Rroxscaffold_3G00231110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006230
Physical Location & Seq
Forward (+)
16047380 .. 16052440
5061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231110.1

Sequence Viewer

Length: 2319 bp
ATGGGTTCGAAGCGCAAGAGATCCAAGAAGCTCCCAAACCGCGCAGTAGAAGAAACCCCAACTCCGAATCGCCTTCCCCCACTCACCTTCCAAACCCTAATTTCTGCAATTGAAGCACCACAGGGTCTAAAGGTGCCGATTTTGAAACGGATATACGCACTAGTGGTTCCACTGTCTTTACAGGAACCAATTGATTGGTCTAACGCTGAAGGCAGTTGTAATTATTTTGGCATTGAACTGAAATTGGAAGGTCTGCAATGTCTCATCCATTGTTTGTTCAAAGAGCTAGATAAGCGGCTTAAATTCCTATTCTCTGCTTTATCTGATGACTCTGCAAATAGAGCTCACAAGCACACTGACTCTGACAAAGATATGGCGGTCGATGTTGATGAACTAACCCTGCTTTTAAGATGCTGTGTATCTTTGAGCATGGTGGACCCAAGTTTAGTAATGGAGAATACCCAATTTCTTCTTTCGGTTCTTGGGAAATTGATTGCTTTGGTTACAAGTGGATGCAGTGAGAAAGAGTCTGTCAGCTTTCGGAAGTCTGTTTCTTGTGAATGCACGTATACTGATGCTGGTGGAACCTATGTTTCCAAAGACTTTGTTGCTTCCTTATGTTTCTTAGAGCCTTCTAATCTGCAGCACCCAGTTCTCTGTGCATTGCTTGAGATATTTGCAGACGAACTTTTAATGCGGAGACTGTTAAGAAAGTACTTTGTGGCTGTTGATTCTGCTTCTTGCACAAATGAAAGGTTATTTAATAACCTTGTTAAAAGTGATATTGGAAGTGTTCTGGAGGTGATTTCTGTTCACTTTATTTTATCAGTTTATGATGAGCCAGCATCTGAGAACTTTCTCAAAAGATTATACTTGCAATTCAGTAAGAATTTTAGAGGTCCTGAACTGAGCCTGACTGCAGCATTGCCTCTGCTTCTCAACCCTATCATGCTTTCTGCGCCAAAAATGTTACAGACTCATTTCATTTTATTAGTTTCTGAAGCAATAGATATAGACACCTCTTTGAAGAATGTTAGACCAGATCTTAGAAATATGGACTGCTACCTAACAGCATTCGAAAGGTCAGTTGTTTTGTACACTAGCCACATGTCTAGTTCACTTATGGATCACCATCCGTTGGGTGTTAGCTGTTCTCATGCCAATTCATGGATGCTAGGGAGTCATCATCCTTCTTTTGAATCTTGTATTCAGCAAGGAACAAGAGAAAAAATTTGTAATCGAGTGACCCATTTAGGTTCCTTGAGGCAGTTAACAAAGCCTGGTATGATGGCTGCTTCTACCGCATACATAAATGAGAACCAACATATTTTCAATGAATCGTGTAAAGATGATATTCTGTCAGTCTTACATAGCATAATACATGGAGCTTCATCTTCAGATGCCAATCATAACGTGTTTTATAGAAAAGGGAATACAAACCCAGAAGACATTTATCTTCTTGCTTCGATATTGAAGTTAATGAGTAGTTCCTTGTTGAAAGTTATTTGGTGCCTGAGAAATGGTGGGAATTCGGGGTATCCGCAAACCTTAAAAGATGCTTCTTCACTTAAGGAATATGATTTTGTGGTGGGTATCATTGGCTGCTTTATTCAATTCAATTTGTCTCTACCTAATCAGAAGTTCTTATCTGACATGATGAAAACCCGCCCGATGATACATAAGACTTCCAAGTGGATCCTTCTGCATTTTTTGGGCTTGCTGTCATTAAGTTTTGCTAGCGGGATTGATTTCTTAGTTAAGGGCTGCATATCAATAATCATGGCAATATTAAACCTATGTGCTTTTGAAGAGGGTGATATAGTTGCACTGAGGTCATTCTTAGATGCTGGTTCACAATCTGTTTCATCTGAATTGCCTGCTGATAAGGTTACACAGGCTGTGAAGAAACAGAAATCCATCAGAAAAGTTGCATCGAAGTTTCAGAAGACTCAAAATGTTTACTTGAGCAAACATTCTGTCACACACCACCATAAGAAAGCACAGAGTGACGTAGCAAAAACTTCCGAAAATGCATGCTTCATGAGCTGCACAAGAGAGTTTAGTGATATCATGGAGGAGGGAACAGAAGAAACCTGCACTGGGGAGATGTACCTCAATTGCACACTAGCAGGCTCCAAGAAGTCTGACCTTGATGATTTGGCAGACTTCATTGTCTGCAAACCAGGGAAGGAGTACTCTAGCTGGTTGAAAGATCGAGAAAAGTATCGATCTTGGAAAGTAAAAAAAGAGGCAGTTGTAAGGTGGGAGAAAAAGAAAAGGACTTATCGGAAAGTTAGAAGTAAAAGATCGTACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

