Rw7G033430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006230
Physical Location & Seq
Reverse (-)
49251979 .. 49257043
5065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G033430.1

Sequence Viewer

Length: 1245 bp
ATGGGTTCGAAGCGCAAGAGATCCAAGAAGCTCCCAAACCGCGCAGTAGAAGAAACCCCAACTCCGAATCGCCTTCCCCCACTCACCTTCCGAACCCTAATTTCTGCAATTGAAGCACCACAGGGTCTAAAGGTGCCGGTTTTGAAACGAATATACGCATTAGTGGTTCCATTGTCTTTACAGGAACCAATTGATTGGTCTAACGCTGAAGGCAGTTGTAATTATTTTGGCATTGAACTGAAATTGGAAGATCTGCAATGTCTCATCCTTTGTTTGTTCAAAGAGCTAGATAAGCGGCTTAAATTCCTATTCCCTGCTTTATCTGATGCCTCTGCAATTAGAGCTCACAAGCACACTGACTCTGACAAAGATATGGCGGTCGATGTTGATGAACTAACCCTGCTTTTAAGATGCTGTGTATCTTTGAGCATGGTGGACCCAAGTTTAGTAATGGAGAATACCCAATTTCTTCTTTCGGTTCTTGGGAAATTGATTGCTTTGGTTACAAGTGGATGCAGTGAGAAAGAGTCTGTCAGCTTTCGGAAGTCTGTTTCTTGTGAATGCACGTTTACTGATGCTGGAGGAACCTATGTTTCCAAAGACTTTGTTGCTTCCTTATGTTTCTTAGAGCCTTCTAATCTGCGGCACCCGGTTCTCTGTGCATTGCTTGAGATATTTGCAGACGAACTTTTAATGCGGAGACTGTTAAGAAAGTACTTTGTGGCTGTTGATTCTGCTTCTTGCACAAATGAAAGGTTATTTAATAACCTTGTTAAAAGTGATATTGGAAGTGTTCTGGAGGTGATTTCTGTTCACTTTATTTTATCAGTTTATGATGAGCCAGCATCTGAGAACTTTCTCAAAAGACTATACTTGCAATTCAGTAAGAATTTTAGAGGTCCTGAACTGAGCCTGACTGCAGCCTTGCCTCTGCTTCTCAACCCTATCATGCTTTCTGCGCCAAAAATGTTACAGACTCATTTCATTTTATTAGTTTCTGAAGCAATAGATATAGACACCTCTTTGAAGAATGTTAGACCAGATATTAGAAACATGGACTGCTACCTAACAGCATTTGAAAGGTCAGTTGTTTTGTACACTAGCCACATGTCTAGTTCACTTATGGATCACCATCCGTTGGGTGTTAGCTGTTCTCATGCCAATTCATGGATGCTAGGGAGTCATCATCCGTCTTTTGAATCTTGTATTCAGCAAGGAACGAGAGAAAAAATTTGTAATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

414

Amino Acids

46.4

Weight (kDa)

