Rorug07G0250000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006230
Physical Location & Seq
Forward (+)
23160190 .. 23162477
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0250000.1

Sequence Viewer

Length: 1428 bp
ATGGAGGCGATAGTTTTATACCCATCACCACCTATTGGCCACTTGGTTTCCATGGTAGAGTTGGGCAAATTCATACTTACTTGCCATCCTTCATGTAGTATCCACATACTTATCACCACCCCACCTTACAGAGCCGATGACACCGCCCCATATATTGCCTCTGTCTCTGCCACTACTCCCTCCATCATCTTCCACCATCTACCAACTATCTCTCTCCCTCCCTCCTCCACTTCCTCTCCCAACCATGAAACCCTAACCTTTGAGGTCCTTCGGCTCAACAACCCCAACGTCCACAAAGCCCTCCTTTCCATCTCCAACAACTTTACTGTTCAAGCTTTTATCATGGACTTCTTCTGTGGTCTTGGGCTTTCTGTTGCTATTGATCTGAATATCCCAGGATATTTTTTCTTCACGTCTGGTGCAGGATGCCTAGCTTCCTTTCTTACACTCCCTGCTATTCACAAAAACACTGACAAGAGCCTCAAAGACCTTAACACCCTTCTCGCTATTCCAGGAGTACCACCAATACCTTCCTCTGATATGCCAAAACCAGTTTTGGTACGTAATGACAAGGCCTATGAGTGCTTCCTAGAAAGCTCAACACAATTACCCAAATCAGCCGGGATTATCGTGAACACGTTTGAATCACTCGAATCTAGGGCCATCAGAGCAATATCAGATGGACTATGCTTGCCTGAAGATGTTCCCACACCACCCATCTTTTGCATAGGTCCGTTAATCTTTGCTCACAATCAAAGAGGTGGTGGTAATGATGATGTGCCTGAGTGTTTGACATGGCTGGACTCACAGCCAAGTGGCAGTGTGGTCTTCCTCTGTTTTGGAAGCTTAGGATTGTTTACAAAGGAGCAGTTGCGGGAAATAGCTGCGGGATTAGAGAGGAGTGGCCAAAGGTTCTTGTGGGTTGTCCGTAATCCACCTTCTCATAATCAAAGCGTTGCTATTGCAGGCCAAGTGGATCCGGATTTGGATTATTTGCTTCCAGATGGTTTTTTGGATAGAACTAAGGATAGGGGTCTTGTAGTGAAGTCATGGGCACCACAAGTGGCAGTGCTGAATCATGATTCTGTAGGTGGGTTTGTGAGTCACTGTGGGTGGAACTCGGTGTTGGAGGCAGTGTGTGCTGGGGTGCCAATTGTGTCTTGGCCACTCTATGCAGAGCAGAGATTTAATAGGGTAATTTTGGTGGAGGAAATAAAGATTGCTTTGCCAATGAACGAGTCACTAGACGGTTTTGTAAATGCAACAGAGGTGGAGAAGCGAGTTAGAGAGTTGATGGACTCGGAGGAAGGAGAGTCAATCAGGAAGAGGACCAAGGCCTTGAAGAGTGAAGCAAATGCTGCTCTGAGTGAAGCCGGGACATCTCGGATTGCATTCACTAAACTTGTCGAATCATGGAATCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

475

Amino Acids

51.7

Weight (kDa)

5.41

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 265 - 399 2.3e-22 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1054, 1147
AccB7I CCANNNNNTGG 1 cut(s) 35
AccIII TCCGGA 1 cut(s) 979
AciI CCGC 3 cut(s) 144, 874, 887
AclWI GGATC 2 cut(s) 971, 984
AcoI YGGCCR 3 cut(s) 37, 904, 1163
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 717
AfaI GTAC 2 cut(s) 519, 561
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 636
AgsI TTSAA 3 cut(s) 332, 644, 1342
AjiI CACGTC 1 cut(s) 414