772

Amino Acids

86.72

Weight (kDa)

8.65

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7812 PF25104 134 - 610 2.4e-197 Domain of unknown function (DUF7812)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2171
Acc36I ACCTGC 1 cut(s) 2102
AccB1I GGYRCC 2 cut(s) 133, 1509
AccB7I CCANNNNNTGG 2 cut(s) 1138, 1167
AccI GTMKAC 1 cut(s) 569
AccII CGCG 1 cut(s) 42
AciI CCGC 8 cut(s) 40, 295, 377, 697, 1302, 1541, 1666, 1740
AclWI GGATC 4 cut(s) 15, 1134, 1690, 1703
AcsI RAATTY 4 cut(s) 302, 889, 1230, 1528
AcuI CTGAAG 3 cut(s) 228, 1020, 1380
AdeI CACNNNGTG 1 cut(s) 2006
AfaI GTAC 5 cut(s) 716, 1097, 2111, 2195, 2312
AfiI CCNNNNNNNGG 3 cut(s) 1138, 1167, 2100
AflII CTTAAG 1 cut(s) 1568
AflIII ACRYGT 2 cut(s) 1107, 1413
AhlI ACTAGT 1 cut(s) 160
AjnI CCWGG 2 cut(s) 1279, 2182
AluBI AGCT 8 cut(s) 31, 286, 344, 537, 1149, 1388, 2046, 2202
AluI AGCT 8 cut(s) 31, 286, 344, 537, 1149, 1388, 2046, 2202
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 3 cut(s) 266, 694, 1629
AlwI GGATC 4 cut(s) 15, 1134, 1690, 1703
AlwNI CAGNNNCTG 1 cut(s) 848
ApeKI GCWGC 6 cut(s) 643, 920, 1292, 1602, 1764, 2046
ApoI RAATTY 4 cut(s) 302, 889, 1230, 1528
ArsI GACNNNNNNTTYG 2 cut(s) 1962, 1994
AspLEI GCGC 3 cut(s) 15, 44, 961
AspS9I GGNCC 2 cut(s) 436, 899
AsuHPI GGTGA 4 cut(s) 76, 814, 1121, 1826
AsuII TTCGAA 2 cut(s) 8, 1077
AsuNHI GCTAGC 1 cut(s) 1736
AvaII GGWCC 2 cut(s) 436, 899
BamHI GGATCC 1 cut(s) 1695
BanI GGYRCC 2 cut(s) 133, 1509
BanII GRGCYC 1 cut(s) 346
BbsI GAAGAC 2 cut(s) 1452, 1952
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 6 cut(s) 655, 932, 1279, 1589, 1751, 2033
BccI CCATC 3 cut(s) 1140, 1282, 1925
BciT130I CCWGG 2 cut(s) 1281, 2184
BciVI GTATCC 1 cut(s) 1548
BcoDI GTCTC 3 cut(s) 266, 694, 1629
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 8 cut(s) 161, 287, 1101, 1113, 1175, 1737, 2126, 2199
BfmI CTRYAG 2 cut(s) 641, 918
BfrI CTTAAG 1 cut(s) 1568
BfuAI ACCTGC 1 cut(s) 2102
BfuI GTATCC 1 cut(s) 1548
BglII AGATCT 1 cut(s) 1042
BisI GCNGC 7 cut(s) 296, 644, 921, 1293, 1603, 1765, 2047
BlsI GCNGC 7 cut(s) 297, 645, 922, 1294, 1604, 1766, 2048
BmcAI AGTACT 2 cut(s) 716, 2195
Bme1390I CCNGG 2 cut(s) 1281, 2184
Bme18I GGWCC 2 cut(s) 436, 899
BmgT120I GGNCC 2 cut(s) 436, 899
