Rh2CG294500

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011616
Physical Location & Seq
Forward (+)
33715113 .. 33725605
10493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG294500.1

Sequence Viewer

Length: 777 bp
ATGATAACAGCATCCTCACCGGAACCTAAACCTAAGAATCTGCTGCTTGATAAGAAACAACAAAGCCTCAAGATCGGCGATGGGATCAGTCAGTCTTTCGCTTTCTTCTACGAGTCTTTTGTGCCGGAGGTTTTGCTTGGATTCACAGATTACTCGACTCCGAAGGACATTTGGGCCGTCGGCTGCATCTTCGTATACTCAGTGGTGGGATTACATGGTGACTCTAAAGTGAGAGCAGTATATTTGGGAGGGTGGTTGTTAGTGGAAGGTTGGATCAAGCCTTCACTTTTTGATGGCATTCCCAATGGAGATATGCTTGATGGAACAGTGGTACAACTAAAGTTGGTAACTTTGGATGAGTATGTCTTTGCAGAAAATGGGGGAGGGGCCAATGTCTCTGTTAGTAGAGATGTTGCATCTTCATGGGAAACGCTGAGGGTAAGATGCTCAATCATCAATGGTTCCAATTTTGTATTGGTTGTTAGCCGATTATTTGGAATTGAAGGATCTGCAAACTCAAAAGTAGTCATCTTTTTTTTTATCAATTCCCCTTTTCAGAAATATGAACAGATATTCAGGTGTAGCATCTCTCTTATTCTGTTATTCATACTGTACTGGATTATTGACGATTGGAGAAGGTTAGAGGAGCCTTATGGAAGGATTGGAAGCTATGGGTATTGGATTGGAAGCATAAATATCGGAATCGAAGCGATGTATTGGTATTGGACTTGGTCTTGGTCTAAGAAGATAATAGTGTTGATGAAAGTATGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cellulase Fascin

Protein Analysis

258

Amino Acids

29.33

Weight (kDa)

5.93

Isoelectric Point (pI)