AjnI CCWGG 2 cut(s) 394, 511
AjuI GAANNNNNNNTTGG 2 cut(s) 1109, 1141
AluBI AGCT 5 cut(s) 335, 434, 597, 846, 884
AluI AGCT 5 cut(s) 335, 434, 597, 846, 884
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 2 cut(s) 971, 984
Aor13HI TCCGGA 1 cut(s) 979
AoxI GGCC 7 cut(s) 37, 573, 660, 904, 967, 1163, 1335
ApeKI GCWGC 2 cut(s) 884, 1358
ApoI RAATTY 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 702
AspS9I GGNCC 4 cut(s) 265, 660, 731, 1329
AsuC2I CCSGG 2 cut(s) 622, 1375
AsuHPI GGTGA 2 cut(s) 18, 106
AvaII GGWCC 3 cut(s) 265, 731, 1329
BaeGI GKGCMC 1 cut(s) 1057
BalI TGGCCA 3 cut(s) 39, 906, 1165
BamHI GGATCC 1 cut(s) 976
BanI GGYRCC 2 cut(s) 1054, 1147
BarI GAAGNNNNNNTAC 2 cut(s) 922, 954
BbsI GAAGAC 1 cut(s) 820
BbvI GCAGC 2 cut(s) 871, 1345
BciT130I CCWGG 2 cut(s) 396, 513
BciVI GTATCC 1 cut(s) 110
BcnI CCSGG 2 cut(s) 622, 1375
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 4 cut(s) 431, 590, 657, 1244
BfmI CTRYAG 1 cut(s) 1086
BfuI GTATCC 1 cut(s) 110
BisI GCNGC 2 cut(s) 885, 1359
BlsI GCNGC 2 cut(s) 886, 1360
Bme1390I CCNGG 4 cut(s) 396, 513, 622, 1375
Bme18I GGWCC 3 cut(s) 265, 731, 1329
BmgBI CACGTC 1 cut(s) 414
BmgT120I GGNCC 4 cut(s) 265, 660, 731, 1329
BmiI GGNNCC 3 cut(s) 978, 1056, 1149
BmrFI CCNGG 4 cut(s) 396, 513, 622, 1375
BmsI GCATC 1 cut(s) 416
BpiI GAAGAC 1 cut(s) 820
Bpu10I CCTNAGC 1 cut(s) 847
BpuMI CCSGG 2 cut(s) 622, 1375
BsaAI YACGTR 1 cut(s) 563
BsaJI CCNNGG 3 cut(s) 51, 394, 1332
BsaWI WCCGGW 1 cut(s) 979
BsaXI ACNNNNNCTCC 4 cut(s) 220, 250, 1121, 1151
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 551
BseAI TCCGGA 1 cut(s) 979
BseBI CCWGG 2 cut(s) 396, 513
BseDI CCNNGG 3 cut(s) 51, 394, 1332
BseGI GGATG 2 cut(s) 85, 431
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 2 cut(s) 774, 1355
BseNI ACTGG 1 cut(s) 551
BseRI GAGGAG 2 cut(s) 214, 913
BseSI GKGCMC 1 cut(s) 1057
BseXI GCAGC 2 cut(s) 871, 1345
BseYI CCCAGC 1 cut(s) 1142
BsgI GTGCAG 1 cut(s) 441
BshFI GGCC 7 cut(s) 39, 575, 662, 906, 969, 1165, 1337
BshNI GGYRCC 2 cut(s) 1054, 1147
BsiSI CCGG 3 cut(s) 621, 980, 1374
BslFI GGGAC 1 cut(s) 1390
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 1390
BsmI GAATGC 1 cut(s) 1391
BsnI GGCC 7 cut(s) 39, 575, 662, 906, 969, 1165, 1337
Bsp1286I GDGCHC 1 cut(s) 1057
Bsp13I TCCGGA 1 cut(s) 979
