Rh7BG383100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006230
Physical Location & Seq
Reverse (-)
41447968 .. 41453150
5183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG383100.1

Sequence Viewer

Length: 1620 bp
ATGCGGAGACTGTTAAGAAAGTACTTTGTGGCTGTTGATTCTGCTTCTTGCACAAATGAAAGGTTATTTAATAACCTTGTTAAAAGTGATATTGGAAGTGTTCTGGAGGTGATTTCTGTTCACTTTATTTTATCAGTTTATGATGAGCCAGCATCTGAGAACTTTCTCAAAAGACTATACTTGCAATTCAGTAAGAATTTTAGAGGTCCTGAACTGAGCCTGACTGCAGCATTGCCTCTGCTTCTCAACCCTATCATGCTTTCTGCGCCAAAAATGTTACAGACTCATTTCATTTTATTAGTTTCTGAAGCAATAGATATAGACACCTCTTTGAAGAATGTTAGACCAGATCTTAGAAATATGGACTGCTACCTAACAGCATTCGAAAGGTCAGTTGTTTTGTACACTAGCCACATGTCTAGTTCACTTATGGATCACCATCCGTTGGGTGTTAGCTGTTCTCATGCCAATTCATGGATGCTAGGGAGTCATCATCCTTCTTTTGAATCTTGTATTCAGCAAGGAACGAGAGAAAGAATTTGTAATCGAGTGACCCATTTAGGTTCCTTGAGGCAGTTAACAAAGTCTGGTATGATGGCTGCTTCTACTGCATACATAAATGAGAACCAACATATTTTCAATGAATCGTGTAAAGATGATATTCTGTCAGTCTTACATAGCATAATACATGGAGCTTCATCTTCAGATGCCAATCATAACGTGTTTTATAGAAAAGGGAATACAAACCCAGAAGACATTTATCTTCTTGCTTCGATATTGAAGTTAATGAGTAGTTCCTTGTTGAAAGTTATTTGGTGCCTGAGAAATGGTGGGAATTCGGGGTATCCGCAAACCTTAAAAGATGCTTCTTCACTTAAGGAATATGATTTTGTGGTGGGTATCATTGGCTGCTTTATTCAATTCAATTTGTCTCTACCTAATCAGAAGTTCTTATCTGACATGATGAAAACCCGCCCGATGATACATAAGACTTCCAAGTGGATCCTTCTGCATTTTTTGGGCTTGCTGTCATTAAGTTTTGCTAGCGGGATTGATTTCTTAGTTAAGGGCTGCATATCAATAATCATGGCAATATTAAACCTATGTGCTTTTGAAGAGGGTGATATAGTTGCACTGAGGTCATTCTTAGATGCTGGTTCACAATCTGTTTCATCTGAATTGCCTGCTGATAAGGTTACACAGGCTGTGAAGAAACAGAAATCCATCAGAAAAGTTGCATCGAAGTTTCAGAAGACTCAAAATGTTTACTTGAGCAAACATTCTGTCACACGCCACCATAAGAAAGCACAGAGTGACGTAGCAAAAACTTCCAAAAATGCATGCTTCATGAGCTGCACAAGAGAGTTTAGTGATATCATGGAGGAGGGAACAGAAGAAACCTGCACTGGGGAGATGTACCTCAATTGCACACTAGCAGGCTCCAAGAAGTCTGACCTTGATGATTTGGCAGACTTCATTGTGTGCAAACCAGGGAAGGAGTACTCTAGCTGGTTGAAAGATCGAGAAAAGTATCGATCTTGGAAAGTAAAAAAAGAGGCAGTTGTAAGGTGGGAGAAAAAGAAAAGGACTTATCGGAAAGTTAGAAGTAAAAGATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

539

Amino Acids

60.9

Weight (kDa)

9.23

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7812 PF25104 1 - 379 1.3e-166 Domain of unknown function (DUF7812)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1409
AccB1I GGYRCC 1 cut(s) 816
AccB7I CCANNNNNTGG 2 cut(s) 445, 474
AciI CCGC 4 cut(s) 4, 848, 973, 1047
AclWI GGATC 3 cut(s) 441, 997, 1010
AcsI RAATTY 3 cut(s) 196, 537, 835
