Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006230

Physical Location & Seq

Genomic Coordinates Forward (+)

23167468 .. 23167917

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0250100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCAAAGTCAAATGGAATCATTCTCAACACGTTTGATCTGCTGGAAAAGACGGCCCTCAAAGCGTTGAGGGTTGGACTGTGCTTGCCTAACCAACCCACACCTCCGATCTTCACTGTCGGACCGTTGATCTTAGGGAAGAGTGCAGATAATGATGAGCATGAGAGCTTGAAGTGGCTAAACAACCAGCCCAAAGACAGCGTTGTGTTTCTATGTTTCGGAAGCATGGGAGTGTTTTCTATCAAACAGTTGGAGGCCATGGCTTTAGGTTTAGAGAAAAGTGGCCAGAGGTTTTTGTGGGTGGTATGTAATCCACCTATAGAAGAGTTACCGGTAGAGGAGCCAAGTTTGGAGGAAATATTGCCAAAGGGTTTTGTGGAAAGAACAAAGGATAGGGGGCTGGTGGTGAGGAAGTGGGCACCTCAGGTGGAGGTACTGAGTCATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.52

Weight (kDa)

5.72

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27510 AT4G27510
fragaria_vesca	FvH4_5g32290
malus_domestica	MD15G1410500.v1.1
prunus_persica	Prupe.1G552000_v2.0.a1 Prupe.1G552000_v2.0.a1 Prupe.1G552000_v2.0.a1 Prupe.1G552000_v2.0.a1 Prupe.1G552000_v2.0.a1 Prupe.1G552000_v2.0.a1 Prupe.1G552000_v2.0.a1
pyrus_communis	pycom15g36540
rosa_chinensis	RchiOBHm_Chr5g0040361 RchiOBHm_Chr7g0228481
rosa_laevigata	RLG00000001560
rosa_multiflora	Rmu_sc0004041.1_g000006
rosa_roxburghii	Rroxscaffold_3G00231110
rosa_rugosa	Rorug07G0249900 Rorug07G0250000 Rorug07G0250100 Rorug07G0250200.1
rosa_samantha	Rh7AG346000 Rh7AG402100 Rh7BG383100 Rh7CG421100 Rh7DG398200
rosa_wichuraiana	Rw7G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	418
AcoI	YGGCCR	1 cut(s)	283
AfaI	GTAC	1 cut(s)	435
AflIII	ACRYGT	1 cut(s)	30
AgeI	ACCGGT	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
AoxI	GGCC	3 cut(s)	54, 255, 283
AsiGI	ACCGGT	1 cut(s)	331
AspS9I	GGNCC	2 cut(s)	55, 122
AsuHPI	GGTGA	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	122
AxyI	CCTNAGG	1 cut(s)	423
BaeGI	GKGCMC	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	418
BceAI	ACGGC	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	55, 122
BmiI	GGNNCC	2 cut(s)	342, 420
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	331
Bse21I	CCTNAGG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	428, 437
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	165
BshFI	GGCC	3 cut(s)	56, 257, 285
BshNI	GGYRCC	1 cut(s)	418
BshTI	ACCGGT	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	332
BsnI	GGCC	3 cut(s)	56, 257, 285
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	3 cut(s)	37, 108, 129
Bsp19I	CCATGG	1 cut(s)	258
BspANI	GGCC	3 cut(s)	56, 257, 285
BspCNI	CTCAG	2 cut(s)	429, 436
BspLI	GGNNCC	2 cut(s)	342, 420
BspT107I	GGYRCC	1 cut(s)	418
BsrFI	RCCGGY	1 cut(s)	331
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	37, 108, 129
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	4 cut(s)	81, 118, 126, 249
Bst6I	CTCTTC	2 cut(s)	134, 318
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	3 cut(s)	133, 423, 437
BstDSI	CCRYGG	1 cut(s)	258
BstKTI	GATC	3 cut(s)	40, 111, 132
BstMBI	GATC	3 cut(s)	37, 108, 129
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	318
BstSLI	GKGCMC	1 cut(s)	421
Bsu36I	CCTNAGG	1 cut(s)	423
BsuRI	GGCC	3 cut(s)	56, 257, 285
BtgI	CCRYGG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	2 cut(s)	55, 122
CpoI	CGGWCCG	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	434
CspAI	ACCGGT	1 cut(s)	331
CspI	CGGWCCG	1 cut(s)	122
CviAII	CATG	5 cut(s)	161, 226, 259, 443, 447
CviJI	RGCY	9 cut(s)	56, 168, 178, 190, 257, 263, 285, 343, 400
CviKI_1	RGCY	9 cut(s)	56, 168, 178, 190, 257, 263, 285, 343, 400
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	3 cut(s)	133, 423, 437
DpnI	GATC	3 cut(s)	39, 110, 131
DpnII	GATC	3 cut(s)	37, 108, 129
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	2 cut(s)	134, 318
EarI	CTCTTC	2 cut(s)	134, 318
Eco130I	CCWWGG	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	122
Eco81I	CCTNAGG	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	5 cut(s)	164, 229, 262, 446, 450
FaiI	YATR	8 cut(s)	162, 214, 227, 260, 307, 320, 444, 448
FatI	CATG	5 cut(s)	160, 225, 258, 442, 446
HaeIII	GGCC	3 cut(s)	56, 257, 285
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	5 cut(s)	164, 229, 262, 446, 450
HinfI	GANTC	2 cut(s)	18, 439
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	418
Hpy188I	TCNGA	3 cut(s)	108, 122, 221
HpyCH4III	ACNGT	4 cut(s)	81, 118, 126, 249
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	146, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	3 cut(s)	133, 423, 437
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	5 cut(s)	164, 229, 262, 446, 450
Kzo9I	GATC	3 cut(s)	37, 108, 129
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	6 cut(s)	29, 200, 299, 345, 386, 410
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	327
MalI	GATC	3 cut(s)	39, 110, 131
MboI	GATC	3 cut(s)	37, 108, 129
MboII	GAAGA	3 cut(s)	103, 151, 335
MhlI	GDGCHC	1 cut(s)	421
MlsI	TGGCCA	1 cut(s)	285
MluNI	TGGCCA	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	448
MmeI	TCCRAC	3 cut(s)	55, 100, 231
Mox20I	TGGCCA	1 cut(s)	285
Mph1103I	ATGCAT	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	285
MspI	CCGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	62
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	3 cut(s)	37, 108, 129
NlaIII	CATG	5 cut(s)	164, 229, 262, 446, 450
NlaIV	GGNNCC	2 cut(s)	342, 420
NsiI	ATGCAT	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	18
PinAI	ACCGGT	1 cut(s)	331
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
PspN4I	GGNNCC	2 cut(s)	342, 420
PspPI	GGNCC	2 cut(s)	55, 122
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	230
Rsr2I	CGGWCCG	1 cut(s)	122
RsrII	CGGWCCG	1 cut(s)	122
Sau3AI	GATC	3 cut(s)	37, 108, 129
Sau96I	GGNCC	2 cut(s)	55, 122
SchI	GAGTC	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	9 cut(s)	35, 106, 170, 271, 293, 319, 424, 429, 435
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	230
SspI	AATATT	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	4 cut(s)	81, 118, 126, 249
TaiI	ACGT	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	18
TscAI	CASTG	1 cut(s)	121
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.