6.82

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7812 PF25104 134 - 413 4.9e-106 Domain of unknown function (DUF7812)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 133, 645
AccB7I CCANNNNNTGG 2 cut(s) 1138, 1167
AccII CGCG 1 cut(s) 42
AciI CCGC 5 cut(s) 40, 295, 377, 643, 697
AclWI GGATC 2 cut(s) 15, 1134
AcsI RAATTY 3 cut(s) 302, 889, 1230
AcuI CTGAAG 2 cut(s) 228, 1020
AfaI GTAC 2 cut(s) 716, 1097
AfiI CCNNNNNNNGG 2 cut(s) 1138, 1167
AflIII ACRYGT 1 cut(s) 1107
AgsI TTSAA 7 cut(s) 113, 145, 236, 280, 1027, 1079, 1199
AluBI AGCT 5 cut(s) 31, 286, 344, 537, 1149
AluI AGCT 5 cut(s) 31, 286, 344, 537, 1149
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 2 cut(s) 266, 694
AlwI GGATC 2 cut(s) 15, 1134
AlwNI CAGNNNCTG 1 cut(s) 848
ApeKI GCWGC 1 cut(s) 920
ApoI RAATTY 3 cut(s) 302, 889, 1230
AspLEI GCGC 3 cut(s) 15, 44, 961
AspS9I GGNCC 2 cut(s) 436, 899
AsuC2I CCSGG 1 cut(s) 650
AsuHPI GGTGA 3 cut(s) 76, 814, 1121
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 2 cut(s) 436, 899
BanI GGYRCC 2 cut(s) 133, 645
BanII GRGCYC 1 cut(s) 346
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 1 cut(s) 932
BccI CCATC 1 cut(s) 1140
BcnI CCSGG 1 cut(s) 650
BcoDI GTCTC 2 cut(s) 266, 694
BfaI CTAG 4 cut(s) 287, 1101, 1113, 1175
BfmI CTRYAG 1 cut(s) 918
BglII AGATCT 1 cut(s) 250
BisI GCNGC 3 cut(s) 296, 644, 921
BlsI GCNGC 3 cut(s) 297, 645, 922
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 1 cut(s) 650
Bme18I GGWCC 2 cut(s) 436, 899
BmgT120I GGNCC 2 cut(s) 436, 899
BmiI GGNNCC 6 cut(s) 135, 168, 186, 438, 586, 647
BmrFI CCNGG 1 cut(s) 650
BmsI GCATC 6 cut(s) 316, 401, 503, 565, 854, 1161
BpmI CTGGAG 2 cut(s) 600, 818
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 1 cut(s) 650
BsaBI GATNNNNATC 1 cut(s) 1131
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 2 cut(s) 1138, 1167
Bse118I RCCGGY 1 cut(s) 136
Bse3DI GCAATG 2 cut(s) 263, 662
Bse8I GATNNNNATC 1 cut(s) 1131
BseGI GGATG 5 cut(s) 264, 518, 1132, 1176, 1186
BseJI GATNNNNATC 1 cut(s) 1131
BseLI CCNNNNNNNGG 2 cut(s) 1138, 1167
BseMI GCAATG 2 cut(s) 263, 662
BseMII CTCAG 2 cut(s) 840, 899
BseXI GCAGC 1 cut(s) 932
Bsh1236I CGCG 1 cut(s) 42
Bsh1285I CGRYCG 1 cut(s) 381
BshNI GGYRCC 2 cut(s) 133, 645
BsiEI CGRYCG 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 2 cut(s) 137, 650
BslI CCNNNNNNNGG 2 cut(s) 1138, 1167
BsmAI GTCTC 2 cut(s) 266, 694
BsmI GAATGC 1 cut(s) 566
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 346
Bsp1407I TGTACA 1 cut(s) 1095
Bsp143I GATC 3 cut(s) 20, 250, 1126
BspACI CCGC 5 cut(s) 40, 295, 377, 643, 697
BspCNI CTCAG 2 cut(s) 841, 900
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 6 cut(s) 135, 168, 186, 438, 586, 647
BspMAI CTGCAG 1 cut(s) 922
BspPI GGATC 2 cut(s) 15, 1134
BspT104I TTCGAA 1 cut(s) 8
BspT107I GGYRCC 2 cut(s) 133, 645