AcuI CTGAAG 2 cut(s) 327, 687
AdeI CACNNNGTG 1 cut(s) 1313
AfaI GTAC 4 cut(s) 23, 404, 1418, 1502
AfiI CCNNNNNNNGG 3 cut(s) 445, 474, 1407
AflII CTTAAG 1 cut(s) 875
AflIII ACRYGT 2 cut(s) 414, 720
AgsI TTSAA 9 cut(s) 334, 506, 640, 781, 805, 920, 925, 1115, 1516
AjnI CCWGG 1 cut(s) 1489
AluBI AGCT 4 cut(s) 456, 695, 1353, 1509
AluI AGCT 4 cut(s) 456, 695, 1353, 1509
Alw26I GTCTC 1 cut(s) 936
AlwI GGATC 3 cut(s) 441, 997, 1010
AlwNI CAGNNNCTG 1 cut(s) 155
ApeKI GCWGC 5 cut(s) 227, 599, 909, 1071, 1353
ApoI RAATTY 3 cut(s) 196, 537, 835
ArsI GACNNNNNNTTYG 2 cut(s) 1269, 1301
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 3 cut(s) 121, 428, 1133
AsuII TTCGAA 1 cut(s) 384
AsuNHI GCTAGC 1 cut(s) 1043
AvaII GGWCC 1 cut(s) 206
BamHI GGATCC 1 cut(s) 1002
BanI GGYRCC 1 cut(s) 816
BbsI GAAGAC 2 cut(s) 759, 1259
BbvI GCAGC 5 cut(s) 239, 586, 896, 1058, 1340
BccI CCATC 3 cut(s) 447, 589, 1232
BciT130I CCWGG 1 cut(s) 1491
BciVI GTATCC 1 cut(s) 855
BcoDI GTCTC 1 cut(s) 936
BfaI CTAG 6 cut(s) 408, 420, 482, 1044, 1433, 1506
BfmI CTRYAG 1 cut(s) 225
BfrI CTTAAG 1 cut(s) 875
BfuAI ACCTGC 1 cut(s) 1409
BfuI GTATCC 1 cut(s) 855
BglII AGATCT 1 cut(s) 349
BisI GCNGC 5 cut(s) 228, 600, 910, 1072, 1354
BlsI GCNGC 5 cut(s) 229, 601, 911, 1073, 1355
BmcAI AGTACT 2 cut(s) 23, 1502
Bme1390I CCNGG 1 cut(s) 1491
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 4 cut(s) 565, 818, 1004, 1441
BmrFI CCNGG 1 cut(s) 1491
BmrI ACTGGG 1 cut(s) 1416
BmsI GCATC 6 cut(s) 161, 468, 697, 853, 1141, 1247
BmtI GCTAGC 1 cut(s) 1047
BmuI ACTGGG 1 cut(s) 1416
BpiI GAAGAC 2 cut(s) 759, 1259
BpmI CTGGAG 1 cut(s) 125
Bpu14I TTCGAA 1 cut(s) 384
BpuEI CTTGAG 2 cut(s) 589, 1291
Bsa29I ATCGAT 1 cut(s) 1534
BsaBI GATNNNNATC 2 cut(s) 438, 711
BsaJI CCNNGG 1 cut(s) 1490
Bsc4I CCNNNNNNNGG 3 cut(s) 445, 474, 1407
Bse1I ACTGG 1 cut(s) 1411
Bse3DI GCAATG 1 cut(s) 230
Bse8I GATNNNNATC 2 cut(s) 438, 711
BseBI CCWGG 1 cut(s) 1491
BseCI ATCGAT 1 cut(s) 1534
BseDI CCNNGG 1 cut(s) 1490
BseGI GGATG 3 cut(s) 439, 483, 493
BseJI GATNNNNATC 2 cut(s) 438, 711
BseLI CCNNNNNNNGG 3 cut(s) 445, 474, 1407
BseMI GCAATG 1 cut(s) 230
BseMII CTCAG 4 cut(s) 147, 206, 812, 1127
BseNI ACTGG 1 cut(s) 1411
BseRI GAGGAG 1 cut(s) 1397
BseXI GCAGC 5 cut(s) 239, 586, 896, 1058, 1340
BsgI GTGCAG 2 cut(s) 1339, 1387
BshNI GGYRCC 1 cut(s) 816
