Rh7AG346000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006230
Physical Location & Seq
Forward (+)
43705776 .. 43711176
5401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG346000.1

Sequence Viewer

Length: 1323 bp
ATGGATGTCATGACCATGTGTTCAACTGTTCCAGCTTATAGACTCATCATTCTATACTTGGACCACATGGAGCTGCATGAAGTCTATGGAGTTGACCCGGATGATGATGTATTCATGTATGAAGACTTCAGTTTCGGTGAAGTTGGAAGTAGTGGTGTGGTTATCGAAGAACTGCCGGATGAGCCTATACCTGGCAGAAACAAGGGAGTCTCTATAAGGGAGGCCGAGGACTGTGTGCCAACTCAAGGTAGCATTGCTTGTGGGATTGGTCCAAGGGAGAAGGGAAAACAGTTTATGCTAGAGTACAATTCAGCTTCAAAGCATAAAGAAAGTGGGAGGCAAACTTCAAGTGGGGCAGGTCAGTCAACTATATATGCTGGTTCAAGTCATGTTGGGCAGTCAAGTGTTGGTCAAGGTTCAAGTGAACATGGGCAGTCAAGTTTAGGTCAACATTCAAGAAGTGTGGGTCAAAGCATTGATGTACAGCAAGAAGGTCCGAGCTTGAGGGATATTGAACTCTTGGACTATCAACAATCATTTGGTGGTGGTTTGTTAGATGAAGAGGATTATGAGGAGCAGCCGGGCAGTGAAGAAGAAGATGGGAGTGAGGATGATGATTACAATCCTCTAGCAGATGATGATGATTATGAGAAGATGGCAAGCAAACTGGTGCAGGAAATGGATATATTTGAAACTGAAAGTGGAGAAGTTGGCAGCCGAGTACTGTCCAAGGGTCTAAAGGTGCCGATTTTGAAAAGAATATACGCATTAGTGGTTCCACTGTCTTTACAGGAACCAATTGATTGGTCTAACGCTGAAGGCAGTTGTAATTATTTTGGCAATGAACTGAAATTGGAACATCTACAATGTCTCATTCATTGTTTGTTCAAAGAGCTAGATAAGCTGCTTAAATTCCTATTCTCTGCTTTATCTTATGCCTCTGCAAATAGAGCTCACAAGCACAATGACTCTGACAAAGATATGGCGGTCGATGTTGATGAACTAACCTTGCTTTTAAGATGCTGTGTATCTTTGAGCATGGTGGACTCAAGTTTAGTAATGGAGAATACCCAATTTCTTCTTTCGGTTCTTGGGAAATTGATTGCTTTGGTTACAAGTGGATGGAGTGAGAAAGAGTCTGTCAGCTTTTGGAAGTCTATTTCTTGTGAATGCACGTATACGGATGCTGGTGGAACCTATGTTTCGGAAGACTTTGTTGCTTCCTTATGTTTCTTACAGCCTTCTAATCTGTGGCACCCGGTTCTCTGTGCATTGCTTGAGTTTATGATGAACCAGAATCTGAGAACTTTCTCAAAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

440

Amino Acids

48.63

Weight (kDa)