BmiI GGNNCC 9 cut(s) 135, 168, 186, 438, 586, 1258, 1511, 1697, 2134
BmrFI CCNGG 2 cut(s) 1281, 2184
BmrI ACTGGG 2 cut(s) 644, 2109
BmsI GCATC 9 cut(s) 401, 503, 565, 854, 1161, 1390, 1546, 1834, 1940
BmtI GCTAGC 1 cut(s) 1740
BmuI ACTGGG 2 cut(s) 644, 2109
BpiI GAAGAC 2 cut(s) 1452, 1952
BpmI CTGGAG 1 cut(s) 818
Bpu14I TTCGAA 2 cut(s) 8, 1077
BpuEI CTTGAG 3 cut(s) 689, 1282, 1984
Bsa29I ATCGAT 1 cut(s) 2227
BsaAI YACGTR 1 cut(s) 567
BsaBI GATNNNNATC 2 cut(s) 1131, 1404
BsaJI CCNNGG 1 cut(s) 2183
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 1138, 1167, 2100
Bse1I ACTGG 2 cut(s) 650, 2104
Bse3DI GCAATG 3 cut(s) 263, 662, 923
Bse8I GATNNNNATC 2 cut(s) 1131, 1404
BseBI CCWGG 2 cut(s) 1281, 2184
BseCI ATCGAT 1 cut(s) 2227
BseDI CCNNGG 1 cut(s) 2183
BseGI GGATG 5 cut(s) 264, 518, 1132, 1176, 1186
BseJI GATNNNNATC 2 cut(s) 1131, 1404
BseLI CCNNNNNNNGG 3 cut(s) 1138, 1167, 2100
BseMI GCAATG 3 cut(s) 263, 662, 923
BseMII CTCAG 4 cut(s) 840, 899, 1505, 1820
BseNI ACTGG 2 cut(s) 650, 2104
BseRI GAGGAG 1 cut(s) 2090
BseXI GCAGC 6 cut(s) 655, 932, 1279, 1589, 1751, 2033
BsgI GTGCAG 2 cut(s) 2032, 2080
Bsh1236I CGCG 1 cut(s) 42
Bsh1285I CGRYCG 1 cut(s) 381
BshNI GGYRCC 2 cut(s) 133, 1509
BshVI ATCGAT 1 cut(s) 2227
BsiEI CGRYCG 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 346
BslI CCNNNNNNNGG 3 cut(s) 1138, 1167, 2100
BsmAI GTCTC 3 cut(s) 266, 694, 1629
BsmI GAATGC 2 cut(s) 566, 1073
Bsp119I TTCGAA 2 cut(s) 8, 1077
Bsp1286I GDGCHC 1 cut(s) 346
Bsp1407I TGTACA 1 cut(s) 1095
Bsp143I GATC 7 cut(s) 20, 1042, 1126, 1695, 2212, 2228, 2306
BspACI CCGC 8 cut(s) 40, 295, 377, 697, 1302, 1541, 1666, 1740
BspCNI CTCAG 4 cut(s) 841, 900, 1506, 1821
BspDI ATCGAT 1 cut(s) 2227
BspFNI CGCG 1 cut(s) 42
BspHI TCATGA 1 cut(s) 2040
BspLI GGNNCC 9 cut(s) 135, 168, 186, 438, 586, 1258, 1511, 1697, 2134
BspMAI CTGCAG 2 cut(s) 645, 922
BspMI ACCTGC 1 cut(s) 2102
BspOI GCTAGC 1 cut(s) 1740
BspPI GGATC 4 cut(s) 15, 1134, 1690, 1703
BspT104I TTCGAA 2 cut(s) 8, 1077
BspT107I GGYRCC 2 cut(s) 133, 1509
BspTI CTTAAG 1 cut(s) 1568
BsrDI GCAATG 3 cut(s) 263, 662, 923
BsrGI TGTACA 1 cut(s) 1095
BsrI ACTGG 2 cut(s) 650, 2104
BssECI CCNNGG 1 cut(s) 2183
BssMI GATC 7 cut(s) 20, 1042, 1126, 1695, 2212, 2228, 2306
BssNAI GTATAC 1 cut(s) 570
Bst1107I GTATAC 1 cut(s) 570
Bst2UI CCWGG 2 cut(s) 1281, 2184
Bst4CI ACNGT 2 cut(s) 174, 705
Bst6I CTCTTC 1 cut(s) 1803
BstAFI CTTAAG 1 cut(s) 1568
