Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002723.1

Orthogroup ID

OG0011616

Physical Location & Seq

Genomic Coordinates Reverse (-)

112818 .. 117404

Gene Structure 4587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002723.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgatgtccgacgagcaacacggggattctaagttctatctccgatcggaatctccaccagaaagtccacaagctcctcgaatcggcgccgttacagctaatttctggtttgagaaacaagatggcattgtgttgatggctactactagaaatctcaagcaaattgatgatgccttaaagcggcctggtcacatggataaagttgctgaaaagactgctcttttaaggcctatagaattaaagccggtacctgcatcgttggaagttagtgcctttaggagcaagtttctcgatacggatgagcttatgagctacagtagttggtttgcgactttcagcagcattattccaaaaggagtgcggaaagccaaaattgcaaagaagctaagaaaaatgctggtgaatcatctggggctaacactgactaaagaagacctgcagagtgtggttgatctaatggagccatatggtcgcagtctcattgcccttctgttgccaaactttgatgttgtagacaatatatggcagtctactgctttaagcatggagaataaccatgagtatgatcagtcccgatcccctggtcagcagctgatcagggatgatttggtcactcaccgtccgattgaaatcagacggttgacagctctcatctcagatctcattacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

223

Amino Acids

25.29

Weight (kDa)

6.98

Isoelectric Point (pI)

