RLG00000001560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006230
Physical Location & Seq
Forward (+)
17514162 .. 17518849
4688 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001560

Sequence Viewer

Length: 1464 bp
ATGGGTTCGAAGCGCAAGAGATCCAAGAAGATGCTCCCGAACCCCGCAGTCCCAACTCCGAATCGCCTTCCCCCAATCACCTTCCAAACCCTAATTTCTGCAATTGAAGCACCACAGATGTTACAGACTCATTTCATTTTATTAGTTTCTGAAGCAATAGATATAGACACCTCTTTGAAGAATGTTAGACCAGATATTAGAAATATGGACTGCTATCTAACAGCATTCGAAAGGTCAGTTGTTTTGTACACTAGCCACATGTCTAGTTCACTTATGGATCACCATCCGTTGGGTGTTAGCTGTTCTCATGCCAATTCATGGATGCTAGGGAGTCATCATCCTTCTTTTGAATCTTGTATTCAGCAAGGAACAATAGAAAAAATTTGTAATCGAGTGACCCATTTAGGTTCCTTGAGGCAGTTAACAAAGTCTGGTATGATGACTGCTTCTACTGCATACATAAATGAGAACCAACATATTTTCAATGAATCATGTAAAGATGATATTCTGTCAATCTTACATAGCATAATACATGGAGCTTCATCTTCAGATGCCAATCATAACGTATTTTATAGAAAAGGGGATACAAACCCAGAAGACATTTATCATCTTGCTTCGATATTGAAGTTAATGAGTAGTTCCTTGTTGAAAGTTATTTGGTGCCTGAGAAATGGTGGGAATTCGGGGTATCCGCAAACCTTAAAAGATGCTTCTTCACTTAAGGAATATGATTTTGTGGTGGGAATCATTGGCTGCTTTATTCAATTCAATTTGTCTCTACCTAATCAGAAGTTCTTATCTGACATGATGAAAACCCGCCCGATGATACATAAGACTTCCAAGTGGATCCTTCTGCATTTTTTGGGCTTGCTGTCATTAAGTTTTGCTAGTGGGATTGATTTCTTAGTTAAGGGCTGCATATCAATAATCATGGCAATATTAAACCTATGTGCTTTTGAAGAGGGTGATATAGTTGCACTGAGGTCATTCTTAGATGCTGGTTCACAATCTGTTTCATCTGAATTGCCTGCTGATAAGGTTACACAGGCTGTGAAGAAACAGAATTCCATCAGAAAAGTTGCATCAAAGTTTAAGAAGACTCAAAATGTTTACTTGAGCAAACATTCTGTCACACGCCACCATAAGAAAGCACAGAGTGACGTAGCAAAAACTATCCAAAATGCATGCTTCATGAGCTGCACAAGAGAGTTTAGTGATATCATGGAGGAGGAAACAGAAGAAACATGCACTGGGGAGATGTACCTCAATTGCACACTAGCAGGCTCCAAGAAGTCTGACCTTGATGATTTGGCAGACTTCATTGTGTGCAAACGAGGGAAGGAGTACTCTAGCTGGTTGAAAGATCGAGAAAGGTATCGATCTTGGAAAGTAAAAAAAGAGGCAGTTGTAAGGTGGGAGAAAAAGAAAAGGACTTACCGGAAAGTTAGAAGTAAAAGGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

488

Amino Acids

55.06

Weight (kDa)