BshVI ATCGAT 1 cut(s) 1534
BslI CCNNNNNNNGG 3 cut(s) 445, 474, 1407
BsmAI GTCTC 1 cut(s) 936
BsmI GAATGC 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 384
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 6 cut(s) 349, 433, 1002, 1519, 1535, 1613
BspACI CCGC 4 cut(s) 4, 848, 973, 1047
BspCNI CTCAG 4 cut(s) 148, 207, 813, 1128
BspDI ATCGAT 1 cut(s) 1534
BspHI TCATGA 1 cut(s) 1347
BspLI GGNNCC 4 cut(s) 565, 818, 1004, 1441
BspMAI CTGCAG 1 cut(s) 229
BspMI ACCTGC 1 cut(s) 1409
BspOI GCTAGC 1 cut(s) 1047
BspPI GGATC 3 cut(s) 441, 997, 1010
BspT104I TTCGAA 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 816
BspTI CTTAAG 1 cut(s) 875
BsrDI GCAATG 1 cut(s) 230
BsrGI TGTACA 1 cut(s) 402
BsrI ACTGG 1 cut(s) 1411
BssECI CCNNGG 1 cut(s) 1490
BssMI GATC 6 cut(s) 349, 433, 1002, 1519, 1535, 1613
Bst2UI CCWGG 1 cut(s) 1491
Bst4CI ACNGT 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 1110
BstAFI CTTAAG 1 cut(s) 875
BstAUI TGTACA 1 cut(s) 402
BstBI TTCGAA 1 cut(s) 384
BstC8I GCNNGC 6 cut(s) 150, 1025, 1045, 1185, 1342, 1438
BstDEI CTNAG 7 cut(s) 156, 215, 353, 821, 1060, 1136, 1147
BstF5I GGATG 3 cut(s) 439, 483, 493
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 6 cut(s) 352, 436, 1005, 1522, 1538, 1616
BstMAI GTCTC 1 cut(s) 936
BstMBI GATC 6 cut(s) 349, 433, 1002, 1519, 1535, 1613
BstMWI GCNNNNNNNGC 3 cut(s) 265, 608, 1350
BstNI CCWGG 1 cut(s) 1491
BstNSI RCATGY 2 cut(s) 418, 1344
BstSCI CCNGG 1 cut(s) 1489
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 5 cut(s) 239, 586, 896, 1058, 1340
BstV2I GAAGAC 2 cut(s) 759, 1259
BstX2I RGATCY 2 cut(s) 349, 1002
BstYI RGATCY 2 cut(s) 349, 1002
Bsu15I ATCGAT 1 cut(s) 1534
BsuI GTATCC 1 cut(s) 855
BsuTUI ATCGAT 1 cut(s) 1534
BtsCI GGATG 3 cut(s) 439, 483, 493
BtsIMutI CAGTG 2 cut(s) 1133, 1404
BveI ACCTGC 1 cut(s) 1409
Cac8I GCNNGC 6 cut(s) 150, 1025, 1045, 1185, 1342, 1438
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 1 cut(s) 1347
CfoI GCGC 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 206
ClaI ATCGAT 1 cut(s) 1534
Csp6I GTAC 4 cut(s) 22, 403, 1417, 1501
CviQI GTAC 4 cut(s) 22, 403, 1417, 1501
DdeI CTNAG 7 cut(s) 156, 215, 353, 821, 1060, 1136, 1147
DpnI GATC 6 cut(s) 351, 435, 1004, 1521, 1537, 1615
DpnII GATC 6 cut(s) 349, 433, 1002, 1519, 1535, 1613