BstAUI TGTACA 1 cut(s) 1095
BstBAI YACGTR 1 cut(s) 567
BstBI TTCGAA 2 cut(s) 8, 1077
BstC8I GCNNGC 6 cut(s) 843, 1718, 1738, 1878, 2035, 2131
BstDEI CTNAG 8 cut(s) 625, 849, 908, 1046, 1514, 1753, 1829, 1840
BstF5I GGATG 5 cut(s) 264, 518, 1132, 1176, 1186
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 3 cut(s) 15, 44, 961
BstKTI GATC 7 cut(s) 23, 1045, 1129, 1698, 2215, 2231, 2309
BstMAI GTCTC 3 cut(s) 266, 694, 1629
BstMBI GATC 7 cut(s) 20, 1042, 1126, 1695, 2212, 2228, 2306
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 6 cut(s) 113, 292, 341, 958, 1301, 2043
BstNI CCWGG 2 cut(s) 1281, 2184
BstNSI RCATGY 2 cut(s) 1111, 2037
BstSCI CCNGG 2 cut(s) 1279, 2182
BstSFI CTRYAG 2 cut(s) 641, 918
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 6 cut(s) 655, 932, 1279, 1589, 1751, 2033
BstV2I GAAGAC 2 cut(s) 1452, 1952
BstX2I RGATCY 3 cut(s) 20, 1042, 1695
BstXI CCANNNNNNTGG 1 cut(s) 195
BstYI RGATCY 3 cut(s) 20, 1042, 1695
BstZ17I GTATAC 1 cut(s) 570
Bsu15I ATCGAT 1 cut(s) 2227
BsuI GTATCC 1 cut(s) 1548
BsuTUI ATCGAT 1 cut(s) 2227
BtsCI GGATG 5 cut(s) 264, 518, 1132, 1176, 1186
BtsI GCAGTG 1 cut(s) 523
BtsIMutI CAGTG 5 cut(s) 170, 354, 523, 1826, 2097
BveI ACCTGC 1 cut(s) 2102
Cac8I GCNNGC 6 cut(s) 843, 1718, 1738, 1878, 2035, 2131
CaiI CAGNNNCTG 1 cut(s) 848
CciI TCATGA 1 cut(s) 2040
CfoI GCGC 3 cut(s) 15, 44, 961
Cfr13I GGNCC 2 cut(s) 436, 899
ClaI ATCGAT 1 cut(s) 2227
Csp6I GTAC 5 cut(s) 715, 1096, 2110, 2194, 2311
CviQI GTAC 5 cut(s) 715, 1096, 2110, 2194, 2311
DdeI CTNAG 8 cut(s) 625, 849, 908, 1046, 1514, 1753, 1829, 1840
DpnI GATC 7 cut(s) 22, 1044, 1128, 1697, 2214, 2230, 2308
DpnII GATC 7 cut(s) 20, 1042, 1126, 1695, 2212, 2228, 2306
DraIII CACNNNGTG 1 cut(s) 2006
DrdI GACNNNNNNGTC 1 cut(s) 2171
DseDI GACNNNNNNGTC 1 cut(s) 2171
Eam1104I CTCTTC 1 cut(s) 1803
EarI CTCTTC 1 cut(s) 1803
Ecl136II GAGCTC 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 346
Eco32I GATATC 1 cut(s) 2068
Eco47I GGWCC 2 cut(s) 436, 899
Eco53kI GAGCTC 1 cut(s) 344
Eco57I CTGAAG 3 cut(s) 228, 1020, 1380
EcoICRI GAGCTC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 899
EcoRI GAATTC 1 cut(s) 1528
EcoRII CCWGG 2 cut(s) 1279, 2182
EcoRV GATATC 1 cut(s) 2068
EcoT22I ATGCAT 1 cut(s) 2035
EcoT38I GRGCYC 1 cut(s) 346
FauI CCCGC 2 cut(s) 1673, 1733
FblI GTMKAC 1 cut(s) 569
Fnu4HI GCNGC 7 cut(s) 296, 644, 921, 1293, 1603, 1765, 2047
FokI GGATG 5 cut(s) 251, 525, 1119, 1173, 1183
