s)	160, 240
BfmI	CTRYAG	1 cut(s)	385
BisI	GCNGC	3 cut(s)	312, 385, 388
BlsI	GCNGC	3 cut(s)	313, 386, 389
Bme1390I	CCNGG	2 cut(s)	160, 240
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	160, 240
BmsI	GCATC	2 cut(s)	145, 214
BpmI	CTGGAG	1 cut(s)	376
BpuEI	CTTGAG	2 cut(s)	194, 264
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	160, 240
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	160, 382
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	403
BseNI	ACTGG	1 cut(s)	359
BseXI	GCAGC	3 cut(s)	298, 371, 399
BshFI	GGCC	3 cut(s)	140, 238, 274
BsiHKAI	GWGCWC	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	3 cut(s)	140, 238, 274
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	131
Bsp19I	CCATGG	1 cut(s)	135
BspANI	GGCC	3 cut(s)	140, 238, 274
BspLI	GGNNCC	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	389
BspPI	GGATC	2 cut(s)	126, 139
BsrDI	GCAATG	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	160, 240
Bst6I	CTCTTC	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	160, 382
BstKTI	GATC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	131
BstNI	CCWGG	2 cut(s)	160, 240
BstSCI	CCNGG	2 cut(s)	158, 238
BstSFI	CTRYAG	1 cut(s)	385
BstV1I	GCAGC	3 cut(s)	298, 371, 399
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	3 cut(s)	140, 238, 274
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	160, 382
Cfr13I	GGNCC	1 cut(s)	272
CseI	GACGC	1 cut(s)	67
CviAII	CATG	2 cut(s)	136, 247
CviJI	RGCY	7 cut(s)	140, 194, 238, 274, 311, 337, 390
CviKI_1	RGCY	7 cut(s)	140, 194, 238, 274, 311, 337, 390
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	339
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	337
EcoRII	CCWGG	2 cut(s)	158, 238
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	139, 250
FaiI	YATR	9 cut(s)	65, 102, 122, 137, 248, 308, 422, 424, 426
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	2 cut(s)	135, 246
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	312, 385, 388
FokI	GGATG	2 cut(s)	167, 389
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	3 cut(s)	312, 385, 388
GluI	GCNGC	3 cut(s)	312, 385, 388
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	3 cut(s)	140, 238, 274
HgaI	GACGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	139, 250
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	2 cut(s)	67, 78
Hpy166II	GTNNAC	2 cut(s)	57, 352
Hpy188I	TCNGA	2 cut(s)	72, 434
Hpy8I	GTNNAC	2 cut(s)	57, 352
HpyAV	CCTTC	1 cut(s)	122
HpyCH4V	TGCA	3 cut(s)	314, 387, 408
Hsp92II	CATG	2 cut(s)	139, 250
Kzo9I	GATC	1 cut(s)	131
LpnPI	CCDG	5 cut(s)	145, 172, 225, 252, 340
Lsp1109I	GCAGC	3 cut(s)	298, 371, 399
LweI	GCATC	2 cut(s)	145, 214
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	3 cut(s)	85, 257, 307
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	339
MlsI	TGGCCA	1 cut(s)	140
MluNI	TGGCCA	1 cut(s)	140
MnlI	CCTC	2 cut(s)	12, 367
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	2 cut(s)	47, 230
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	390
MspR9I	CCNGG	2 cut(s)	160, 240
MvaI	CCWGG	2 cut(s)	160, 240
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	2 cut(s)	139, 250
NlaIV	GGNNCC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	67, 78
PkrI	GCNGC	3 cut(s)	313, 386, 389
Psp124BI	GAGCTC	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	158, 238
PspGI	CCWGG	2 cut(s)	158, 238
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	390
SacI	GAGCTC	1 cut(s)	339
SaqAI	TTAA	2 cut(s)	47, 230
SatI	GCNGC	3 cut(s)	312, 385, 388
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	272
ScrFI	CCNGG	2 cut(s)	160, 240
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	6 cut(s)	14, 23, 313, 339, 366, 392
SfaNI	GCATC	2 cut(s)	145, 214
SfcI	CTRYAG	1 cut(s)	385
SmlI	CTYRAG	2 cut(s)	209, 279
SmoI	CTYRAG	2 cut(s)	209, 279
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	158, 238
StyI	CCWWGG	1 cut(s)	135
TaqI	TCGA	1 cut(s)	17
TaqII	GACCGA	1 cut(s)	140
TfiI	GAWTC	2 cut(s)	67, 78
Tru1I	TTAA	2 cut(s)	47, 230
Tru9I	TTAA	2 cut(s)	47, 230
TseI	GCWGC	3 cut(s)	311, 384, 387
TspDTI	ATGAA	2 cut(s)	80, 251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.