Rh7AG214800

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011616
Physical Location & Seq
Reverse (-)
19868940 .. 19879127
10188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG214800.1

Sequence Viewer

Length: 333 bp
ATGGTGGTGGGATTACATGGTGACTCTAAAGTGAGAGCAGTATATTTGGGAGGGTGGTTGGTAGTGGAAGGTTGGATCAAGCCTTCACTTTTTGATGGCATTCCCAATGGAGATATGCTTGATGGAACAGTGGTACAACTAAAGTCGGTAACTTTGGATAAGTATGTCTTTGCAGAAAATGGGGGAGGGGCCAATGTCTCTGTTAGTAGAGATGTTGCATCTTCATGGGAAACGCTGAGGGTAAGATGCTCAATCAATGGTTCCAATTTTTTATTGGTTGTTAGCCGATTATTTGGAATTGAAGGATCTGCCACTATACTCAACAGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cellulase Fascin

Protein Analysis

110

Amino Acids

11.76

Weight (kDa)

6.55

Isoelectric Point (pI)

18.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7910 PF25490 36 - 94 1.4e-17 Domain of unknown function (DUF7910)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 83, 313
AfaI GTAC 1 cut(s) 135
AgsI TTSAA 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 2 cut(s) 83, 313
AoxI GGCC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 236
BccI CCATC 2 cut(s) 89, 116
BcoDI GTCTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 190, 262
BmsI GCATC 2 cut(s) 227, 236
Bpu10I CCTNAGC 1 cut(s) 236
BseMII CTCAG 1 cut(s) 227
BshFI GGCC 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 1 cut(s) 191
Bsp143I GATC 2 cut(s) 75, 305
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 228
BspLI GGNNCC 2 cut(s) 190, 262
BspPI GGATC 2 cut(s) 83, 313
BssMI GATC 2 cut(s) 75, 305
Bst4CI ACNGT 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 236
BstKTI GATC 2 cut(s) 78, 308
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 2 cut(s) 75, 305
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BsuRI GGCC 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 134
CviAII CATG 3 cut(s) 17, 225, 330
CviJI RGCY 3 cut(s) 82, 191, 285
CviKI_1 RGCY 3 cut(s) 82, 191, 285
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 236
DpnI GATC 2 cut(s) 77, 307
DpnII GATC 2 cut(s) 75, 305
FaeI CATG 3 cut(s) 20, 228, 333
FaiI YATR 7 cut(s) 18, 43, 116, 165, 226, 317, 331
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 3 cut(s) 16, 224, 329
HaeIII GGCC 1 cut(s) 191
Hin1II CATG 3 cut(s) 20, 228, 333
HinfI GANTC 1 cut(s) 23
HphI GGTGA 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 62, 93, 296
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 173, 218
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 3 cut(s) 20, 228, 333
Kzo9I GATC 2 cut(s) 75, 305
LpnPI CCDG 1 cut(s) 310
LweI GCATC 2 cut(s) 227, 236
MaeIII GTNAC 2 cut(s) 20, 148
MalI GATC 2 cut(s) 77, 307
MboI GATC 2 cut(s) 75, 305
MboII GAAGA 1 cut(s) 213
MflI RGATCY 1 cut(s) 305
MluCI AATT 2 cut(s) 265, 297
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 3 cut(s) 44, 179, 231
MslI CAYNNNNRTG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 99
NdeII GATC 2 cut(s) 75, 305
NlaIII CATG 3 cut(s) 20, 228, 333
NlaIV GGNNCC 2 cut(s) 190, 262
NmuCI GTSAC 1 cut(s) 20
PctI GAATGC 1 cut(s) 99
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PspN4I GGNNCC 2 cut(s) 190, 262
PspPI GGNCC 1 cut(s) 189
PsuI RGATCY 1 cut(s) 305
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 223
Sau3AI GATC 2 cut(s) 75, 305
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 1 cut(s) 17
SetI ASST 1 cut(s) 73
SfaNI GCATC 2 cut(s) 227, 236
SgeI CNNG 4 cut(s) 29, 91, 131, 237
SmiMI CAYNNNNRTG 1 cut(s) 223
Sse9I AATT 2 cut(s) 265, 297
TaaI ACNGT 1 cut(s) 130
TasI AATT 2 cut(s) 265, 297
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 1 cut(s) 135
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.