Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011616

Physical Location & Seq

Genomic Coordinates Reverse (-)

54650685 .. 54653427

Gene Structure 2743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG240800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGCTACTACTGGAAATCTCAAGCAAATTGATGATGCCTTAAAGCGGCCTGGTCGCATGGATAGAGTATTTCATCTTCAAAGGCCAACTCAAGCAGAAAGGGAGAAGATACTACACATAGCTGCAAAAGAAACAATGGATAATGAGCTCATTGATTTTGTAGACTGGAGAAAGAGTGTAGCAAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

63

Amino Acids

7.34

Weight (kDa)

6.72

Isoelectric Point (pI)

29.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396721 RchiOBHm_Chr5g0040161 RchiOBHm_Chr6g0266481
rosa_laevigata	RLG00000013317 RLG00000023273
rosa_multiflora	Rmu_sc0002723.1_g000038 Rmu_sc0005394.1_g000004
rosa_roxburghii	Rroxscaffold_3G00223570
rosa_rugosa	Rorug01G0150100.1 Rorug04G0116200
rosa_samantha	Rh2CG294500 Rh3DG310500 Rh4AG240800 Rh4BG174500 Rh4BG174600 Rh4BG244000 Rh5DG228500 Rh6AG223000 Rh7AG214700 Rh7AG214800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	2 cut(s)	122, 148
AluI	AGCT	2 cut(s)	122, 148
Alw21I	GWGCWC	1 cut(s)	150
AoxI	GGCC	2 cut(s)	47, 83
ApeKI	GCWGC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	150
BarI	GAAGNNNNNNTAC	2 cut(s)	60, 92
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	51
BisI	GCNGC	2 cut(s)	47, 123
BlsI	GCNGC	2 cut(s)	48, 124
Bme1390I	CCNGG	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	187
BpuEI	CTTGAG	2 cut(s)	5, 75
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	16, 170
BseBI	CCWGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	16, 170
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	2 cut(s)	49, 85
BsiHKAI	GWGCWC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	45
BsnI	GGCC	2 cut(s)	49, 85
Bsp1286I	GDGCHC	1 cut(s)	150
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	2 cut(s)	49, 85
BsrI	ACTGG	2 cut(s)	16, 170
Bst2UI	CCWGG	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	49, 85
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	5 cut(s)	5, 49, 85, 122, 148
CviKI_1	RGCY	5 cut(s)	5, 49, 85, 122, 148
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	1 cut(s)	61
FaiI	YATR	2 cut(s)	59, 119
FatI	CATG	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	47, 123
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	47, 123
GluI	GCNGC	2 cut(s)	47, 123
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	49, 85
Hin1II	CATG	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	61
LpnPI	CCDG	3 cut(s)	36, 63, 151
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	25
MboII	GAAGA	2 cut(s)	68, 118
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	1 cut(s)	27
MseI	TTAA	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
NlaIII	CATG	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	48, 124
Psp124BI	GAGCTC	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	2 cut(s)	47, 123
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	2 cut(s)	124, 150
SfaNI	GCATC	1 cut(s)	25
SgeI	CNNG	7 cut(s)	24, 34, 62, 63, 70, 104, 178
SmlI	CTYRAG	2 cut(s)	20, 90
SmoI	CTYRAG	2 cut(s)	20, 90
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	46
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	49
TasI	AATT	1 cut(s)	27
TauI	GCSGC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	62
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.