4.42

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7812 PF25104 337 - 431 9.4e-19 Domain of unknown function (DUF7812)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 347
AccB1I GGYRCC 2 cut(s) 742, 1254
AccI GTMKAC 1 cut(s) 1178
AciI CCGC 1 cut(s) 986
AcsI RAATTY 1 cut(s) 911
AcuI CTGAAG 2 cut(s) 112, 837
AfaI GTAC 3 cut(s) 305, 483, 723
AfiI CCNNNNNNNGG 2 cut(s) 191, 245
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 8 cut(s) 35, 73, 314, 501, 895, 904, 953, 1146
AluI AGCT 8 cut(s) 35, 73, 314, 501, 895, 904, 953, 1146
Alw21I GWGCWC 1 cut(s) 955
Alw26I GTCTC 2 cut(s) 214, 875
AlwNI CAGNNNCTG 1 cut(s) 1300
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 4 cut(s) 73, 577, 714, 904
ApoI RAATTY 1 cut(s) 911
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AspS9I GGNCC 3 cut(s) 61, 269, 494
AsuC2I CCSGG 3 cut(s) 98, 582, 1259
AsuHPI GGTGA 1 cut(s) 149
AvaII GGWCC 3 cut(s) 61, 269, 494
BanI GGYRCC 2 cut(s) 742, 1254
BanII GRGCYC 1 cut(s) 955
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
BbsI GAAGAC 2 cut(s) 129, 1215
Bbv12I GWGCWC 1 cut(s) 955
BbvI GCAGC 4 cut(s) 60, 589, 726, 891
BccI CCATC 3 cut(s) 593, 649, 1116
BciT130I CCWGG 1 cut(s) 192
BcnI CCSGG 3 cut(s) 98, 582, 1259
BcoDI GTCTC 2 cut(s) 214, 875
BfaI CTAG 4 cut(s) 299, 629, 896, 1321
BfuAI ACCTGC 1 cut(s) 347
BisI GCNGC 4 cut(s) 74, 578, 715, 905
BlsI GCNGC 4 cut(s) 75, 579, 716, 906
BmcAI AGTACT 1 cut(s) 723
Bme1390I CCNGG 4 cut(s) 98, 192, 582, 1259
Bme18I GGWCC 3 cut(s) 61, 269, 494
BmgT120I GGNCC 3 cut(s) 61, 269, 494
BmiI GGNNCC 5 cut(s) 744, 777, 795, 1195, 1256
BmrFI CCNGG 4 cut(s) 98, 192, 582, 1259
BmsI GCATC 2 cut(s) 1010, 1174
BpiI GAAGAC 2 cut(s) 129, 1215
BpuEI CTTGAG 4 cut(s) 228, 523, 1033, 1298
BpuMI CCSGG 3 cut(s) 98, 582, 1259
BsaAI YACGTR 1 cut(s) 1176
BsaBI GATNNNNATC 1 cut(s) 621
BsaJI CCNNGG 3 cut(s) 225, 272, 729
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 245
Bse1I ACTGG 1 cut(s) 672
Bse3DI GCAATG 3 cut(s) 252, 847, 1271
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 3 cut(s) 225, 272, 729
BseGI GGATG 6 cut(s) 10, 106, 184, 616, 1127, 1189
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 2 cut(s) 191, 245
BseMI GCAATG 3 cut(s) 252, 847, 1271
BseMII CTCAG 1 cut(s) 1292
BseNI ACTGG 1 cut(s) 672
BseRI GAGGAG 1 cut(s) 587
BseXI GCAGC 4 cut(s) 60, 589, 726, 891
BsgI GTGCAG 1 cut(s) 692
Bsh1285I CGRYCG 1 cut(s) 990
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 2 cut(s) 742, 1254
BsiEI CGRYCG 1 cut(s) 990
BsiHKAI GWGCWC 1 cut(s) 955
BsiSI CCGG 4 cut(s) 98, 176, 581, 1259
BslI CCNNNNNNNGG 2 cut(s) 191, 245
BsmAI GTCTC 2 cut(s) 214, 875
BsmI GAATGC 1 cut(s) 1175
BsnI GGCC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 955
Bsp1407I TGTACA 1 cut(s) 481
BspACI CCGC 1 cut(s) 986
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 1293
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 5 cut(s) 744, 777, 795, 1195, 1256
