Rh7AG402100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006230
Physical Location & Seq
Reverse (-)
52970674 .. 52975860
5187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG402100.1

Sequence Viewer

Length: 1998 bp
ATGGGTTCGAAGCGCAAGAGATCCAAGAAGCTCCCAAACCGCGCAGTAGAAGAAACCCCAACTCCGAATCGCCTTCCCCCACTCACCTTCCAAACCCTAATCTCTGCAATTGAAGCACCACAGGGTCTAAAGGTGCCGATTTTGAAACGGATATACGCACTAGTGGTTCCACTGTCTTTACAGGAACCAATTGATTGGTCTAACGCTGAAGGCAGTTGTAATTATTTTGGCATTGAACTGAAATTGGAAGGTCTGCAATGTCTCATCCATTGTTTGTTCAAAGAGCTAGATAAGCGGCTTAAATTCCTATTCTCTGCTTTATCTGATGCCTCTGCAAATAGAGCTCACAAGCACACTGACTCTGACAAAGATATGGCGGTCGATGTTGATGAACTAACCCTGCTTTTAAGATGCTGTGTATCTTTGAGCATGGTGGATCCAAGTTTAGTAATGGAGAATACCCAATTTCTTCTTTCGGTTCTTGGGAAATTGATTGCTTTGGTTACAAGTGGATGCAGTGAGAAAGAGTCTGTCAGCTTTCGGAAGTCTGTTTCTTGTGAATGCACGTATACTGATGCTGGTGGAACCTATGTTTCCAAAGACTTTGTTGCTTCCTTATGTTTCTTAGATCCGTCTAATCTGCGGCACCCAGTTCTCTGTGCATTGCTTGAGATATTTGCAGACGAACTTTTAATGCGGAGACTGTTAAGAAAGTACTTTGTGGCTGTTGATTCTGCTTCTTGCACAAATGAAAGGTTATTTAATAACCTTGTTAAAAGTGATATTGGAAGTGTTCTGGAGGTGATTTCTGTTCACTTTATTTTATCAGTTTATGATGAGCCAGCATCTGAGAACTTTCTCAAAAGACTATACTTGCAATTCAGTAAGAATTTTAGAGGTCCTGAACTGAGCCTGACTGCAGCATTGCCTCTGCTTCTCAACCCTATCATGCTTTCTGCACCAAAAATGTTACAGACTCATTTCATTTTATTAGTTTCTGAAGCAATAGATATAGACACCTCTTTGAAGAATGTTAGACCAGATCTTAGAAATATGGACTGCTACCTAACAGCATTTGAAAGGTCAGTTGTTTTGTACACTAGCCACATGTCTAGTTCACTTATGGATCACCATCCGTTGGGTGTTAGCTGTTCTCATGCCAATTCATGGATGCTAGGGAGTCATCATCCGTCTTTTGAATCTTGTATTCAGCAAGGAACGAGAGAAAAAATTTGTAATCGAGTGACCCATTTAGGTTCCTTGAGGCAGTTAACAAAGTCTGGTATGATGGCTGCTTCTACTGCATACATAAATGAGAACCAACATATTTTCAATGAATCGTGTAAAGATGATATTCTGTCAGTCTTACATAGGATAATACATGGAGCTTCATCTTCAGATGCCAATCATAACGTGTTTTATAGAAAAGGGGATACAAACCCAGAAGACATTTATCTTCTTGCTTCGATATTGAAGTTAATGAGTAGTTCCTTGTTGAAAGTTATTTGGTGCCTGAGAAATGGTGGGAATTCGGGGTATCCGCAAACCTTAAAAGATGCTTCTTCACTCAAGGAATATGATTTTGTGGTGGGTATCATTGGCTGCTTTATTCAATTCAATTTGTCTCTACCTAATCAGAAGTTCTTATCTGACATGATGAAAACCCGCCCGATGATACATAAGACTTCCAAGTGGATCCTTCTGCATTTTTTGGGCTTGCTGTCATTAAGTTTTGCTAGCGGGATTGATTTCTTAGTTAAGGGCTGCATATCAATAATCATGGCAATATTAAACCTATGTGCTTTTGAAGAGGGTGATGTAGTTGCACTGAGGTCATTCTTAGATCCTGGTTCACAATCTGTTTCATCTGAATTGCCTGCTGATAAGGTTACACAGGCTGTGAAGAAACAGAAATCCATCAGAAAAGTTGCATCGAAGTTTCAGGAGACTCAAAATGTTTACTTGAGGTATCAATATTACTGTTACCATGTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

665

Amino Acids

74.47

Weight (kDa)

8.12

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7812 PF25104 134 - 610 1.2e-197 Domain of unknown function (DUF7812)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 133, 645, 1509
AccB7I CCANNNNNTGG 2 cut(s) 1138, 1167
AccI GTMKAC 1 cut(s) 569
AccII CGCG 1 cut(s) 42
AciI CCGC 8 cut(s) 40, 295, 377, 643, 697, 1541, 1666, 1740