DraIII CACNNNGTG 1 cut(s) 1313
Eam1104I CTCTTC 1 cut(s) 1110
EarI CTCTTC 1 cut(s) 1110
Eco32I GATATC 1 cut(s) 1375
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 2 cut(s) 327, 687
EcoO109I RGGNCCY 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 835
EcoRII CCWGG 1 cut(s) 1489
EcoRV GATATC 1 cut(s) 1375
EcoT22I ATGCAT 1 cut(s) 1342
FauI CCCGC 2 cut(s) 980, 1040
Fnu4HI GCNGC 5 cut(s) 228, 600, 910, 1072, 1354
FokI GGATG 3 cut(s) 426, 480, 490
Fsp4HI GCNGC 5 cut(s) 228, 600, 910, 1072, 1354
FspBI CTAG 6 cut(s) 408, 420, 482, 1044, 1433, 1506
GlaI GCGC 1 cut(s) 267
GluI GCNGC 5 cut(s) 228, 600, 910, 1072, 1354
GsuI CTGGAG 1 cut(s) 125
HhaI GCGC 1 cut(s) 268
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HinfI GANTC 6 cut(s) 38, 283, 487, 506, 644, 1255
HpaI GTTAAC 1 cut(s) 579
HphI GGTGA 3 cut(s) 121, 428, 1133
Hpy166II GTNNAC 6 cut(s) 121, 405, 425, 579, 1160, 1267
Hpy188III TCNNGA 4 cut(s) 104, 209, 1348, 1523
Hpy8I GTNNAC 6 cut(s) 121, 405, 425, 579, 1160, 1267
HpyAV CCTTC 3 cut(s) 507, 1016, 1489
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4IV ACGT 2 cut(s) 720, 1317
HpyF10VI GCNNNNNNNGC 3 cut(s) 265, 608, 1350
HpyF3I CTNAG 7 cut(s) 156, 215, 353, 821, 1060, 1136, 1147
HpySE526I ACGT 2 cut(s) 720, 1317
HspAI GCGC 1 cut(s) 266
KspAI GTTAAC 1 cut(s) 579
Kzo9I GATC 6 cut(s) 349, 433, 1002, 1519, 1535, 1613
LmnI GCTCC 2 cut(s) 692, 1445
Lsp1109I GCAGC 5 cut(s) 239, 586, 896, 1058, 1340
LweI GCATC 6 cut(s) 161, 468, 697, 853, 1141, 1247
MaeI CTAG 6 cut(s) 408, 420, 482, 1044, 1433, 1506
MaeII ACGT 2 cut(s) 720, 1317
MaeIII GTNAC 5 cut(s) 276, 550, 1195, 1285, 1313
MalI GATC 6 cut(s) 351, 435, 1004, 1521, 1537, 1615
MboI GATC 6 cut(s) 349, 433, 1002, 1519, 1535, 1613
MboII GAAGA 9 cut(s) 346, 693, 755, 764, 861, 1127, 1222, 1264, 1406
MfeI CAATTG 1 cut(s) 1423
MflI RGATCY 2 cut(s) 349, 1002
MluCI AATT 9 cut(s) 185, 196, 469, 537, 835, 920, 925, 1178, 1423
MlyI GAGTC 3 cut(s) 277, 496, 1249
Mph1103I ATGCAT 1 cut(s) 1342
MspCI CTTAAG 1 cut(s) 875
MspR9I CCNGG 1 cut(s) 1491
MunI CAATTG 1 cut(s) 1423
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 1 cut(s) 1491
MwoI GCNNNNNNNGC 3 cut(s) 265, 608, 1350
NdeII GATC 6 cut(s) 349, 433, 1002, 1519, 1535, 1613
NheI GCTAGC 1 cut(s) 1043
NlaIV GGNNCC 4 cut(s) 565, 818, 1004, 1441