9.29

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7812 PF25104 35 - 327 2.3e-125 Domain of unknown function (DUF7812)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 660
AccB7I CCANNNNNTGG 2 cut(s) 289, 318
AciI CCGC 3 cut(s) 45, 692, 817
AclWI GGATC 4 cut(s) 15, 285, 841, 854
AcsI RAATTY 3 cut(s) 381, 679, 1063
AcuI CTGAAG 2 cut(s) 171, 531
AdeI CACNNNGTG 1 cut(s) 1157
AfaI GTAC 3 cut(s) 248, 1262, 1346
AfiI CCNNNNNNNGG 2 cut(s) 289, 318
AflII CTTAAG 1 cut(s) 719
AflIII ACRYGT 1 cut(s) 258
AluBI AGCT 4 cut(s) 300, 539, 1197, 1353
AluI AGCT 4 cut(s) 300, 539, 1197, 1353
Alw26I GTCTC 1 cut(s) 780
AlwI GGATC 4 cut(s) 15, 285, 841, 854
ApeKI GCWGC 3 cut(s) 753, 915, 1197
ApoI RAATTY 3 cut(s) 381, 679, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 1113, 1145
AspLEI GCGC 1 cut(s) 15
AsuHPI GGTGA 3 cut(s) 70, 272, 977
AsuII TTCGAA 2 cut(s) 8, 228
BamHI GGATCC 1 cut(s) 846
BanI GGYRCC 1 cut(s) 660
BbsI GAAGAC 2 cut(s) 603, 1103
BbvI GCAGC 3 cut(s) 740, 902, 1184
BccI CCATC 2 cut(s) 291, 1076
BciVI GTATCC 2 cut(s) 577, 699
BcoDI GTCTC 1 cut(s) 780
BfaI CTAG 6 cut(s) 252, 264, 326, 888, 1277, 1350
BfrI CTTAAG 1 cut(s) 719
BfuI GTATCC 2 cut(s) 577, 699
BisI GCNGC 3 cut(s) 754, 916, 1198
BlsI GCNGC 3 cut(s) 755, 917, 1199
BmcAI AGTACT 1 cut(s) 1346
BmiI GGNNCC 4 cut(s) 409, 662, 848, 1285
BmrI ACTGGG 1 cut(s) 1260
BmsI GCATC 6 cut(s) 21, 312, 541, 697, 985, 1091
BmuI ACTGGG 1 cut(s) 1260
BpiI GAAGAC 2 cut(s) 603, 1103
Bpu14I TTCGAA 2 cut(s) 8, 228
BpuEI CTTGAG 2 cut(s) 433, 1135
Bsa29I ATCGAT 1 cut(s) 1378
BsaBI GATNNNNATC 2 cut(s) 282, 555
BsaWI WCCGGW 1 cut(s) 1437
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 318
Bse1I ACTGG 1 cut(s) 1255
Bse8I GATNNNNATC 2 cut(s) 282, 555
BseCI ATCGAT 1 cut(s) 1378
BseGI GGATG 3 cut(s) 283, 327, 337
BseJI GATNNNNATC 2 cut(s) 282, 555
BseLI CCNNNNNNNGG 2 cut(s) 289, 318
BseMII CTCAG 2 cut(s) 656, 971
BseNI ACTGG 1 cut(s) 1255
BseRI GAGGAG 1 cut(s) 1241
BseXI GCAGC 3 cut(s) 740, 902, 1184
BsgI GTGCAG 1 cut(s) 1183
BshNI GGYRCC 1 cut(s) 660
BshVI ATCGAT 1 cut(s) 1378
BsiSI CCGG 1 cut(s) 1438
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 289, 318
BsmAI GTCTC 1 cut(s) 780
BsmFI GGGAC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 224
Bsp119I TTCGAA 2 cut(s) 8, 228
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 5 cut(s) 20, 277, 846, 1363, 1379
BspACI CCGC 3 cut(s) 45, 692, 817
BspCNI CTCAG 2 cut(s) 657, 972
BspDI ATCGAT 1 cut(s) 1378
BspHI TCATGA 1 cut(s) 1191
BspLI GGNNCC 4 cut(s) 409, 662, 848, 1285
BspPI GGATC 4 cut(s) 15, 285, 841, 854
BspT104I TTCGAA 2 cut(s) 8, 228
BspT107I GGYRCC 1 cut(s) 660