BspMI ACCTGC 1 cut(s) 347
BspT107I GGYRCC 2 cut(s) 742, 1254
BsrDI GCAATG 3 cut(s) 252, 847, 1271
BsrGI TGTACA 1 cut(s) 481
BsrI ACTGG 1 cut(s) 672
BssECI CCNNGG 3 cut(s) 225, 272, 729
BssNAI GTATAC 1 cut(s) 1179
BssT1I CCWWGG 2 cut(s) 272, 729
Bst1107I GTATAC 1 cut(s) 1179
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 5 cut(s) 28, 233, 291, 726, 783
Bst6I CTCTTC 1 cut(s) 555
BstAUI TGTACA 1 cut(s) 481
BstBAI YACGTR 1 cut(s) 1176
BstC8I GCNNGC 1 cut(s) 661
BstDEI CTNAG 1 cut(s) 1301
BstF5I GGATG 6 cut(s) 10, 106, 184, 616, 1127, 1189
BstMAI GTCTC 2 cut(s) 214, 875
BstMCI CGRYCG 1 cut(s) 990
BstMWI GCNNNNNNNGC 3 cut(s) 181, 901, 950
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 4 cut(s) 96, 190, 580, 1257
BstV1I GCAGC 4 cut(s) 60, 589, 726, 891
BstV2I GAAGAC 2 cut(s) 129, 1215
BstXI CCANNNNNNTGG 1 cut(s) 804
BstZ17I GTATAC 1 cut(s) 1179
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 6 cut(s) 10, 106, 184, 616, 1127, 1189
BtsI GCAGTG 1 cut(s) 592
BtsIMutI CAGTG 2 cut(s) 592, 779
BveI ACCTGC 1 cut(s) 347
Cac8I GCNNGC 1 cut(s) 661
CaiI CAGNNNCTG 1 cut(s) 1300
CciI TCATGA 1 cut(s) 9
Cfr13I GGNCC 3 cut(s) 61, 269, 494
Csp6I GTAC 3 cut(s) 304, 482, 722
CspCI CAANNNNNGTGG 2 cut(s) 444, 479
CviAII CATG 8 cut(s) 10, 16, 67, 77, 115, 389, 428, 1039
CviQI GTAC 3 cut(s) 304, 482, 722
DdeI CTNAG 1 cut(s) 1301
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Ecl136II GAGCTC 1 cut(s) 953
Eco130I CCWWGG 2 cut(s) 272, 729
Eco24I GRGCYC 1 cut(s) 955
Eco47I GGWCC 3 cut(s) 61, 269, 494
Eco53kI GAGCTC 1 cut(s) 953
Eco57I CTGAAG 2 cut(s) 112, 837
EcoICRI GAGCTC 1 cut(s) 953
EcoRII CCWGG 1 cut(s) 190
EcoT14I CCWWGG 2 cut(s) 272, 729
EcoT38I GRGCYC 1 cut(s) 955
ErhI CCWWGG 2 cut(s) 272, 729
FaeI CATG 8 cut(s) 13, 19, 70, 80, 118, 392, 431, 1042
FatI CATG 8 cut(s) 9, 15, 66, 76, 114, 388, 427, 1038
FblI GTMKAC 1 cut(s) 1178
Fnu4HI GCNGC 4 cut(s) 74, 578, 715, 905
FokI GGATG 6 cut(s) 17, 113, 191, 623, 1134, 1196
FriOI GRGCYC 1 cut(s) 955
Fsp4HI GCNGC 4 cut(s) 74, 578, 715, 905
FspBI CTAG 4 cut(s) 299, 629, 896, 1321
GluI GCNGC 4 cut(s) 74, 578, 715, 905
HaeIII GGCC 1 cut(s) 224
HapII CCGG 4 cut(s) 98, 176, 581, 1259
Hin1II CATG 8 cut(s) 13, 19, 70, 80, 118, 392, 431, 1042
HincII GTYRAC 3 cut(s) 94, 366, 449
HindII GTYRAC 3 cut(s) 94, 366, 449
HinfI GANTC 6 cut(s) 42, 207, 968, 1046, 1136, 1297
HpaII CCGG 4 cut(s) 98, 176, 581, 1259
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 6 cut(s) 94, 366, 425, 449, 1045, 1179
Hpy188I TCNGA 4 cut(s) 498, 973, 1207, 1302
Hpy188III TCNNGA 2 cut(s) 10, 456
Hpy8I GTNNAC 6 cut(s) 94, 366, 425, 449, 1045, 1179
HpyAV CCTTC 4 cut(s) 274, 485, 812, 1251
HpyCH4III ACNGT 5 cut(s) 28, 233, 291, 726, 783
HpyCH4IV ACGT 1 cut(s) 1175
HpyCH4V TGCA 5 cut(s) 76, 673, 944, 1173, 1271
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 901, 950
HpyF3I CTNAG 1 cut(s) 1301