Bsp143I GATC 2 cut(s) 382, 976
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 3 cut(s) 144, 874, 887
BspANI GGCC 7 cut(s) 39, 575, 662, 906, 969, 1165, 1337
BspCNI CTCAG 2 cut(s) 775, 1356
BspEI TCCGGA 1 cut(s) 979
BspHI TCATGA 1 cut(s) 1078
BspLI GGNNCC 3 cut(s) 978, 1056, 1149
BspPI GGATC 2 cut(s) 971, 984
BspT107I GGYRCC 2 cut(s) 1054, 1147
BsrI ACTGG 1 cut(s) 551
BssECI CCNNGG 3 cut(s) 51, 394, 1332
BssMI GATC 2 cut(s) 382, 976
BssT1I CCWWGG 2 cut(s) 51, 1332
Bst2UI CCWGG 2 cut(s) 396, 513
Bst4CI ACNGT 3 cut(s) 328, 1109, 1250
Bst6I CTCTTC 2 cut(s) 1319, 1337
BstAPI GCANNNNNTGC 2 cut(s) 1139, 1358
BstBAI YACGTR 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 692, 967
BstDEI CTNAG 4 cut(s) 783, 847, 1023, 1364
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 85, 431
BstKTI GATC 2 cut(s) 385, 979
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 382, 976
BstMWI GCNNNNNNNGC 3 cut(s) 668, 1139, 1358
BstNI CCWGG 2 cut(s) 396, 513
BstSCI CCNGG 4 cut(s) 394, 511, 620, 1373
BstSFI CTRYAG 1 cut(s) 1086
BstSLI GKGCMC 1 cut(s) 1057
BstSNI TACGTA 1 cut(s) 563
BstV1I GCAGC 2 cut(s) 871, 1345
BstV2I GAAGAC 1 cut(s) 820
BstX2I RGATCY 1 cut(s) 976
BstYI RGATCY 1 cut(s) 976
BsuI GTATCC 1 cut(s) 110
BsuRI GGCC 7 cut(s) 39, 575, 662, 906, 969, 1165, 1337
BtgI CCRYGG 1 cut(s) 51
BtrI CACGTC 1 cut(s) 414
BtsCI GGATG 2 cut(s) 85, 431
BtsI GCAGTG 3 cut(s) 826, 1074, 1140
BtsIMutI CAGTG 5 cut(s) 468, 826, 1074, 1105, 1140
Cac8I GCNNGC 2 cut(s) 692, 967
CciI TCATGA 1 cut(s) 1078
Cfr13I GGNCC 4 cut(s) 265, 660, 731, 1329
Csp6I GTAC 2 cut(s) 518, 560
CspCI CAANNNNNGTGG 2 cut(s) 1251, 1286
CviAII CATG 8 cut(s) 52, 93, 245, 343, 795, 1050, 1079, 1413
CviQI GTAC 2 cut(s) 518, 560
DdeI CTNAG 4 cut(s) 783, 847, 1023, 1364
DpnI GATC 2 cut(s) 384, 978
DpnII GATC 2 cut(s) 382, 976
EaeI YGGCCR 3 cut(s) 37, 904, 1163
Eam1104I CTCTTC 2 cut(s) 1319, 1337
EarI CTCTTC 2 cut(s) 1319, 1337
Eco105I TACGTA 1 cut(s) 563
Eco130I CCWWGG 2 cut(s) 51, 1332
Eco147I AGGCCT 2 cut(s) 575, 1337
Eco47I GGWCC 3 cut(s) 265, 731, 1329
Eco57I CTGAAG 1 cut(s) 717
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 394, 511
EcoT14I CCWWGG 2 cut(s) 51, 1332
ErhI CCWWGG 2 cut(s) 51, 1332
FaeI CATG 8 cut(s) 55, 96, 248, 346, 798, 1053, 1082, 1416