BspTI CTTAAG 1 cut(s) 719
BsrGI TGTACA 1 cut(s) 246
BsrI ACTGG 1 cut(s) 1255
BssMI GATC 5 cut(s) 20, 277, 846, 1363, 1379
Bst6I CTCTTC 1 cut(s) 954
BstAFI CTTAAG 1 cut(s) 719
BstAUI TGTACA 1 cut(s) 246
BstBI TTCGAA 2 cut(s) 8, 228
BstC8I GCNNGC 4 cut(s) 869, 1029, 1186, 1282
BstDEI CTNAG 4 cut(s) 665, 904, 980, 991
BstF5I GGATG 3 cut(s) 283, 327, 337
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 5 cut(s) 23, 280, 849, 1366, 1382
BstMAI GTCTC 1 cut(s) 780
BstMBI GATC 5 cut(s) 20, 277, 846, 1363, 1379
BstMWI GCNNNNNNNGC 3 cut(s) 107, 452, 1194
BstNSI RCATGY 3 cut(s) 262, 1188, 1248
BstV1I GCAGC 3 cut(s) 740, 902, 1184
BstV2I GAAGAC 2 cut(s) 603, 1103
BstX2I RGATCY 2 cut(s) 20, 846
BstYI RGATCY 2 cut(s) 20, 846
Bsu15I ATCGAT 1 cut(s) 1378
BsuI GTATCC 2 cut(s) 577, 699
BsuTUI ATCGAT 1 cut(s) 1378
BtsCI GGATG 3 cut(s) 283, 327, 337
BtsIMutI CAGTG 2 cut(s) 977, 1248
Cac8I GCNNGC 4 cut(s) 869, 1029, 1186, 1282
CciI TCATGA 1 cut(s) 1191
CfoI GCGC 1 cut(s) 15
ClaI ATCGAT 1 cut(s) 1378
Csp6I GTAC 3 cut(s) 247, 1261, 1345
CviQI GTAC 3 cut(s) 247, 1261, 1345
DdeI CTNAG 4 cut(s) 665, 904, 980, 991
DpnI GATC 5 cut(s) 22, 279, 848, 1365, 1381
DpnII GATC 5 cut(s) 20, 277, 846, 1363, 1379
DraIII CACNNNGTG 1 cut(s) 1157
Eam1104I CTCTTC 1 cut(s) 954
EarI CTCTTC 1 cut(s) 954
Eco32I GATATC 1 cut(s) 1219
Eco57I CTGAAG 2 cut(s) 171, 531
EcoRI GAATTC 2 cut(s) 679, 1063
EcoRV GATATC 1 cut(s) 1219
EcoT22I ATGCAT 1 cut(s) 1186
FaqI GGGAC 1 cut(s) 35
FauI CCCGC 2 cut(s) 52, 824
Fnu4HI GCNGC 3 cut(s) 754, 916, 1198
FokI GGATG 3 cut(s) 270, 324, 334
Fsp4HI GCNGC 3 cut(s) 754, 916, 1198
FspBI CTAG 6 cut(s) 252, 264, 326, 888, 1277, 1350
GlaI GCGC 1 cut(s) 14
GluI GCNGC 3 cut(s) 754, 916, 1198
HapII CCGG 1 cut(s) 1438
HhaI GCGC 1 cut(s) 15
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HinfI GANTC 7 cut(s) 61, 127, 331, 350, 488, 744, 1099
HpaI GTTAAC 1 cut(s) 423
HpaII CCGG 1 cut(s) 1438
HphI GGTGA 3 cut(s) 70, 272, 977
Hpy166II GTNNAC 5 cut(s) 249, 269, 423, 1004, 1111
Hpy188I TCNGA 8 cut(s) 60, 151, 550, 789, 802, 1021, 1073, 1297
Hpy188III TCNNGA 3 cut(s) 37, 1192, 1367
Hpy8I GTNNAC 5 cut(s) 249, 269, 423, 1004, 1111
HpyAV CCTTC 5 cut(s) 77, 91, 351, 860, 1333
HpyCH4IV ACGT 2 cut(s) 564, 1161
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 452, 1194
HpyF3I CTNAG 4 cut(s) 665, 904, 980, 991
HpySE526I ACGT 2 cut(s) 564, 1161
HspAI GCGC 1 cut(s) 13
KspAI GTTAAC 1 cut(s) 423
Kzo9I GATC 5 cut(s) 20, 277, 846, 1363, 1379
LmnI GCTCC 3 cut(s) 39, 536, 1289
Lsp1109I GCAGC 3 cut(s) 740, 902, 1184
LweI GCATC 6 cut(s) 21, 312, 541, 697, 985, 1091
MaeI CTAG 6 cut(s) 252, 264, 326, 888, 1277, 1350