AclWI GGATC 8 cut(s) 15, 431, 444, 623, 1134, 1690, 1703, 1838
AcsI RAATTY 4 cut(s) 302, 889, 1230, 1528
AcuI CTGAAG 3 cut(s) 228, 1020, 1380
AfaI GTAC 2 cut(s) 716, 1097
AfiI CCNNNNNNNGG 2 cut(s) 1138, 1167
AflIII ACRYGT 2 cut(s) 1107, 1413
AhlI ACTAGT 1 cut(s) 160
AjnI CCWGG 1 cut(s) 1846
AluBI AGCT 6 cut(s) 31, 286, 344, 537, 1149, 1388
AluI AGCT 6 cut(s) 31, 286, 344, 537, 1149, 1388
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 4 cut(s) 266, 694, 1629, 1940
AlwI GGATC 8 cut(s) 15, 431, 444, 623, 1134, 1690, 1703, 1838
AlwNI CAGNNNCTG 1 cut(s) 848
ApeKI GCWGC 4 cut(s) 920, 1292, 1602, 1764
ApoI RAATTY 4 cut(s) 302, 889, 1230, 1528
AspLEI GCGC 2 cut(s) 15, 44
AspS9I GGNCC 1 cut(s) 899
AsuHPI GGTGA 4 cut(s) 76, 814, 1121, 1826
AsuII TTCGAA 1 cut(s) 8
AsuNHI GCTAGC 1 cut(s) 1736
AvaII GGWCC 1 cut(s) 899
BamHI GGATCC 2 cut(s) 436, 1695
BanI GGYRCC 3 cut(s) 133, 645, 1509
BanII GRGCYC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 1452
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 4 cut(s) 932, 1279, 1589, 1751
BccI CCATC 3 cut(s) 1140, 1282, 1925
BciT130I CCWGG 1 cut(s) 1848
BciVI GTATCC 2 cut(s) 1426, 1548
BcoDI GTCTC 4 cut(s) 266, 694, 1629, 1940
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 6 cut(s) 161, 287, 1101, 1113, 1175, 1737
BfmI CTRYAG 1 cut(s) 918
BfuI GTATCC 2 cut(s) 1426, 1548
BglII AGATCT 1 cut(s) 1042
BisI GCNGC 6 cut(s) 296, 644, 921, 1293, 1603, 1765
BlsI GCNGC 6 cut(s) 297, 645, 922, 1294, 1604, 1766
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 1 cut(s) 1848
Bme18I GGWCC 1 cut(s) 899
BmgT120I GGNCC 1 cut(s) 899
BmiI GGNNCC 9 cut(s) 135, 168, 186, 438, 586, 647, 1258, 1511, 1697
BmrFI CCNGG 1 cut(s) 1848
BmrI ACTGGG 1 cut(s) 644
BmsI GCATC 9 cut(s) 316, 401, 503, 565, 854, 1161, 1390, 1546, 1940
BmtI GCTAGC 1 cut(s) 1740
BmuI ACTGGG 1 cut(s) 644
BpiI GAAGAC 1 cut(s) 1452
BpmI CTGGAG 1 cut(s) 818
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 4 cut(s) 689, 1282, 1553, 1984
BsaAI YACGTR 1 cut(s) 567
BsaBI GATNNNNATC 2 cut(s) 1131, 1404
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 2 cut(s) 1138, 1167
Bse1I ACTGG 1 cut(s) 650
Bse3DI GCAATG 3 cut(s) 263, 662, 923
Bse8I GATNNNNATC 2 cut(s) 1131, 1404
BseBI CCWGG 1 cut(s) 1848
BseGI GGATG 5 cut(s) 264, 518, 1132, 1176, 1186
BseJI GATNNNNATC 2 cut(s) 1131, 1404
BseLI CCNNNNNNNGG 2 cut(s) 1138, 1167
BseMI GCAATG 3 cut(s) 263, 662, 923
BseMII CTCAG 4 cut(s) 840, 899, 1505, 1820
BseNI ACTGG 1 cut(s) 650
BseXI GCAGC 4 cut(s) 932, 1279, 1589, 1751
BsgI GTGCAG 1 cut(s) 942
Bsh1236I CGCG 1 cut(s) 42
Bsh1285I CGRYCG 1 cut(s) 381
BshNI GGYRCC 3 cut(s) 133, 645, 1509
