Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011616

Physical Location & Seq

Genomic Coordinates Reverse (-)

19868263 .. 19868868

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG214700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCTACTACTGGAAATCTCAAGCAAATTGATGATGCCTTAAAGTGGCCTGGTTGCATGGATAGAGTATTTCAGCTTCAAAGGCCAACTCAAGCAGAAAGGGAGAAGATACTACACATAGCTGCAAAAGAAACAATGGATAATGAGCTCATTGATTTTGTAGACTGGAGAAAGGTTGCTGAAAAGAATGCTCTTTTAAGGCCTATAGAATTAAAGCCGGTACCTGCATCGTTGGAAGGTAGTGCCTTTAGGAGCAAGTTTCTCGATACAGATGAGCTTATGAGTTACAGTAGTTGGTTTGCGGTAAGGCACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

105

Amino Acids

12.12

Weight (kDa)

6.1

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396721 RchiOBHm_Chr5g0040161 RchiOBHm_Chr6g0266481
rosa_laevigata	RLG00000013317 RLG00000023273
rosa_multiflora	Rmu_sc0002723.1_g000038 Rmu_sc0005394.1_g000004
rosa_roxburghii	Rroxscaffold_3G00223570
rosa_rugosa	Rorug01G0150100.1 Rorug04G0116200
rosa_samantha	Rh2CG294500 Rh3DG310500 Rh4AG240800 Rh4BG174500 Rh4BG174600 Rh4BG244000 Rh5DG228500 Rh6AG223000 Rh7AG214700 Rh7AG214800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	232
Acc65I	GGTACC	1 cut(s)	220
AccB1I	GGYRCC	1 cut(s)	220
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	302
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	4 cut(s)	76, 122, 148, 277
AluI	AGCT	4 cut(s)	76, 122, 148, 277
Alw21I	GWGCWC	1 cut(s)	150
AoxI	GGCC	3 cut(s)	47, 83, 200
ApeKI	GCWGC	1 cut(s)	122
Asp718I	GGTACC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	150
BarI	GAAGNNNNNNTAC	2 cut(s)	60, 92
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	109
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BciT130I	CCWGG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	2 cut(s)	25, 236
BpmI	CTGGAG	1 cut(s)	187
BpuEI	CTTGAG	2 cut(s)	5, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	2 cut(s)	16, 170
BseBI	CCWGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	16, 170
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	3 cut(s)	49, 85, 202
BshNI	GGYRCC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	49, 85, 202
Bsp1286I	GDGCHC	1 cut(s)	150
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	3 cut(s)	49, 85, 202
BspLI	GGNNCC	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	16, 170
BssAI	RCCGGY	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	290
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	109
BsuRI	GGCC	3 cut(s)	49, 85, 202
BveI	ACCTGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	9 cut(s)	5, 49, 76, 85, 122, 148, 202, 217, 277
CviKI_1	RGCY	9 cut(s)	5, 49, 76, 85, 122, 148, 202, 217, 277
CviQI	GTAC	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	148
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	1 cut(s)	61
FaiI	YATR	4 cut(s)	59, 119, 206, 281
FatI	CATG	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	123
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	3 cut(s)	49, 85, 202
HapII	CCGG	1 cut(s)	218
Hin1II	CATG	1 cut(s)	61
HpaII	CCGG	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	3 cut(s)	57, 125, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	61
KpnI	GGTACC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	5 cut(s)	36, 63, 151, 231, 237
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	25, 236
MaeIII	GTNAC	1 cut(s)	284
MboII	GAAGA	1 cut(s)	118
MfeI	CAATTG	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	3 cut(s)	27, 209, 313
MmeI	TCCRAC	1 cut(s)	213
MseI	TTAA	3 cut(s)	41, 197, 212
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	51
MunI	CAATTG	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	82
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	222
PceI	AGGCCT	1 cut(s)	202
PctI	GAATGC	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	222
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	3 cut(s)	41, 197, 212
SatI	GCNGC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	7 cut(s)	78, 124, 150, 177, 226, 241, 279
SfaNI	GCATC	2 cut(s)	25, 236
SfcI	CTRYAG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	20, 90
SmoI	CTYRAG	2 cut(s)	20, 90
Sse9I	AATT	3 cut(s)	27, 209, 313
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	302
SstI	GAGCTC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	290
TaqI	TCGA	1 cut(s)	264
TasI	AATT	3 cut(s)	27, 209, 313
Tru1I	TTAA	3 cut(s)	41, 197, 212
Tru9I	TTAA	3 cut(s)	41, 197, 212
TseI	GCWGC	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.