Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005100

Physical Location & Seq

Genomic Coordinates Forward (+)

55344478 .. 55348035

Gene Structure 3558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33038

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGGGCATCCCCAGCAGCCAAAAAGAAGAGTGGCATTTTTGTTGATTGATGGTATGGGCGATGTGTCAATACCAAAGTTGGGATTTAAGACACCTCTTCAGGCGGCCAAACTGCCGAATTTGGATGCCATAGCATCCGCTGGAGTTAATGGTCTGATGGACCCTGTTGAAGTTGGTCTGGGTTGTGGAAGTGACACAGCCCATCTTTCTCTAATGGTTACAACCCTAGGGTATATTACCGGGGCCGCGGTGCATTTGAGTCCATGGGAGCAGGGTTGGCAATGTCACCAGGTGACATTGCATTTAAGGACATCTAATTTTGCAACGTTGGATGAAAAAACTGAAATAGTCATCAGTAGGAGGGCTGACAGACACTTTGAAGAAGAAGGGCCCATACTGTGTGCAGCACTCGATGGATTGAAGTTGCCTTCTTTTCCCGAATATGAAGTCAGAGTCAGGTATGCAACAGAACATAGATGTGGAGTGGTGGTAAAAGGACCAAGTTTAAGTGGAAACATATCAGGAACAGACCCGTTGAAGGACAACCGTTTACTTTTGCAAGCTGAAGCTATAGATGGTAGTGATGAGGCACGACATACAGCTAAAGTTGTTAACGAGTTATCCAAGGAAATGTCAAAGATTCTCATTGCTCATCCACTGAATGCAAAGCGGGCCTCTGAAGGGAAGAACATAGCTAATGTTGTCCTTTTACGAGGCTGTGGTATCCGGATTGAGGTTTCTCCATTTACAAAGAAACATGGGTTATGGCCTTGTATGGTAGCTCCAACAAAAATCATTGCTGGATTGGGCTTATCTCTTGGCATTGATATCGTGGAAGCTCCTGGAGCAACTGGAGACTACAGAACACTTCTAACTTCCAAAACAACTGCAATAGCCAAGGCACTCTCAGCTCCTCTGCAGTCTTGTCCCAATGTGTTTGTGCCAGGGGAAGATGAACACAAACCAGGCCGATCAGATGGCTATGATTTTGGGTTCCTCCACATAAAGGCTATAGATGATGCAGGTCATGATAAGGCAACCATTTTCAAAGTCAAAGGATTGGAAGCTGTGGATCGAGCTATAGGGCAGCTGGCCAGGCTCCTTTGGGAGACTGAATCAACTGGAAAATTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metalloenzyme PhosphMutase

Protein Analysis

378

Amino Acids

40.68

Weight (kDa)