HpySE526I ACGT 1 cut(s) 1175
Hsp92II CATG 8 cut(s) 13, 19, 70, 80, 118, 392, 431, 1042
LmnI GCTCC 2 cut(s) 70, 574
Lsp1109I GCAGC 4 cut(s) 60, 589, 726, 891
LweI GCATC 2 cut(s) 1010, 1174
MaeI CTAG 4 cut(s) 299, 629, 896, 1321
MaeII ACGT 1 cut(s) 1175
MaeIII GTNAC 1 cut(s) 1111
MboII GAAGA 9 cut(s) 134, 179, 572, 602, 605, 608, 664, 1070, 1220
MfeI CAATTG 1 cut(s) 798
MhlI GDGCHC 1 cut(s) 955
MluCI AATT 7 cut(s) 307, 798, 829, 851, 911, 1073, 1097
MlyI GAGTC 5 cut(s) 36, 216, 962, 1040, 1145
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 9 cut(s) 214, 220, 330, 498, 556, 565, 601, 636, 949
MseI TTAA 2 cut(s) 909, 1016
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 4 cut(s) 98, 176, 581, 1259
MspR9I CCNGG 4 cut(s) 98, 192, 582, 1259
MunI CAATTG 1 cut(s) 798
Mva1269I GAATGC 1 cut(s) 1175
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 3 cut(s) 181, 901, 950
NciI CCSGG 3 cut(s) 98, 582, 1259
NlaIII CATG 8 cut(s) 13, 19, 70, 80, 118, 392, 431, 1042
NlaIV GGNNCC 5 cut(s) 744, 777, 795, 1195, 1256
NmeAIII GCCGAG 2 cut(s) 250, 743
PagI TCATGA 1 cut(s) 9
PctI GAATGC 1 cut(s) 1175
PfeI GAWTC 1 cut(s) 1297
PkrI GCNGC 4 cut(s) 75, 579, 716, 906
PleI GAGTC 5 cut(s) 36, 215, 962, 1040, 1144
PpsI GAGTC 5 cut(s) 36, 215, 962, 1040, 1144
Ppu21I YACGTR 1 cut(s) 1176
Psp124BI GAGCTC 1 cut(s) 955
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 5 cut(s) 744, 777, 795, 1195, 1256
PspPI GGNCC 3 cut(s) 61, 269, 494
PstNI CAGNNNCTG 1 cut(s) 1300
RsaI GTAC 3 cut(s) 305, 483, 723
RsaNI GTAC 3 cut(s) 304, 482, 722
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 955
SaqAI TTAA 2 cut(s) 909, 1016
SatI GCNGC 4 cut(s) 74, 578, 715, 905
Sau96I GGNCC 3 cut(s) 61, 269, 494
ScaI AGTACT 1 cut(s) 723
SchI GAGTC 5 cut(s) 36, 216, 962, 1040, 1145
ScrFI CCNGG 4 cut(s) 98, 192, 582, 1259
SduI GDGCHC 1 cut(s) 955
SfaNI GCATC 2 cut(s) 1010, 1174
SinI GGWCC 3 cut(s) 61, 269, 494
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 4 cut(s) 243, 502, 1048, 1277
SmoI CTYRAG 4 cut(s) 243, 502, 1048, 1277
Sse9I AATT 7 cut(s) 307, 798, 829, 851, 911, 1073, 1097
SsiI CCGC 1 cut(s) 986
SspMI CTAG 4 cut(s) 299, 629, 896, 1321
SstI GAGCTC 1 cut(s) 955
StyD4I CCNGG 4 cut(s) 96, 190, 580, 1257
StyI CCWWGG 2 cut(s) 272, 729
TaaI ACNGT 5 cut(s) 28, 233, 291, 726, 783
TaiI ACGT 1 cut(s) 1178
TaqI TCGA 2 cut(s) 165, 990
TasI AATT 7 cut(s) 307, 798, 829, 851, 911, 1073, 1097
TatI WGTACW 3 cut(s) 303, 481, 721
TfiI GAWTC 1 cut(s) 1297
Tru1I TTAA 2 cut(s) 909, 1016
Tru9I TTAA 2 cut(s) 909, 1016
TscAI CASTG 2 cut(s) 592, 786
TseI GCWGC 4 cut(s) 73, 577, 714, 904
TspDTI ATGAA 8 cut(s) 93, 103, 135, 573, 858, 866, 1014, 1304
TspGWI ACGGA 1 cut(s) 1196
TspRI CASTG 2 cut(s) 592, 786
VpaK11BI GGWCC 3 cut(s) 61, 269, 494
XapI RAATTY 1 cut(s) 911
XmiI GTMKAC 1 cut(s) 1178
XspI CTAG 4 cut(s) 299, 629, 896, 1321
ZrmI AGTACT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.