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 1 cut(s) 1390
FatI CATG 8 cut(s) 51, 92, 244, 342, 794, 1049, 1078, 1412
FauI CCCGC 2 cut(s) 867, 880
Fnu4HI GCNGC 2 cut(s) 885, 1359
FokI GGATG 2 cut(s) 72, 438
Fsp4HI GCNGC 2 cut(s) 885, 1359
FspBI CTAG 4 cut(s) 431, 590, 657, 1244
GluI GCNGC 2 cut(s) 885, 1359
GsaI CCCAGC 1 cut(s) 1146
HaeIII GGCC 7 cut(s) 39, 575, 662, 906, 969, 1165, 1337
HapII CCGG 3 cut(s) 621, 980, 1374
Hin1II CATG 8 cut(s) 55, 96, 248, 346, 798, 1053, 1082, 1416
HindIII AAGCTT 2 cut(s) 333, 844
HpaII CCGG 3 cut(s) 621, 980, 1374
HphI GGTGA 2 cut(s) 18, 106
Hpy166II GTNNAC 3 cut(s) 292, 634, 858
Hpy188I TCNGA 7 cut(s) 387, 538, 668, 679, 1303, 1365, 1386
Hpy188III TCNNGA 5 cut(s) 631, 980, 1001, 1079, 1321
Hpy8I GTNNAC 3 cut(s) 292, 634, 858
HpyAV CCTTC 6 cut(s) 99, 278, 509, 540, 948, 1301
HpyCH4III ACNGT 3 cut(s) 328, 1109, 1250
HpyCH4IV ACGT 4 cut(s) 288, 413, 562, 638
HpyCH4V TGCA 6 cut(s) 422, 726, 965, 1175, 1262, 1391
HpyF10VI GCNNNNNNNGC 3 cut(s) 668, 1139, 1358
HpyF3I CTNAG 4 cut(s) 783, 847, 1023, 1364
HpySE526I ACGT 4 cut(s) 288, 413, 562, 638
Hsp92II CATG 8 cut(s) 55, 96, 248, 346, 798, 1053, 1082, 1416
Kpn2I TCCGGA 1 cut(s) 979
Kzo9I GATC 2 cut(s) 382, 976
LmnI GCTCC 1 cut(s) 865
Lsp1109I GCAGC 2 cut(s) 871, 1345
LweI GCATC 1 cut(s) 416
MaeI CTAG 4 cut(s) 431, 590, 657, 1244
MaeII ACGT 4 cut(s) 288, 413, 562, 638
MaeIII GTNAC 2 cut(s) 1103, 1239
MalI GATC 2 cut(s) 384, 978
MboI GATC 2 cut(s) 382, 976
MboII GAAGA 7 cut(s) 181, 343, 400, 710, 820, 1336, 1354
MfeI CAATTG 1 cut(s) 1152
MflI RGATCY 1 cut(s) 976
MhlI GDGCHC 1 cut(s) 1057
MlsI TGGCCA 3 cut(s) 39, 906, 1165
MluCI AATT 4 cut(s) 68, 605, 1152, 1197
MluNI TGGCCA 3 cut(s) 39, 906, 1165
MlyI GAGTC 5 cut(s) 797, 1111, 1247, 1292, 1322
MmeI TCCRAC 2 cut(s) 339, 1107
Mox20I TGGCCA 3 cut(s) 39, 906, 1165
MroI TCCGGA 1 cut(s) 979
MroXI GAANNNNTTC 1 cut(s) 702
MscI TGGCCA 3 cut(s) 39, 906, 1165
MseI TTAA 3 cut(s) 492, 737, 1188
Msp20I TGGCCA 3 cut(s) 39, 906, 1165
MspI CCGG 3 cut(s) 621, 980, 1374
MspR9I CCNGG 4 cut(s) 396, 513, 622, 1375
MunI CAATTG 1 cut(s) 1152
Mva1269I GAATGC 1 cut(s) 1391
MvaI CCWGG 2 cut(s) 396, 513
MwoI GCNNNNNNNGC 3 cut(s) 668, 1139, 1358
NciI CCSGG 2 cut(s) 622, 1375
NcoI CCATGG 1 cut(s) 51