BsrDI GCAATG 2 cut(s) 263, 662
BsrFI RCCGGY 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 1095
BssAI RCCGGY 1 cut(s) 136
BssMI GATC 3 cut(s) 20, 250, 1126
Bst4CI ACNGT 1 cut(s) 705
BstAUI TGTACA 1 cut(s) 1095
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 843
BstDEI CTNAG 3 cut(s) 625, 849, 908
BstF5I GGATG 5 cut(s) 264, 518, 1132, 1176, 1186
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 3 cut(s) 15, 44, 961
BstKTI GATC 3 cut(s) 23, 253, 1129
BstMAI GTCTC 2 cut(s) 266, 694
BstMBI GATC 3 cut(s) 20, 250, 1126
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 4 cut(s) 113, 292, 341, 958
BstNSI RCATGY 1 cut(s) 1111
BstSCI CCNGG 1 cut(s) 648
BstSFI CTRYAG 1 cut(s) 918
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 932
BstX2I RGATCY 2 cut(s) 20, 250
BstXI CCANNNNNNTGG 1 cut(s) 195
BstYI RGATCY 2 cut(s) 20, 250
BtsCI GGATG 5 cut(s) 264, 518, 1132, 1176, 1186
BtsI GCAGTG 1 cut(s) 523
BtsIMutI CAGTG 2 cut(s) 354, 523
Cac8I GCNNGC 1 cut(s) 843
CaiI CAGNNNCTG 1 cut(s) 848
CfoI GCGC 3 cut(s) 15, 44, 961
Cfr10I RCCGGY 1 cut(s) 136
Cfr13I GGNCC 2 cut(s) 436, 899
Csp6I GTAC 2 cut(s) 715, 1096
CviAII CATG 6 cut(s) 430, 949, 1054, 1108, 1157, 1167
CviQI GTAC 2 cut(s) 715, 1096
DdeI CTNAG 3 cut(s) 625, 849, 908
DpnI GATC 3 cut(s) 22, 252, 1128
DpnII GATC 3 cut(s) 20, 250, 1126
Ecl136II GAGCTC 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 436, 899
Eco53kI GAGCTC 1 cut(s) 344
Eco57I CTGAAG 2 cut(s) 228, 1020
EcoICRI GAGCTC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 899
EcoT38I GRGCYC 1 cut(s) 346
FaeI CATG 6 cut(s) 433, 952, 1057, 1111, 1160, 1170
FatI CATG 6 cut(s) 429, 948, 1053, 1107, 1156, 1166
Fnu4HI GCNGC 3 cut(s) 296, 644, 921
FokI GGATG 5 cut(s) 251, 525, 1119, 1173, 1183
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 3 cut(s) 296, 644, 921
FspBI CTAG 4 cut(s) 287, 1101, 1113, 1175
GlaI GCGC 3 cut(s) 14, 43, 960
GluI GCNGC 3 cut(s) 296, 644, 921
GsuI CTGGAG 2 cut(s) 600, 818
HapII CCGG 2 cut(s) 137, 650
HhaI GCGC 3 cut(s) 15, 44, 961
Hin1II CATG 6 cut(s) 433, 952, 1057, 1111, 1160, 1170
Hin6I GCGC 3 cut(s) 13, 42, 959
HinP1I GCGC 3 cut(s) 13, 42, 959
HinfI GANTC 7 cut(s) 67, 359, 527, 731, 976, 1180, 1199
HpaII CCGG 2 cut(s) 137, 650
HphI GGTGA 3 cut(s) 76, 814, 1121
Hpy166II GTNNAC 5 cut(s) 436, 570, 814, 1098, 1118
Hpy188I TCNGA 7 cut(s) 66, 92, 325, 364, 543, 850, 1000
Hpy188III TCNNGA 2 cut(s) 797, 902
Hpy8I GTNNAC 5 cut(s) 436, 570, 814, 1098, 1118
HpyAV CCTTC 4 cut(s) 83, 97, 203, 642
HpyCH4III ACNGT 1 cut(s) 705
HpyCH4IV ACGT 1 cut(s) 566
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 292, 341, 958
HpyF3I CTNAG 3 cut(s) 625, 849, 908
HpySE526I ACGT 1 cut(s) 566
Hsp92II CATG 6 cut(s) 433, 952, 1057, 1111, 1160, 1170
HspAI GCGC 3 cut(s) 13, 42, 959
Kzo9I GATC 3 cut(s) 20, 250, 1126
LmnI GCTCC 1 cut(s) 36