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 7 cut(s) 296, 644, 921, 1293, 1603, 1765, 2047
FspBI CTAG 8 cut(s) 161, 287, 1101, 1113, 1175, 1737, 2126, 2199
GlaI GCGC 3 cut(s) 14, 43, 960
GluI GCNGC 7 cut(s) 296, 644, 921, 1293, 1603, 1765, 2047
GsuI CTGGAG 1 cut(s) 818
HhaI GCGC 3 cut(s) 15, 44, 961
Hin6I GCGC 3 cut(s) 13, 42, 959
HinP1I GCGC 3 cut(s) 13, 42, 959
HincII GTYRAC 1 cut(s) 1272
HindII GTYRAC 1 cut(s) 1272
HpaI GTTAAC 1 cut(s) 1272
HphI GGTGA 4 cut(s) 76, 814, 1121, 1826
Hpy166II GTNNAC 8 cut(s) 436, 570, 814, 1098, 1118, 1272, 1853, 1960
Hpy188III TCNNGA 4 cut(s) 797, 902, 2041, 2216
Hpy8I GTNNAC 8 cut(s) 436, 570, 814, 1098, 1118, 1272, 1853, 1960
HpyAV CCTTC 8 cut(s) 83, 97, 203, 242, 642, 1200, 1709, 2182
HpyCH4III ACNGT 2 cut(s) 174, 705
HpyCH4IV ACGT 3 cut(s) 566, 1413, 2010
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 292, 341, 958, 1301, 2043
HpyF3I CTNAG 8 cut(s) 625, 849, 908, 1046, 1514, 1753, 1829, 1840
HpySE526I ACGT 3 cut(s) 566, 1413, 2010
HspAI GCGC 3 cut(s) 13, 42, 959
KspAI GTTAAC 1 cut(s) 1272
Kzo9I GATC 7 cut(s) 20, 1042, 1126, 1695, 2212, 2228, 2306
LmnI GCTCC 3 cut(s) 36, 1385, 2138
Lsp1109I GCAGC 6 cut(s) 655, 932, 1279, 1589, 1751, 2033
LweI GCATC 9 cut(s) 401, 503, 565, 854, 1161, 1390, 1546, 1834, 1940
MaeI CTAG 8 cut(s) 161, 287, 1101, 1113, 1175, 1737, 2126, 2199
MaeII ACGT 3 cut(s) 566, 1413, 2010
MaeIII GTNAC 6 cut(s) 502, 969, 1243, 1888, 1978, 2006
MalI GATC 7 cut(s) 22, 1044, 1128, 1697, 2214, 2230, 2308
MboI GATC 7 cut(s) 20, 1042, 1126, 1695, 2212, 2228, 2306
MfeI CAATTG 3 cut(s) 108, 189, 2116
MflI RGATCY 3 cut(s) 20, 1042, 1695
MhlI GDGCHC 1 cut(s) 346
MlyI GAGTC 6 cut(s) 323, 353, 536, 970, 1189, 1942
Mph1103I ATGCAT 1 cut(s) 2035
MspCI CTTAAG 1 cut(s) 1568
MspR9I CCNGG 2 cut(s) 1281, 2184
MunI CAATTG 3 cut(s) 108, 189, 2116
Mva1269I GAATGC 2 cut(s) 566, 1073
MvaI CCWGG 2 cut(s) 1281, 2184
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 6 cut(s) 113, 292, 341, 958, 1301, 2043
NdeII GATC 7 cut(s) 20, 1042, 1126, 1695, 2212, 2228, 2306
NheI GCTAGC 1 cut(s) 1736
NlaIV GGNNCC 9 cut(s) 135, 168, 186, 438, 586, 1258, 1511, 1697, 2134
NmuCI GTSAC 3 cut(s) 1243, 1978, 2006
NsiI ATGCAT 1 cut(s) 2035
NspI RCATGY 2 cut(s) 1111, 2037
NspV TTCGAA 2 cut(s) 8, 1077
PaeI GCATGC 1 cut(s) 2037
PagI TCATGA 1 cut(s) 2040
PciI ACATGT 1 cut(s) 1107
PctI GAATGC 2 cut(s) 566, 1073
PfeI GAWTC 4 cut(s) 67, 731, 1199, 1337