BsiEI CGRYCG 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 346
BslI CCNNNNNNNGG 2 cut(s) 1138, 1167
BsmAI GTCTC 4 cut(s) 266, 694, 1629, 1940
BsmI GAATGC 1 cut(s) 566
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 346
Bsp1407I TGTACA 1 cut(s) 1095
Bsp143I GATC 7 cut(s) 20, 436, 628, 1042, 1126, 1695, 1843
BspACI CCGC 8 cut(s) 40, 295, 377, 643, 697, 1541, 1666, 1740
BspCNI CTCAG 4 cut(s) 841, 900, 1506, 1821
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 9 cut(s) 135, 168, 186, 438, 586, 647, 1258, 1511, 1697
BspMAI CTGCAG 1 cut(s) 922
BspOI GCTAGC 1 cut(s) 1740
BspPI GGATC 8 cut(s) 15, 431, 444, 623, 1134, 1690, 1703, 1838
BspT104I TTCGAA 1 cut(s) 8
BspT107I GGYRCC 3 cut(s) 133, 645, 1509
BsrDI GCAATG 3 cut(s) 263, 662, 923
BsrGI TGTACA 1 cut(s) 1095
BsrI ACTGG 1 cut(s) 650
BssMI GATC 7 cut(s) 20, 436, 628, 1042, 1126, 1695, 1843
BssNAI GTATAC 1 cut(s) 570
Bst1107I GTATAC 1 cut(s) 570
Bst2UI CCWGG 1 cut(s) 1848
Bst4CI ACNGT 3 cut(s) 174, 705, 1982
Bst6I CTCTTC 1 cut(s) 1803
BstAUI TGTACA 1 cut(s) 1095
BstBAI YACGTR 1 cut(s) 567
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 4 cut(s) 843, 1718, 1738, 1878
BstDEI CTNAG 8 cut(s) 625, 849, 908, 1046, 1514, 1753, 1829, 1840
BstF5I GGATG 5 cut(s) 264, 518, 1132, 1176, 1186
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 2 cut(s) 15, 44
BstKTI GATC 7 cut(s) 23, 439, 631, 1045, 1129, 1698, 1846
BstMAI GTCTC 4 cut(s) 266, 694, 1629, 1940
BstMBI GATC 7 cut(s) 20, 436, 628, 1042, 1126, 1695, 1843
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 4 cut(s) 113, 292, 341, 1301
BstNI CCWGG 1 cut(s) 1848
BstNSI RCATGY 1 cut(s) 1111
BstSCI CCNGG 1 cut(s) 1846
BstSFI CTRYAG 1 cut(s) 918
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 4 cut(s) 932, 1279, 1589, 1751
BstV2I GAAGAC 1 cut(s) 1452
BstX2I RGATCY 6 cut(s) 20, 436, 628, 1042, 1695, 1843
BstXI CCANNNNNNTGG 1 cut(s) 195
BstYI RGATCY 6 cut(s) 20, 436, 628, 1042, 1695, 1843
BstZ17I GTATAC 1 cut(s) 570
BsuI GTATCC 2 cut(s) 1426, 1548
BtsCI GGATG 5 cut(s) 264, 518, 1132, 1176, 1186
BtsI GCAGTG 1 cut(s) 523
BtsIMutI CAGTG 4 cut(s) 170, 354, 523, 1826
Cac8I GCNNGC 4 cut(s) 843, 1718, 1738, 1878
CaiI CAGNNNCTG 1 cut(s) 848
CfoI GCGC 2 cut(s) 15, 44
Cfr13I GGNCC 1 cut(s) 899
Csp6I GTAC 2 cut(s) 715, 1096
CviAII CATG 9 cut(s) 430, 949, 1108, 1157, 1167, 1382, 1654, 1780, 1988
CviQI GTAC 2 cut(s) 715, 1096
DdeI CTNAG 8 cut(s) 625, 849, 908, 1046, 1514, 1753, 1829, 1840
DpnI GATC 7 cut(s) 22, 438, 630, 1044, 1128, 1697, 1845
DpnII GATC 7 cut(s) 20, 436, 628, 1042, 1126, 1695, 1843
Eam1104I CTCTTC 1 cut(s) 1803
EarI CTCTTC 1 cut(s) 1803