Lsp1109I GCAGC 1 cut(s) 932
LweI GCATC 6 cut(s) 316, 401, 503, 565, 854, 1161
MaeI CTAG 4 cut(s) 287, 1101, 1113, 1175
MaeII ACGT 1 cut(s) 566
MaeIII GTNAC 2 cut(s) 502, 969
MalI GATC 3 cut(s) 22, 252, 1128
MboI GATC 3 cut(s) 20, 250, 1126
MboII GAAGA 4 cut(s) 62, 260, 461, 1039
MfeI CAATTG 2 cut(s) 108, 189
MflI RGATCY 2 cut(s) 20, 250
MhlI GDGCHC 1 cut(s) 346
MlyI GAGTC 4 cut(s) 353, 536, 970, 1189
MnlI CCTC 6 cut(s) 340, 575, 793, 890, 939, 1030
MseI TTAA 6 cut(s) 300, 407, 692, 707, 762, 774
MspI CCGG 2 cut(s) 137, 650
MspR9I CCNGG 1 cut(s) 650
MunI CAATTG 2 cut(s) 108, 189
Mva1269I GAATGC 1 cut(s) 566
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 4 cut(s) 113, 292, 341, 958
NciI CCSGG 1 cut(s) 650
NdeII GATC 3 cut(s) 20, 250, 1126
NlaIII CATG 6 cut(s) 433, 952, 1057, 1111, 1160, 1170
NlaIV GGNNCC 6 cut(s) 135, 168, 186, 438, 586, 647
NspI RCATGY 1 cut(s) 1111
NspV TTCGAA 1 cut(s) 8
PciI ACATGT 1 cut(s) 1107
PctI GAATGC 1 cut(s) 566
PfeI GAWTC 3 cut(s) 67, 731, 1199
PflMI CCANNNNNTGG 2 cut(s) 1138, 1167
PkrI GCNGC 3 cut(s) 297, 645, 922
PleI GAGTC 4 cut(s) 353, 535, 970, 1188
PpsI GAGTC 4 cut(s) 353, 535, 970, 1188
PpuMI RGGWCCY 1 cut(s) 899
PscI ACATGT 1 cut(s) 1107
Psp124BI GAGCTC 1 cut(s) 346
Psp5II RGGWCCY 1 cut(s) 899
PspN4I GGNNCC 6 cut(s) 135, 168, 186, 438, 586, 647
PspPI GGNCC 2 cut(s) 436, 899
PspPPI RGGWCCY 1 cut(s) 899
PstI CTGCAG 1 cut(s) 922
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 2 cut(s) 20, 250
RsaI GTAC 2 cut(s) 716, 1097
RsaNI GTAC 2 cut(s) 715, 1096
SacI GAGCTC 1 cut(s) 346
SaqAI TTAA 6 cut(s) 300, 407, 692, 707, 762, 774
SatI GCNGC 3 cut(s) 296, 644, 921
Sau3AI GATC 3 cut(s) 20, 250, 1126
Sau96I GGNCC 2 cut(s) 436, 899
ScaI AGTACT 1 cut(s) 716
SchI GAGTC 4 cut(s) 353, 536, 970, 1189
ScrFI CCNGG 1 cut(s) 650
SduI GDGCHC 1 cut(s) 346
SfaNI GCATC 6 cut(s) 316, 401, 503, 565, 854, 1161
SfcI CTRYAG 1 cut(s) 918
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 2 cut(s) 436, 899
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
SsiI CCGC 5 cut(s) 40, 295, 377, 643, 697
SspMI CTAG 4 cut(s) 287, 1101, 1113, 1175
SstI GAGCTC 1 cut(s) 346
StyD4I CCNGG 1 cut(s) 648
TaaI ACNGT 1 cut(s) 705
TaiI ACGT 1 cut(s) 569
TaqI TCGA 2 cut(s) 8, 381
TatI WGTACW 2 cut(s) 714, 1095
TauI GCSGC 2 cut(s) 298, 646
TfiI GAWTC 3 cut(s) 67, 731, 1199
Tru1I TTAA 6 cut(s) 300, 407, 692, 707, 762, 774
Tru9I TTAA 6 cut(s) 300, 407, 692, 707, 762, 774
TscAI CASTG 2 cut(s) 361, 523
TseI GCWGC 1 cut(s) 920
TspDTI ATGAA 4 cut(s) 405, 765, 973, 1155
TspGWI ACGGA 2 cut(s) 1125, 1179
TspRI CASTG 2 cut(s) 361, 523
Van91I CCANNNNNTGG 2 cut(s) 1138, 1167
VpaK11BI GGWCC 2 cut(s) 436, 899
XapI RAATTY 3 cut(s) 302, 889, 1230
XceI RCATGY 1 cut(s) 1111
XspI CTAG 4 cut(s) 287, 1101, 1113, 1175
ZrmI AGTACT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.