NdeII GATC 2 cut(s) 382, 976
NlaIII CATG 8 cut(s) 55, 96, 248, 346, 798, 1053, 1082, 1416
NlaIV GGNNCC 3 cut(s) 978, 1056, 1149
NmuCI GTSAC 2 cut(s) 1103, 1239
PagI TCATGA 1 cut(s) 1078
PceI AGGCCT 2 cut(s) 575, 1337
PctI GAATGC 1 cut(s) 1391
PdmI GAANNNNTTC 1 cut(s) 702
PfeI GAWTC 6 cut(s) 644, 653, 1075, 1082, 1409, 1417
PflMI CCANNNNNTGG 1 cut(s) 35
PfoI TCCNGGA 1 cut(s) 511
PkrI GCNGC 2 cut(s) 886, 1360
PleI GAGTC 5 cut(s) 797, 1110, 1246, 1292, 1321
PpsI GAGTC 5 cut(s) 797, 1110, 1246, 1292, 1321
Ppu21I YACGTR 1 cut(s) 563
PpuMI RGGWCCY 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 2 cut(s) 394, 511
PspFI CCCAGC 1 cut(s) 1142
PspGI CCWGG 2 cut(s) 394, 511
PspN4I GGNNCC 3 cut(s) 978, 1056, 1149
PspPI GGNCC 4 cut(s) 265, 660, 731, 1329
PspPPI RGGWCCY 1 cut(s) 265
PsuI RGATCY 1 cut(s) 976
RsaI GTAC 2 cut(s) 519, 561
RsaNI GTAC 2 cut(s) 518, 560
SaqAI TTAA 3 cut(s) 492, 737, 1188
SatI GCNGC 2 cut(s) 885, 1359
Sau3AI GATC 2 cut(s) 382, 976
Sau96I GGNCC 4 cut(s) 265, 660, 731, 1329
SchI GAGTC 5 cut(s) 797, 1111, 1247, 1292, 1322
ScrFI CCNGG 4 cut(s) 396, 513, 622, 1375
SduI GDGCHC 1 cut(s) 1057
SfaNI GCATC 1 cut(s) 416
SfcI CTRYAG 1 cut(s) 1086
SinI GGWCC 3 cut(s) 265, 731, 1329
SnaBI TACGTA 1 cut(s) 563
Sse9I AATT 4 cut(s) 68, 605, 1152, 1197
SseBI AGGCCT 2 cut(s) 575, 1337
SsiI CCGC 3 cut(s) 144, 874, 887
SspMI CTAG 4 cut(s) 431, 590, 657, 1244
StuI AGGCCT 2 cut(s) 575, 1337
StyD4I CCNGG 4 cut(s) 394, 511, 620, 1373
StyI CCWWGG 2 cut(s) 51, 1332
TaaI ACNGT 3 cut(s) 328, 1109, 1250
TaiI ACGT 4 cut(s) 291, 416, 565, 641
TaqI TCGA 2 cut(s) 651, 1407
TasI AATT 4 cut(s) 68, 605, 1152, 1197
TfiI GAWTC 6 cut(s) 644, 653, 1075, 1082, 1409, 1417
Tru1I TTAA 3 cut(s) 492, 737, 1188
Tru9I TTAA 3 cut(s) 492, 737, 1188
TscAI CASTG 5 cut(s) 475, 826, 1074, 1112, 1140
TseFI GTSAC 2 cut(s) 1103, 1239
TseI GCWGC 2 cut(s) 884, 1358
Tsp45I GTSAC 2 cut(s) 1103, 1239
TspDTI ATGAA 4 cut(s) 61, 81, 261, 1247
TspGWI ACGGA 2 cut(s) 723, 917
TspRI CASTG 5 cut(s) 475, 826, 1074, 1112, 1140
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 3 cut(s) 265, 731, 1329
XapI RAATTY 1 cut(s) 68
XcmI CCANNNNNNNNNTGG 2 cut(s) 58, 1158
XmnI GAANNNNTTC 1 cut(s) 702
XspI CTAG 4 cut(s) 431, 590, 657, 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.