RchiOBHm_Chr5g0040361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006230
Physical Location & Seq
Reverse (-)
35023065 .. 35024016
952 bp
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UTR
Exon/CDS
Intron
PRQ31886

Sequence Viewer

Length: 360 bp
ATGGCGGTCGATGTTGATGAACTAACCTTGCTTTTAAGATGTTGTGTATCTTTGAGCATGGTGGACTCAAGTTTAGTAATGGAGAATACCCAATTTCTTCTTTCGGTTCTTGGGAAATTGATTGCTTTGGTTACAAGTGGATGCAGTGAGAAAGAGTCTGTCAGCTTTTGGAAGTCTATTTCTTGTGAATGCACGTATACGGATGCTGGTGGAACCTATGTTTCTGAAGACTTTGTTGCTTCCTTATGTTTCTTACAGCCTTCTAATCTGTGGCACCCGGTTCTTTGTGCATTGCTTGAGGTAACATTCATAAAATTTCAACTCTTAATTTGTGCTTTCAAGTTTATGTTTTCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.19

Weight (kDa)

4.45

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7812 PF25104 10 - 102 4.1e-20 Domain of unknown function (DUF7812)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 273
AccI GTMKAC 1 cut(s) 197
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 314
AcuI CTGAAG 1 cut(s) 246
AgsI TTSAA 2 cut(s) 320, 340
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
ApoI RAATTY 1 cut(s) 314
AsuC2I CCSGG 1 cut(s) 278
BanI GGYRCC 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 234
BcnI CCSGG 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 278
BmiI GGNNCC 2 cut(s) 214, 275
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 2 cut(s) 131, 193
BpiI GAAGAC 1 cut(s) 234
BpuEI CTTGAG 2 cut(s) 52, 317
BpuMI CCSGG 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 290
BseGI GGATG 2 cut(s) 146, 208
BseMI GCAATG 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 273
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 278
BsmI GAATGC 1 cut(s) 194
BspACI CCGC 1 cut(s) 5
BspLI GGNNCC 2 cut(s) 214, 275
BspT107I GGYRCC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 290
BssNAI GTATAC 1 cut(s) 198
Bst1107I GTATAC 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 195
BstF5I GGATG 2 cut(s) 146, 208
BstMCI CGRYCG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 276
BstV2I GAAGAC 1 cut(s) 234
BstZ17I GTATAC 1 cut(s) 198
BtsCI GGATG 2 cut(s) 146, 208
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
CviAII CATG 1 cut(s) 58
CviJI RGCY 2 cut(s) 165, 259
CviKI_1 RGCY 2 cut(s) 165, 259
Eco57I CTGAAG 1 cut(s) 246
FaeI CATG 1 cut(s) 61
FaiI YATR 6 cut(s) 59, 198, 219, 247, 311, 347
FatI CATG 1 cut(s) 57
FblI GTMKAC 1 cut(s) 197
FokI GGATG 2 cut(s) 153, 215
HapII CCGG 1 cut(s) 278
Hin1II CATG 1 cut(s) 61
HinfI GANTC 2 cut(s) 65, 155
HpaII CCGG 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 64, 198
Hpy188I TCNGA 2 cut(s) 226, 359
Hpy8I GTNNAC 2 cut(s) 64, 198
HpyAV CCTTC 1 cut(s) 270
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 144, 192, 290
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 1 cut(s) 61
LpnPI CCDG 2 cut(s) 192, 291
LweI GCATC 2 cut(s) 131, 193
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 2 cut(s) 130, 301
MboII GAAGA 2 cut(s) 89, 239
MluCI AATT 4 cut(s) 92, 116, 314, 327
MlyI GAGTC 2 cut(s) 59, 164
MnlI CCTC 1 cut(s) 292
MseI TTAA 2 cut(s) 35, 326
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 194
NciI CCSGG 1 cut(s) 278
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 2 cut(s) 214, 275
PctI GAATGC 1 cut(s) 194
PleI GAGTC 2 cut(s) 59, 163
PpsI GAGTC 2 cut(s) 59, 163
Ppu21I YACGTR 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 214, 275
SaqAI TTAA 2 cut(s) 35, 326
SchI GAGTC 2 cut(s) 59, 164
ScrFI CCNGG 1 cut(s) 278
SetI ASST 5 cut(s) 29, 167, 197, 218, 303
SfaNI GCATC 2 cut(s) 131, 193
SmlI CTYRAG 2 cut(s) 67, 296
SmoI CTYRAG 2 cut(s) 67, 296
Sse9I AATT 4 cut(s) 92, 116, 314, 327
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 276
TaiI ACGT 1 cut(s) 197
TaqI TCGA 1 cut(s) 9
TasI AATT 4 cut(s) 92, 116, 314, 327
Tru1I TTAA 2 cut(s) 35, 326
Tru9I TTAA 2 cut(s) 35, 326
TscAI CASTG 1 cut(s) 151
TspDTI ATGAA 2 cut(s) 33, 298
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 1 cut(s) 151
XapI RAATTY 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.