MaeII ACGT 2 cut(s) 564, 1161
MaeIII GTNAC 5 cut(s) 120, 394, 1039, 1129, 1157
MalI GATC 5 cut(s) 22, 279, 848, 1365, 1381
MboI GATC 5 cut(s) 20, 277, 846, 1363, 1379
MboII GAAGA 9 cut(s) 40, 190, 537, 608, 705, 971, 1066, 1108, 1250
MfeI CAATTG 2 cut(s) 102, 1267
MflI RGATCY 2 cut(s) 20, 846
MlyI GAGTC 3 cut(s) 121, 340, 1093
MnlI CCTC 9 cut(s) 181, 408, 955, 975, 1219, 1222, 1274, 1328, 1393
Mph1103I ATGCAT 1 cut(s) 1186
MseI TTAA 8 cut(s) 422, 629, 701, 720, 878, 909, 941, 1092
MspCI CTTAAG 1 cut(s) 719
MspI CCGG 1 cut(s) 1438
MunI CAATTG 2 cut(s) 102, 1267
Mva1269I GAATGC 1 cut(s) 224
MwoI GCNNNNNNNGC 3 cut(s) 107, 452, 1194
NdeII GATC 5 cut(s) 20, 277, 846, 1363, 1379
NlaIV GGNNCC 4 cut(s) 409, 662, 848, 1285
NmuCI GTSAC 3 cut(s) 394, 1129, 1157
NsiI ATGCAT 1 cut(s) 1186
NspI RCATGY 3 cut(s) 262, 1188, 1248
NspV TTCGAA 2 cut(s) 8, 228
PaeI GCATGC 1 cut(s) 1188
PagI TCATGA 1 cut(s) 1191
PciI ACATGT 1 cut(s) 258
PctI GAATGC 1 cut(s) 224
PfeI GAWTC 4 cut(s) 61, 350, 488, 744
PflMI CCANNNNNTGG 2 cut(s) 289, 318
PkrI GCNGC 3 cut(s) 755, 917, 1199
PleI GAGTC 3 cut(s) 121, 339, 1093
PpsI GAGTC 3 cut(s) 121, 339, 1093
PscI ACATGT 1 cut(s) 258
PspN4I GGNNCC 4 cut(s) 409, 662, 848, 1285
PsuI RGATCY 2 cut(s) 20, 846
RsaI GTAC 3 cut(s) 248, 1262, 1346
RsaNI GTAC 3 cut(s) 247, 1261, 1345
SaqAI TTAA 8 cut(s) 422, 629, 701, 720, 878, 909, 941, 1092
SatI GCNGC 3 cut(s) 754, 916, 1198
Sau3AI GATC 5 cut(s) 20, 277, 846, 1363, 1379
ScaI AGTACT 1 cut(s) 1346
SchI GAGTC 3 cut(s) 121, 340, 1093
SfaNI GCATC 6 cut(s) 21, 312, 541, 697, 985, 1091
SfuI TTCGAA 2 cut(s) 8, 228
SmlI CTYRAG 3 cut(s) 412, 719, 1114
SmoI CTYRAG 3 cut(s) 412, 719, 1114
SphI GCATGC 1 cut(s) 1188
SsiI CCGC 3 cut(s) 45, 692, 817
SspI AATATT 1 cut(s) 939
SspMI CTAG 6 cut(s) 252, 264, 326, 888, 1277, 1350
TaiI ACGT 2 cut(s) 567, 1164
TaqI TCGA 6 cut(s) 8, 228, 391, 617, 1366, 1378
TatI WGTACW 2 cut(s) 246, 1344
TfiI GAWTC 4 cut(s) 61, 350, 488, 744
Tru1I TTAA 8 cut(s) 422, 629, 701, 720, 878, 909, 941, 1092
Tru9I TTAA 8 cut(s) 422, 629, 701, 720, 878, 909, 941, 1092
TscAI CASTG 2 cut(s) 984, 1255
TseFI GTSAC 3 cut(s) 394, 1129, 1157
TseI GCWGC 3 cut(s) 753, 915, 1197
Tsp45I GTSAC 3 cut(s) 394, 1129, 1157
TspDTI ATGAA 8 cut(s) 124, 306, 501, 531, 824, 1005, 1180, 1309
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 2 cut(s) 984, 1255
Van91I CCANNNNNTGG 2 cut(s) 289, 318
Vha464I CTTAAG 1 cut(s) 719
XapI RAATTY 3 cut(s) 381, 679, 1063
XceI RCATGY 3 cut(s) 262, 1188, 1248
XspI CTAG 6 cut(s) 252, 264, 326, 888, 1277, 1350
ZrmI AGTACT 1 cut(s) 1346
Zsp2I ATGCAT 1 cut(s) 1186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.