Ecl136II GAGCTC 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 899
Eco53kI GAGCTC 1 cut(s) 344
Eco57I CTGAAG 3 cut(s) 228, 1020, 1380
EcoICRI GAGCTC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 899
EcoRI GAATTC 1 cut(s) 1528
EcoRII CCWGG 1 cut(s) 1846
EcoT38I GRGCYC 1 cut(s) 346
FaeI CATG 9 cut(s) 433, 952, 1111, 1160, 1170, 1385, 1657, 1783, 1991
FatI CATG 9 cut(s) 429, 948, 1107, 1156, 1166, 1381, 1653, 1779, 1987
FauI CCCGC 2 cut(s) 1673, 1733
FblI GTMKAC 1 cut(s) 569
Fnu4HI GCNGC 6 cut(s) 296, 644, 921, 1293, 1603, 1765
FokI GGATG 5 cut(s) 251, 525, 1119, 1173, 1183
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 6 cut(s) 296, 644, 921, 1293, 1603, 1765
FspBI CTAG 6 cut(s) 161, 287, 1101, 1113, 1175, 1737
GlaI GCGC 2 cut(s) 14, 43
GluI GCNGC 6 cut(s) 296, 644, 921, 1293, 1603, 1765
GsuI CTGGAG 1 cut(s) 818
HhaI GCGC 2 cut(s) 15, 44
Hin1II CATG 9 cut(s) 433, 952, 1111, 1160, 1170, 1385, 1657, 1783, 1991
Hin6I GCGC 2 cut(s) 13, 42
HinP1I GCGC 2 cut(s) 13, 42
HincII GTYRAC 1 cut(s) 1272
HindII GTYRAC 1 cut(s) 1272
HinfI GANTC 9 cut(s) 67, 359, 527, 731, 976, 1180, 1199, 1337, 1948
HpaI GTTAAC 1 cut(s) 1272
HphI GGTGA 4 cut(s) 76, 814, 1121, 1826
Hpy166II GTNNAC 7 cut(s) 570, 814, 1098, 1118, 1272, 1853, 1960
Hpy188III TCNNGA 3 cut(s) 797, 902, 1943
Hpy8I GTNNAC 7 cut(s) 570, 814, 1098, 1118, 1272, 1853, 1960
HpyAV CCTTC 5 cut(s) 83, 97, 203, 242, 1709
HpyCH4III ACNGT 3 cut(s) 174, 705, 1982
HpyCH4IV ACGT 2 cut(s) 566, 1413
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 292, 341, 1301
HpyF3I CTNAG 8 cut(s) 625, 849, 908, 1046, 1514, 1753, 1829, 1840
HpySE526I ACGT 2 cut(s) 566, 1413
Hsp92II CATG 9 cut(s) 433, 952, 1111, 1160, 1170, 1385, 1657, 1783, 1991
HspAI GCGC 2 cut(s) 13, 42
KspAI GTTAAC 1 cut(s) 1272
Kzo9I GATC 7 cut(s) 20, 436, 628, 1042, 1126, 1695, 1843
LmnI GCTCC 2 cut(s) 36, 1385
Lsp1109I GCAGC 4 cut(s) 932, 1279, 1589, 1751
LweI GCATC 9 cut(s) 316, 401, 503, 565, 854, 1161, 1390, 1546, 1940
MaeI CTAG 6 cut(s) 161, 287, 1101, 1113, 1175, 1737
MaeII ACGT 2 cut(s) 566, 1413
MaeIII GTNAC 5 cut(s) 502, 969, 1243, 1888, 1982
MalI GATC 7 cut(s) 22, 438, 630, 1044, 1128, 1697, 1845
MboI GATC 7 cut(s) 20, 436, 628, 1042, 1126, 1695, 1843
MboII GAAGA 9 cut(s) 62, 461, 1039, 1386, 1448, 1457, 1554, 1820, 1915
MfeI CAATTG 2 cut(s) 108, 189
MflI RGATCY 6 cut(s) 20, 436, 628, 1042, 1695, 1843
MhlI GDGCHC 1 cut(s) 346
MlyI GAGTC 5 cut(s) 353, 536, 970, 1189, 1942
MnlI CCTC 9 cut(s) 340, 793, 890, 939, 1030, 1257, 1804, 1824, 1959
MspR9I CCNGG 1 cut(s) 1848
MunI CAATTG 2 cut(s) 108, 189
Mva1269I GAATGC 1 cut(s) 566
MvaI CCWGG 1 cut(s) 1848
