Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005394.1

Orthogroup ID

OG0011616

Physical Location & Seq

Genomic Coordinates Reverse (-)

23876 .. 25426

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005394.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgactgtcatgttaacagcatcctcaccagaacctaaacctaagaatatgctgcttgataagaaacaacagagcctcacgatcggcgatgggatcagtcagtctttcgctttcttctacgagtcttttgtgctggaggttttgttaacagcatcctcaccagaacctaaacctaagaatatgctgcttgataagaaacaacagagcctcacgatcggcgatgggttcagtcagtctttcgctttcttctacgagtcttttgtgctggaggttttgcttggattcacagattactcgactccgaaggacatttgggccgtcggctgcatcttcgctgagatggcatggtttgagaaacaagatgaggttatattgatggctactactggaaatctcaagcaaattgatgatgccttaaagtggcctggttgcatggatagagtatttcatcttcaaaggccaactcaagcagaaagggagaagatactacacatagctgcaaaagaaacaatggataacgagctcattgattttgtagactggagaaaggtaaaatgtgaggatggttgctgtagctgtcaattttctcattgcattgtggttgttatatatgtcctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

206

Amino Acids

23.43

Weight (kDa)

4.92

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396721 RchiOBHm_Chr5g0040161 RchiOBHm_Chr6g0266481
rosa_laevigata	RLG00000013317 RLG00000023273
rosa_multiflora	Rmu_sc0002723.1_g000038 Rmu_sc0005394.1_g000004
rosa_roxburghii	Rroxscaffold_3G00223570
rosa_rugosa	Rorug01G0150100.1 Rorug04G0116200
rosa_samantha	Rh2CG294500 Rh3DG310500 Rh4AG240800 Rh4BG174500 Rh4BG174600 Rh4BG244000 Rh5DG228500 Rh6AG223000 Rh7AG214700 Rh7AG214800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	537
AclWI	GGATC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	455
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	3 cut(s)	497, 523, 576
AluI	AGCT	3 cut(s)	497, 523, 576
Alw21I	GWGCWC	1 cut(s)	525
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	3 cut(s)	315, 422, 458
ApeKI	GCWGC	4 cut(s)	52, 184, 324, 497
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	18, 150
BanII	GRGCYC	1 cut(s)	525
BarI	GAAGNNNNNNTAC	2 cut(s)	435, 467
Bbv12I	GWGCWC	1 cut(s)	525
BbvI	GCAGC	4 cut(s)	39, 171, 311, 484
BccI	CCATC	5 cut(s)	83, 215, 334, 370, 557
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	571
BisI	GCNGC	4 cut(s)	53, 185, 325, 498
BlsI	GCNGC	4 cut(s)	54, 186, 326, 499
Bme1390I	CCNGG	1 cut(s)	426
BmgT120I	GGNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	4 cut(s)	29, 161, 336, 400
BpmI	CTGGAG	3 cut(s)	155, 287, 562
BpuEI	CTTGAG	2 cut(s)	380, 450
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse1I	ACTGG	2 cut(s)	391, 545
Bse3DI	GCAATG	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	426
BseGI	GGATG	3 cut(s)	20, 152, 568
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	2 cut(s)	391, 545
BseXI	GCAGC	4 cut(s)	39, 171, 311, 484
Bsh1285I	CGRYCG	2 cut(s)	84, 216
BshFI	GGCC	3 cut(s)	317, 424, 460
BsiEI	CGRYCG	2 cut(s)	84, 216
BsiHKAI	GWGCWC	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	420
BsnI	GGCC	3 cut(s)	317, 424, 460
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	3 cut(s)	81, 93, 213
BspANI	GGCC	3 cut(s)	317, 424, 460
BspCNI	CTCAG	1 cut(s)	328
BspPI	GGATC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	391, 545
BssMI	GATC	3 cut(s)	81, 93, 213
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	42, 174, 336