66.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396721 RchiOBHm_Chr5g0040161 RchiOBHm_Chr6g0266481
rosa_laevigata	RLG00000013317 RLG00000023273
rosa_multiflora	Rmu_sc0002723.1_g000038 Rmu_sc0005394.1_g000004
rosa_roxburghii	Rroxscaffold_3G00223570
rosa_rugosa	Rorug01G0150100.1 Rorug04G0116200
rosa_samantha	Rh2CG294500 Rh3DG310500 Rh4AG240800 Rh4BG174500 Rh4BG174600 Rh4BG244000 Rh5DG228500 Rh6AG223000 Rh7AG214700 Rh7AG214800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	259, 444
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	2 cut(s)	86, 247
AccI	GTMKAC	2 cut(s)	513, 530
AciI	CCGC	2 cut(s)	181, 361
AclWI	GGATC	1 cut(s)	570
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	83, 180
AgsI	TTSAA	1 cut(s)	629
AjnI	CCWGG	2 cut(s)	184, 580
AloI	GAACNNNNNNTCC	2 cut(s)	17, 49
AluBI	AGCT	7 cut(s)	74, 98, 304, 312, 385, 592, 647
AluI	AGCT	7 cut(s)	74, 98, 304, 312, 385, 592, 647
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	570
AlwNI	CAGNNNCTG	1 cut(s)	592
AoxI	GGCC	2 cut(s)	182, 227
ApeKI	GCWGC	2 cut(s)	339, 589
Asp718I	GGTACC	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	412, 608
BanI	GGYRCC	2 cut(s)	86, 247
BbsI	GAAGAC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	351, 601
BccI	CCATC	2 cut(s)	116, 130
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	2 cut(s)	186, 582
BclI	TGATCA	2 cut(s)	565, 594
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	3 cut(s)	231, 313, 437
BfoI	RGCGCY	1 cut(s)	90
BfuAI	ACCTGC	2 cut(s)	259, 444
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	3 cut(s)	182, 340, 590
BlsI	GCNGC	3 cut(s)	183, 341, 591
Bme1390I	CCNGG	2 cut(s)	186, 582
BmiI	GGNNCC	3 cut(s)	88, 249, 462
BmrFI	CCNGG	2 cut(s)	186, 582
BmsI	GCATC	2 cut(s)	160, 263
BpiI	GAAGAC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	140
BsaBI	GATNNNNATC	2 cut(s)	49, 629
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 180
Bse118I	RCCGGY	1 cut(s)	244
Bse3DI	GCAATG	1 cut(s)	480
Bse8I	GATNNNNATC	2 cut(s)	49, 629
BseBI	CCWGG	2 cut(s)	186, 582
BseDI	CCNNGG	1 cut(s)	580
BseGI	GGATG	2 cut(s)	304, 607
BseJI	GATNNNNATC	2 cut(s)	49, 629
BseLI	CCNNNNNNNGG	2 cut(s)	83, 180
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	669
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	351, 601
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	184, 229
BshNI	GGYRCC	2 cut(s)	86, 247
BsiEI	CGRYCG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	2 cut(s)	83, 180
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	184, 229
Bsp143I	GATC	6 cut(s)	44, 451, 565, 575, 594, 658
BspACI	CCGC	2 cut(s)	181, 361
BspANI	GGCC	2 cut(s)	184, 229
BspCNI	CTCAG	1 cut(s)	668
BspLI	GGNNCC	3 cut(s)	88, 249, 462
BspMAI	CTGCAG	1 cut(s)	441
BspMI	ACCTGC	2 cut(s)	259, 444
BspPI	GGATC	1 cut(s)	570
BspT107I	GGYRCC	2 cut(s)	86, 247
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	244
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	580
BssMI	GATC	6 cut(s)	44, 451, 565, 575, 594, 658
BssNI	GRCGYC	1 cut(s)	87
Bst2UI	CCWGG	2 cut(s)	186, 582
Bst4CI	ACNGT	3 cut(s)	317, 620, 639
BstACI	GRCGYC	1 cut(s)	87
BstDEI	CTNAG	4 cut(s)	30, 386, 655, 669
BstF5I	GGATG	2 cut(s)	304, 607
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	6 cut(s)	47, 454, 568, 578, 597, 661
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	6 cut(s)	44, 451, 565, 575, 594, 658
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 374
BstNI	CCWGG	2 cut(s)	186, 582
BstSCI	CCNGG	2 cut(s)	184, 580
BstSFI	CTRYAG	3 cut(s)	231, 313, 437
BstV1I	GCAGC	2 cut(s)	351, 601
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BsuRI	GGCC	2 cut(s)	184, 229
BtsCI	GGATG	2 cut(s)	304, 607
BtsIMutI	CAGTG	1 cut(s)	419
BveI	ACCTGC	2 cut(s)	259, 444
CaiI	CAGNNNCTG	1 cut(s)	592
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	3 cut(s)	193, 544, 557
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	4 cut(s)	30, 386, 655, 669
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	6 cut(s)	46, 453, 567, 577, 596, 660
DpnII	GATC	6 cut(s)	44, 451, 565, 575, 594, 658
Eco147I	AGGCCT	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	184, 580
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
FaeI	CATG	3 cut(s)	196, 547, 560
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	3 cut(s)	192, 543, 556
FauNDI	CATATG	1 cut(s)	466
FbaI	TGATCA	2 cut(s)	565, 594
FblI	GTMKAC	2 cut(s)	513, 530
Fnu4HI	GCNGC	3 cut(s)	182, 340, 590
FokI	GGATG	2 cut(s)	311, 614
Fsp4HI	GCNGC	3 cut(s)	182, 340, 590
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	3 cut(s)	182, 340, 590
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	184, 229
HapII	CCGG	1 cut(s)	245
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	3 cut(s)	196, 547, 560
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	4 cut(s)	26, 50, 81, 403
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	2 cut(s)	412, 608
Hpy166II	GTNNAC	4 cut(s)	68, 514, 531, 642
Hpy188I	TCNGA	6 cut(s)	10, 44, 49, 624, 635, 658
Hpy188III	TCNNGA	2 cut(s)	290, 573
Hpy8I	GTNNAC	4 cut(s)	68, 514, 531, 642
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	3 cut(s)	317, 620, 639
HpyCH4V	TGCA	3 cut(s)	254, 377, 439
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 374
HpyF3I	CTNAG	4 cut(s)	30, 386, 655, 669
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	196, 547, 560
HspAI	GCGC	1 cut(s)	87
KasI	GGCGCC	1 cut(s)	86
KpnI	GGTACC	1 cut(s)	251
Ksp22I	TGATCA	2 cut(s)	565, 594
Kzo9I	GATC	6 cut(s)	44, 451, 565, 575, 594, 658
LmnI	GCTCC	3 cut(s)	79, 279, 460
Lsp1109I	GCAGC	2 cut(s)	351, 601
LweI	GCATC	2 cut(s)	160, 263
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	3 cut(s)	91, 188, 610
MalI	GATC	6 cut(s)	46, 453, 567, 577, 596, 660
MboI	GATC	6 cut(s)	44, 451, 565, 575, 594, 658
MboII	GAAGA	1 cut(s)	443
MflI	RGATCY	1 cut(s)	658
MluCI	AATT	4 cut(s)	100, 162, 236, 372
Mly113I	GGCGCC	1 cut(s)	87
MmeI	TCCRAC	2 cut(s)	33, 240
MnlI	CCTC	1 cut(s)	87
MseI	TTAA	4 cut(s)	176, 224, 239, 539
MslI	CAYNNNNRTG	1 cut(s)	561
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	186, 582
MvaI	CCWGG	2 cut(s)	186, 582
MwoI	GCNNNNNNNGC	2 cut(s)	95, 374
NarI	GGCGCC	1 cut(s)	87
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	6 cut(s)	44, 451, 565, 575, 594, 658
NlaIII	CATG	3 cut(s)	196, 547, 560
NlaIV	GGNNCC	3 cut(s)	88, 249, 462
NmuCI	GTSAC	2 cut(s)	188, 610
PceI	AGGCCT	1 cut(s)	229
PfeI	GAWTC	4 cut(s)	26, 50, 81, 403
PkrI	GCNGC	3 cut(s)	183, 341, 591
Ple19I	CGATCG	1 cut(s)	47
PluTI	GGCGCC	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	184, 580
PspGI	CCWGG	2 cut(s)	184, 580
PspN4I	GGNNCC	3 cut(s)	88, 249, 462
PstI	CTGCAG	1 cut(s)	441
PstNI	CAGNNNCTG	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	658
PvuI	CGATCG	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	592
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	561
SaqAI	TTAA	4 cut(s)	176, 224, 239, 539
SatI	GCNGC	3 cut(s)	182, 340, 590
Sau3AI	GATC	6 cut(s)	44, 451, 565, 575, 594, 658
ScrFI	CCNGG	2 cut(s)	186, 582
SetI	ASST	9 cut(s)	76, 100, 253, 306, 314, 387, 438, 594, 649
SfaNI	GCATC	2 cut(s)	160, 263
SfcI	CTRYAG	3 cut(s)	231, 313, 437
SfoI	GGCGCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	4 cut(s)	100, 162, 236, 372
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	2 cut(s)	181, 361
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	147
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	2 cut(s)	184, 580
TaaI	ACNGT	3 cut(s)	317, 620, 639
TaqI	TCGA	2 cut(s)	79, 291
TasI	AATT	4 cut(s)	100, 162, 236, 372
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	4 cut(s)	26, 50, 81, 403
Tru1I	TTAA	4 cut(s)	176, 224, 239, 539
Tru9I	TTAA	4 cut(s)	176, 224, 239, 539
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	2 cut(s)	188, 610
TseI	GCWGC	2 cut(s)	339, 589
Tsp45I	GTSAC	2 cut(s)	188, 610
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	1 cut(s)	426
XmiI	GTMKAC	2 cut(s)	513, 530
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.