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 4 cut(s) 113, 292, 341, 1301
NdeII GATC 7 cut(s) 20, 436, 628, 1042, 1126, 1695, 1843
NheI GCTAGC 1 cut(s) 1736
NlaIII CATG 9 cut(s) 433, 952, 1111, 1160, 1170, 1385, 1657, 1783, 1991
NlaIV GGNNCC 9 cut(s) 135, 168, 186, 438, 586, 647, 1258, 1511, 1697
NmuCI GTSAC 1 cut(s) 1243
NspI RCATGY 1 cut(s) 1111
NspV TTCGAA 1 cut(s) 8
PciI ACATGT 1 cut(s) 1107
PctI GAATGC 1 cut(s) 566
PfeI GAWTC 4 cut(s) 67, 731, 1199, 1337
PflMI CCANNNNNTGG 2 cut(s) 1138, 1167
PkrI GCNGC 6 cut(s) 297, 645, 922, 1294, 1604, 1766
PleI GAGTC 5 cut(s) 353, 535, 970, 1188, 1942
PpsI GAGTC 5 cut(s) 353, 535, 970, 1188, 1942
Ppu21I YACGTR 1 cut(s) 567
PpuMI RGGWCCY 1 cut(s) 899
PscI ACATGT 1 cut(s) 1107
Psp124BI GAGCTC 1 cut(s) 346
Psp5II RGGWCCY 1 cut(s) 899
Psp6I CCWGG 1 cut(s) 1846
PspGI CCWGG 1 cut(s) 1846
PspN4I GGNNCC 9 cut(s) 135, 168, 186, 438, 586, 647, 1258, 1511, 1697
PspPI GGNCC 1 cut(s) 899
PspPPI RGGWCCY 1 cut(s) 899
PstI CTGCAG 1 cut(s) 922
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 6 cut(s) 20, 436, 628, 1042, 1695, 1843
RsaI GTAC 2 cut(s) 716, 1097
RsaNI GTAC 2 cut(s) 715, 1096
SacI GAGCTC 1 cut(s) 346
SatI GCNGC 6 cut(s) 296, 644, 921, 1293, 1603, 1765
Sau3AI GATC 7 cut(s) 20, 436, 628, 1042, 1126, 1695, 1843
Sau96I GGNCC 1 cut(s) 899
ScaI AGTACT 1 cut(s) 716
SchI GAGTC 5 cut(s) 353, 536, 970, 1189, 1942
ScrFI CCNGG 1 cut(s) 1848
SduI GDGCHC 1 cut(s) 346
SfaNI GCATC 9 cut(s) 316, 401, 503, 565, 854, 1161, 1390, 1546, 1940
SfcI CTRYAG 1 cut(s) 918
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 1 cut(s) 899
SmlI CTYRAG 4 cut(s) 668, 1261, 1568, 1963
SmoI CTYRAG 4 cut(s) 668, 1261, 1568, 1963
SpeI ACTAGT 1 cut(s) 160
SsiI CCGC 8 cut(s) 40, 295, 377, 643, 697, 1541, 1666, 1740
SspI AATATT 2 cut(s) 1788, 1976
SspMI CTAG 6 cut(s) 161, 287, 1101, 1113, 1175, 1737
SstI GAGCTC 1 cut(s) 346
StyD4I CCNGG 1 cut(s) 1846
TaaI ACNGT 3 cut(s) 174, 705, 1982
TaiI ACGT 2 cut(s) 569, 1416
TaqI TCGA 5 cut(s) 8, 381, 1240, 1466, 1934
TatI WGTACW 2 cut(s) 714, 1095
TauI GCSGC 2 cut(s) 298, 646
TfiI GAWTC 4 cut(s) 67, 731, 1199, 1337
TscAI CASTG 4 cut(s) 177, 361, 523, 1833
TseFI GTSAC 1 cut(s) 1243
TseI GCWGC 4 cut(s) 920, 1292, 1602, 1764
Tsp45I GTSAC 1 cut(s) 1243
TspDTI ATGAA 8 cut(s) 405, 765, 973, 1155, 1350, 1380, 1673, 1854
TspGWI ACGGA 4 cut(s) 163, 621, 1125, 1179
TspRI CASTG 4 cut(s) 177, 361, 523, 1833
Van91I CCANNNNNTGG 2 cut(s) 1138, 1167
VpaK11BI GGWCC 1 cut(s) 899
XapI RAATTY 4 cut(s) 302, 889, 1230, 1528
XceI RCATGY 1 cut(s) 1111
XmiI GTMKAC 1 cut(s) 569
XspI CTAG 6 cut(s) 161, 287, 1101, 1113, 1175, 1737
ZrmI AGTACT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.