NmuCI GTSAC 3 cut(s) 550, 1285, 1313
NsiI ATGCAT 1 cut(s) 1342
NspI RCATGY 2 cut(s) 418, 1344
NspV TTCGAA 1 cut(s) 384
PaeI GCATGC 1 cut(s) 1344
PagI TCATGA 1 cut(s) 1347
PciI ACATGT 1 cut(s) 414
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 3 cut(s) 38, 506, 644
PflMI CCANNNNNTGG 2 cut(s) 445, 474
PkrI GCNGC 5 cut(s) 229, 601, 911, 1073, 1355
PleI GAGTC 3 cut(s) 277, 495, 1249
PpsI GAGTC 3 cut(s) 277, 495, 1249
PpuMI RGGWCCY 1 cut(s) 206
PscI ACATGT 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 1489
PspGI CCWGG 1 cut(s) 1489
PspN4I GGNNCC 4 cut(s) 565, 818, 1004, 1441
PspPI GGNCC 1 cut(s) 206
PspPPI RGGWCCY 1 cut(s) 206
PstI CTGCAG 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 2 cut(s) 349, 1002
RsaI GTAC 4 cut(s) 23, 404, 1418, 1502
RsaNI GTAC 4 cut(s) 22, 403, 1417, 1501
SatI GCNGC 5 cut(s) 228, 600, 910, 1072, 1354
Sau3AI GATC 6 cut(s) 349, 433, 1002, 1519, 1535, 1613
Sau96I GGNCC 1 cut(s) 206
ScaI AGTACT 2 cut(s) 23, 1502
SchI GAGTC 3 cut(s) 277, 496, 1249
ScrFI CCNGG 1 cut(s) 1491
SfaNI GCATC 6 cut(s) 161, 468, 697, 853, 1141, 1247
SfcI CTRYAG 1 cut(s) 225
SfuI TTCGAA 1 cut(s) 384
SinI GGWCC 1 cut(s) 206
SmlI CTYRAG 3 cut(s) 568, 875, 1270
SmoI CTYRAG 3 cut(s) 568, 875, 1270
SphI GCATGC 1 cut(s) 1344
Sse9I AATT 9 cut(s) 185, 196, 469, 537, 835, 920, 925, 1178, 1423
SsiI CCGC 4 cut(s) 4, 848, 973, 1047
SspI AATATT 1 cut(s) 1095
SspMI CTAG 6 cut(s) 408, 420, 482, 1044, 1433, 1506
StyD4I CCNGG 1 cut(s) 1489
TaaI ACNGT 1 cut(s) 12
TaiI ACGT 2 cut(s) 723, 1320
TaqI TCGA 6 cut(s) 384, 547, 773, 1241, 1522, 1534
TasI AATT 9 cut(s) 185, 196, 469, 537, 835, 920, 925, 1178, 1423
TatI WGTACW 3 cut(s) 21, 402, 1500
TfiI GAWTC 3 cut(s) 38, 506, 644
TscAI CASTG 2 cut(s) 1140, 1411
TseFI GTSAC 3 cut(s) 550, 1285, 1313
TseI GCWGC 5 cut(s) 227, 599, 909, 1071, 1353
Tsp45I GTSAC 3 cut(s) 550, 1285, 1313
TspDTI ATGAA 9 cut(s) 72, 280, 462, 657, 687, 980, 1161, 1336, 1465
TspGWI ACGGA 1 cut(s) 432
TspRI CASTG 2 cut(s) 1140, 1411
Van91I CCANNNNNTGG 2 cut(s) 445, 474
Vha464I CTTAAG 1 cut(s) 875
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 3 cut(s) 196, 537, 835
XceI RCATGY 2 cut(s) 418, 1344
XspI CTAG 6 cut(s) 408, 420, 482, 1044, 1433, 1506
ZrmI AGTACT 2 cut(s) 23, 1502
Zsp2I ATGCAT 1 cut(s) 1342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.