BstF5I	GGATG	3 cut(s)	20, 152, 568
BstKTI	GATC	3 cut(s)	84, 96, 216
BstMBI	GATC	3 cut(s)	81, 93, 213
BstMCI	CGRYCG	2 cut(s)	84, 216
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	571
BstV1I	GCAGC	4 cut(s)	39, 171, 311, 484
BsuRI	GGCC	3 cut(s)	317, 424, 460
BtgZI	GCGATG	2 cut(s)	102, 234
BtsCI	GGATG	3 cut(s)	20, 152, 568
Cfr13I	GGNCC	1 cut(s)	315
CviAII	CATG	3 cut(s)	10, 345, 433
DdeI	CTNAG	3 cut(s)	42, 174, 336
DpnI	GATC	3 cut(s)	83, 95, 215
DpnII	GATC	3 cut(s)	81, 93, 213
Ecl136II	GAGCTC	1 cut(s)	523
Eco24I	GRGCYC	1 cut(s)	525
Eco53kI	GAGCTC	1 cut(s)	523
EcoICRI	GAGCTC	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	525
FaeI	CATG	3 cut(s)	13, 348, 436
FatI	CATG	3 cut(s)	9, 344, 432
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	4 cut(s)	53, 185, 325, 498
FokI	GGATG	3 cut(s)	7, 139, 575
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	4 cut(s)	53, 185, 325, 498
GluI	GCNGC	4 cut(s)	53, 185, 325, 498
GsuI	CTGGAG	3 cut(s)	155, 287, 562
HaeIII	GGCC	3 cut(s)	317, 424, 460
Hin1II	CATG	3 cut(s)	13, 348, 436
HincII	GTYRAC	2 cut(s)	15, 147
HindII	GTYRAC	2 cut(s)	15, 147
HinfI	GANTC	4 cut(s)	122, 254, 282, 298
HpaI	GTTAAC	2 cut(s)	15, 147
HphI	GGTGA	2 cut(s)	18, 150
Hpy166II	GTNNAC	3 cut(s)	15, 147, 538
Hpy188I	TCNGA	1 cut(s)	303
Hpy188III	TCNNGA	2 cut(s)	79, 211
Hpy8I	GTNNAC	3 cut(s)	15, 147, 538
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	4 cut(s)	327, 432, 500, 594
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	3 cut(s)	42, 174, 336
Hsp92II	CATG	3 cut(s)	13, 348, 436
KspAI	GTTAAC	2 cut(s)	15, 147
Kzo9I	GATC	3 cut(s)	81, 93, 213
LpnPI	CCDG	8 cut(s)	42, 119, 174, 251, 372, 411, 438, 526
Lsp1109I	GCAGC	4 cut(s)	39, 171, 311, 484
LweI	GCATC	4 cut(s)	29, 161, 336, 400
MalI	GATC	3 cut(s)	83, 95, 215
MboI	GATC	3 cut(s)	81, 93, 213
MboII	GAAGA	5 cut(s)	106, 238, 322, 443, 493
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	2 cut(s)	402, 581
MlyI	GAGTC	3 cut(s)	131, 263, 292
MnlI	CCTC	8 cut(s)	34, 86, 130, 166, 218, 262, 358, 553
MseI	TTAA	3 cut(s)	14, 146, 416
MspR9I	CCNGG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeII	GATC	3 cut(s)	81, 93, 213
NlaIII	CATG	3 cut(s)	13, 348, 436
PfeI	GAWTC	1 cut(s)	282
PkrI	GCNGC	4 cut(s)	54, 186, 326, 499
Ple19I	CGATCG	2 cut(s)	84, 216
PleI	GAGTC	3 cut(s)	130, 262, 292
PpsI	GAGTC	3 cut(s)	130, 262, 292
Psp124BI	GAGCTC	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	315
PvuI	CGATCG	2 cut(s)	84, 216
SacI	GAGCTC	1 cut(s)	525
SaqAI	TTAA	3 cut(s)	14, 146, 416
SatI	GCNGC	4 cut(s)	53, 185, 325, 498
Sau3AI	GATC	3 cut(s)	81, 93, 213
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	3 cut(s)	131, 263, 292
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	4 cut(s)	29, 161, 336, 400
SfcI	CTRYAG	1 cut(s)	571
SmlI	CTYRAG	2 cut(s)	395, 465
SmoI	CTYRAG	2 cut(s)	395, 465
Sse9I	AATT	2 cut(s)	402, 581
SstI	GAGCTC	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	7
TaqI	TCGA	1 cut(s)	296
TasI	AATT	2 cut(s)	402, 581
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	3 cut(s)	14, 146, 416
Tru9I	TTAA	3 cut(s)	14, 146, 416
TseI	GCWGC	4 cut(s)	52, 184, 324, 497
TspDTI	ATGAA	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.