30.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7910 PF25490 102 - 161 1.3e-14 Domain of unknown function (DUF7910)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 195
AclWI GGATC 3 cut(s) 92, 281, 514
AfaI GTAC 2 cut(s) 333, 614
AgsI TTSAA 1 cut(s) 503
AluBI AGCT 1 cut(s) 669
AluI AGCT 1 cut(s) 669
Alw26I GTCTC 1 cut(s) 400
AlwI GGATC 3 cut(s) 92, 281, 514
AoxI GGCC 2 cut(s) 174, 387
ApeKI GCWGC 2 cut(s) 43, 183
AspS9I GGNCC 2 cut(s) 174, 387
AsuHPI GGTGA 2 cut(s) 9, 230
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 30, 170
BccI CCATC 3 cut(s) 74, 287, 314
BceAI ACGGC 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 679, 713
BcoDI GTCTC 1 cut(s) 400
BisI GCNGC 2 cut(s) 44, 184
BlsI GCNGC 2 cut(s) 45, 185
BmgT120I GGNCC 2 cut(s) 174, 387
BmiI GGNNCC 4 cut(s) 24, 388, 463, 648
BmsI GCATC 5 cut(s) 20, 195, 425, 434, 594
Bpu10I CCTNAGC 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 620
BseGI GGATG 2 cut(s) 11, 361
BseMII CTCAG 2 cut(s) 213, 425
BseNI ACTGG 1 cut(s) 620
BseRI GAGGAG 1 cut(s) 659
BseXI GCAGC 2 cut(s) 30, 170
BshFI GGCC 2 cut(s) 176, 389
BsiSI CCGG 2 cut(s) 20, 125
BsmAI GTCTC 1 cut(s) 400
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 2 cut(s) 176, 389
Bsp143I GATC 4 cut(s) 72, 84, 273, 506
BspANI GGCC 2 cut(s) 176, 389
BspCNI CTCAG 2 cut(s) 212, 426
BspLI GGNNCC 4 cut(s) 24, 388, 463, 648
BspPI GGATC 3 cut(s) 92, 281, 514
BsrI ACTGG 1 cut(s) 620
BssMI GATC 4 cut(s) 72, 84, 273, 506
BssNAI GTATAC 1 cut(s) 196
Bst1107I GTATAC 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 328, 612
BstDEI CTNAG 4 cut(s) 33, 199, 434, 741
BstF5I GGATG 2 cut(s) 11, 361
BstKTI GATC 4 cut(s) 75, 87, 276, 509
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 4 cut(s) 72, 84, 273, 506
BstV1I GCAGC 2 cut(s) 30, 170
BstX2I RGATCY 1 cut(s) 506
BstYI RGATCY 1 cut(s) 506
BstZ17I GTATAC 1 cut(s) 196
BsuRI GGCC 2 cut(s) 176, 389
BtgZI GCGATG 2 cut(s) 93, 725
BtsCI GGATG 2 cut(s) 11, 361
BtsIMutI CAGTG 2 cut(s) 207, 333
Cfr13I GGNCC 2 cut(s) 174, 387
Csp6I GTAC 2 cut(s) 332, 613
CviAII CATG 2 cut(s) 215, 423
CviJI RGCY 8 cut(s) 66, 176, 183, 280, 389, 486, 649, 669
CviKI_1 RGCY 8 cut(s) 66, 176, 183, 280, 389, 486, 649, 669
CviQI GTAC 2 cut(s) 332, 613
DdeI CTNAG 4 cut(s) 33, 199, 434, 741
DpnI GATC 4 cut(s) 74, 86, 275, 508
DpnII GATC 4 cut(s) 72, 84, 273, 506
FaeI CATG 2 cut(s) 218, 426
FatI CATG 2 cut(s) 214, 422
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 44, 184
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 2 cut(s) 44, 184
GluI GCNGC 2 cut(s) 44, 184
HaeIII GGCC 2 cut(s) 176, 389
HapII CCGG 2 cut(s) 20, 125
Hin1II CATG 2 cut(s) 218, 426
HinfI GANTC 6 cut(s) 37, 113, 141, 157, 221, 702
HpaII CCGG 2 cut(s) 20, 125
HphI GGTGA 2 cut(s) 9, 230
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 3 cut(s) 162, 558, 701
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 6 cut(s) 157, 260, 291, 497, 630, 651
HpyCH4III ACNGT 2 cut(s) 328, 612
HpyCH4V TGCA 4 cut(s) 186, 371, 416, 512
HpyF3I CTNAG 4 cut(s) 33, 199, 434, 741
Hsp92II CATG 2 cut(s) 218, 426
Kzo9I GATC 4 cut(s) 72, 84, 273, 506
LmnI GCTCC 1 cut(s) 646
LpnPI CCDG 4 cut(s) 33, 138, 562, 601
Lsp1109I GCAGC 2 cut(s) 30, 170
LweI GCATC 5 cut(s) 20, 195, 425, 434, 594
MaeIII GTNAC 2 cut(s) 218, 346
MalI GATC 4 cut(s) 74, 86, 275, 508
MboI GATC 4 cut(s) 72, 84, 273, 506
MboII GAAGA 4 cut(s) 97, 181, 411, 757
MflI RGATCY 1 cut(s) 506
MluCI AATT 3 cut(s) 466, 498, 544
MlyI GAGTC 3 cut(s) 122, 151, 215
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 7 cut(s) 25, 77, 121, 242, 377, 429, 637
MseI TTAA 1 cut(s) 775
MslI CAYNNNNRTG 1 cut(s) 421
MspI CCGG 2 cut(s) 20, 125
Mva1269I GAATGC 1 cut(s) 297
NdeII GATC 4 cut(s) 72, 84, 273, 506
NlaIII CATG 2 cut(s) 218, 426
NlaIV GGNNCC 4 cut(s) 24, 388, 463, 648
NmuCI GTSAC 1 cut(s) 218
PctI GAATGC 1 cut(s) 297
PfeI GAWTC 3 cut(s) 37, 141, 702
PflFI GACNNNGTC 1 cut(s) 730
PkrI GCNGC 2 cut(s) 45, 185
PleI GAGTC 3 cut(s) 121, 151, 215
PpsI GAGTC 3 cut(s) 121, 151, 215
PspN4I GGNNCC 4 cut(s) 24, 388, 463, 648
PspPI GGNCC 2 cut(s) 174, 387
PsuI RGATCY 1 cut(s) 506
PsyI GACNNNGTC 1 cut(s) 730
RsaI GTAC 2 cut(s) 333, 614
RsaNI GTAC 2 cut(s) 332, 613
RseI CAYNNNNRTG 1 cut(s) 421
SaqAI TTAA 1 cut(s) 775
SatI GCNGC 2 cut(s) 44, 184
Sau3AI GATC 4 cut(s) 72, 84, 273, 506
Sau96I GGNCC 2 cut(s) 174, 387
SchI GAGTC 3 cut(s) 122, 151, 215
SetI ASST 7 cut(s) 28, 34, 132, 271, 581, 641, 671
SfaNI GCATC 5 cut(s) 20, 195, 425, 434, 594
SmiMI CAYNNNNRTG 1 cut(s) 421
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 3 cut(s) 466, 498, 544
TaaI ACNGT 2 cut(s) 328, 612
TaqI TCGA 2 cut(s) 155, 705
TasI AATT 3 cut(s) 466, 498, 544
TatI WGTACW 1 cut(s) 612
TfiI GAWTC 3 cut(s) 37, 141, 702
Tru1I TTAA 1 cut(s) 775
Tru9I TTAA 1 cut(s) 775
TscAI CASTG 2 cut(s) 207, 333
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 2 cut(s) 43, 183
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 4 cut(s) 411, 579, 595, 776
TspRI CASTG 2 cut(s) 207, 333
Tth111I GACNNNGTC 1 cut(s) 730
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.