PflMI CCANNNNNTGG 2 cut(s) 1138, 1167
PkrI GCNGC 7 cut(s) 297, 645, 922, 1294, 1604, 1766, 2048
PleI GAGTC 6 cut(s) 323, 353, 535, 970, 1188, 1942
PpsI GAGTC 6 cut(s) 323, 353, 535, 970, 1188, 1942
Ppu21I YACGTR 1 cut(s) 567
PpuMI RGGWCCY 1 cut(s) 899
PscI ACATGT 1 cut(s) 1107
Psp124BI GAGCTC 1 cut(s) 346
Psp5II RGGWCCY 1 cut(s) 899
Psp6I CCWGG 2 cut(s) 1279, 2182
PspGI CCWGG 2 cut(s) 1279, 2182
PspN4I GGNNCC 9 cut(s) 135, 168, 186, 438, 586, 1258, 1511, 1697, 2134
PspPI GGNCC 2 cut(s) 436, 899
PspPPI RGGWCCY 1 cut(s) 899
PstI CTGCAG 2 cut(s) 645, 922
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 3 cut(s) 20, 1042, 1695
RsaI GTAC 5 cut(s) 716, 1097, 2111, 2195, 2312
RsaNI GTAC 5 cut(s) 715, 1096, 2110, 2194, 2311
SacI GAGCTC 1 cut(s) 346
SatI GCNGC 7 cut(s) 296, 644, 921, 1293, 1603, 1765, 2047
Sau3AI GATC 7 cut(s) 20, 1042, 1126, 1695, 2212, 2228, 2306
Sau96I GGNCC 2 cut(s) 436, 899
ScaI AGTACT 2 cut(s) 716, 2195
SchI GAGTC 6 cut(s) 323, 353, 536, 970, 1189, 1942
ScrFI CCNGG 2 cut(s) 1281, 2184
SduI GDGCHC 1 cut(s) 346
SfaNI GCATC 9 cut(s) 401, 503, 565, 854, 1161, 1390, 1546, 1834, 1940
SfcI CTRYAG 2 cut(s) 641, 918
SfuI TTCGAA 2 cut(s) 8, 1077
SinI GGWCC 2 cut(s) 436, 899
SmlI CTYRAG 4 cut(s) 668, 1261, 1568, 1963
SmoI CTYRAG 4 cut(s) 668, 1261, 1568, 1963
SpeI ACTAGT 1 cut(s) 160
SphI GCATGC 1 cut(s) 2037
SsiI CCGC 8 cut(s) 40, 295, 377, 697, 1302, 1541, 1666, 1740
SspI AATATT 1 cut(s) 1788
SspMI CTAG 8 cut(s) 161, 287, 1101, 1113, 1175, 1737, 2126, 2199
SstI GAGCTC 1 cut(s) 346
StyD4I CCNGG 2 cut(s) 1279, 2182
TaaI ACNGT 2 cut(s) 174, 705
TaiI ACGT 3 cut(s) 569, 1416, 2013
TaqI TCGA 8 cut(s) 8, 381, 1077, 1240, 1466, 1934, 2215, 2227
TatI WGTACW 3 cut(s) 714, 1095, 2193
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 4 cut(s) 67, 731, 1199, 1337
TscAI CASTG 5 cut(s) 177, 361, 523, 1833, 2104
TseFI GTSAC 3 cut(s) 1243, 1978, 2006
TseI GCWGC 6 cut(s) 643, 920, 1292, 1602, 1764, 2046
Tsp45I GTSAC 3 cut(s) 1243, 1978, 2006
TspGWI ACGGA 2 cut(s) 163, 1125
TspRI CASTG 5 cut(s) 177, 361, 523, 1833, 2104
Van91I CCANNNNNTGG 2 cut(s) 1138, 1167
Vha464I CTTAAG 1 cut(s) 1568
VpaK11BI GGWCC 2 cut(s) 436, 899
XapI RAATTY 4 cut(s) 302, 889, 1230, 1528
XceI RCATGY 2 cut(s) 1111, 2037
XmiI GTMKAC 1 cut(s) 569
XspI CTAG 8 cut(s) 161, 287, 1101, 1113, 1175, 1737, 2126, 2199
ZrmI AGTACT 2 cut(s) 716, 2195
Zsp2I ATGCAT 1 cut(s) 2035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.