6.9

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	10 - 288	6.9e-11	Metalloenzyme superfamily
PhosphMutase	PF10143	45 - 221	6.6e-30	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Metalloenzyme	PF01676	326 - 366	8.5e-06	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30841 AT3G30841 AT4G09520
fragaria_vesca	FvH4_5g30870 FvH4_5g30870 FvH4_6g45710
malus_domestica	MD17G1071600.v1.1
prunus_persica	Prupe.3G243300_v2.0.a1 Prupe.3G243300_v2.0.a1
pyrus_communis	pycom17g07100
rosa_chinensis	RchiOBHm_Chr2g0163861 RchiOBHm_Chr5g0053071
rosa_laevigata	RLG00000021422 RLG00000034774
rosa_multiflora	Rmu_co7996526.1_g000001 Rmu_sc0001181.1_g000008 Rmu_sc0005917.1_g000001 Rmu_sc0037762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028940 Rroxscaffold_2G00086940
rosa_rugosa	Rorug02G0505000 Rorug05G0268300
rosa_samantha	Rh2AG573100 Rh2BG583800 Rh2CG554800 Rh2DG593400 Rh5AG340800 Rh5BG351300 Rh5DG367700
rosa_wichuraiana	Rw2G047390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1013
AccII	CGCG	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	726
AciI	CCGC	5 cut(s)	104, 138, 246, 248, 670
AclI	AACGTT	1 cut(s)	326
AclWI	GGATC	1 cut(s)	1080
AcoI	YGGCCR	2 cut(s)	105, 1092
AcsI	RAATTY	2 cut(s)	118, 1127
AcuI	CTGAAG	3 cut(s)	83, 585, 699
AdeI	CACNNNGTG	1 cut(s)	292
AfiI	CCNNNNNNNGG	5 cut(s)	80, 538, 681, 733, 1006
AgsI	TTSAA	5 cut(s)	170, 380, 421, 538, 1048
AjnI	CCWGG	5 cut(s)	288, 841, 943, 964, 1094
Alw26I	GTCTC	2 cut(s)	849, 1103
AlwI	GGATC	1 cut(s)	1080
Aor13HI	TCCGGA	1 cut(s)	726
AoxI	GGCC	7 cut(s)	105, 243, 389, 672, 767, 967, 1092
ApaI	GGGCCC	1 cut(s)	393
ApeKI	GCWGC	3 cut(s)	16, 404, 1087
ApoI	RAATTY	2 cut(s)	118, 1127
ArsI	GACNNNNNNTTYG	4 cut(s)	359, 391, 432, 464
AspA2I	CCTAGG	1 cut(s)	226
AspS9I	GGNCC	6 cut(s)	160, 243, 389, 390, 497, 672
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	278, 304
AvaII	GGWCC	2 cut(s)	160, 497
AvrII	CCTAGG	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	393
BalI	TGGCCA	1 cut(s)	1094
BanII	GRGCYC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbvI	GCAGC	3 cut(s)	28, 416, 1099
BccI	CCATC	6 cut(s)	44, 151, 210, 407, 569, 971
BcgI	CGANNNNNNTGC	2 cut(s)	811, 845
BciT130I	CCWGG	5 cut(s)	290, 843, 945, 966, 1096
BciVI	GTATCC	1 cut(s)	734
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	849, 1103
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	5 cut(s)	570, 859, 917, 1011, 1080
BfuAI	ACCTGC	1 cut(s)	1013
BfuI	GTATCC	1 cut(s)	734
BisI	GCNGC	5 cut(s)	17, 105, 246, 405, 1088
BlnI	CCTAGG	1 cut(s)	226
BlsI	GCNGC	5 cut(s)	18, 106, 247, 406, 1089
Bme1390I	CCNGG	6 cut(s)	241, 290, 843, 945, 966, 1096
Bme18I	GGWCC	2 cut(s)	160, 497
BmgT120I	GGNCC	6 cut(s)	160, 243, 389, 390, 497, 672
BmiI	GGNNCC	5 cut(s)	162, 244, 391, 995, 1100
BmrFI	CCNGG	6 cut(s)	241, 290, 843, 945, 966, 1096
BmsI	GCATC	4 cut(s)	16, 115, 143, 1009
BpmI	CTGGAG	3 cut(s)	162, 864, 873
BpuMI	CCSGG	1 cut(s)	241
BsaJI	CCNNGG	7 cut(s)	226, 240, 246, 263, 624, 897, 944
BsaWI	WCCGGW	1 cut(s)	726
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	5 cut(s)	80, 538, 681, 733, 1006
Bse1I	ACTGG	2 cut(s)	856, 1126
Bse3DI	GCAATG	4 cut(s)	287, 296, 645, 795
BseAI	TCCGGA	1 cut(s)	726
BseBI	CCWGG	5 cut(s)	290, 843, 945, 966, 1096
BseDI	CCNNGG	7 cut(s)	226, 240, 246, 263, 624, 897, 944
BseGI	GGATG	5 cut(s)	7, 130, 134, 337, 652
BseLI	CCNNNNNNNGG	5 cut(s)	80, 538, 681, 733, 1006
BseMI	GCAATG	4 cut(s)	287, 296, 645, 795
BseMII	CTCAG	1 cut(s)	921
BseNI	ACTGG	2 cut(s)	856, 1126
BseRI	GAGGAG	1 cut(s)	903
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	3 cut(s)	28, 416, 1099
BseYI	CCCAGC	1 cut(s)	12
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	7 cut(s)	107, 245, 391, 674, 769, 969, 1094
BsiSI	CCGG	2 cut(s)	240, 727
BslFI	GGGAC	1 cut(s)	912
BslI	CCNNNNNNNGG	5 cut(s)	80, 538, 681, 733, 1006
BsmAI	GTCTC	2 cut(s)	849, 1103
BsmFI	GGGAC	1 cut(s)	912
BsmI	GAATGC	1 cut(s)	667
BsnI	GGCC	7 cut(s)	107, 245, 391, 674, 769, 969, 1094
Bsp120I	GGGCCC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp13I	TCCGGA	1 cut(s)	726
Bsp143I	GATC	2 cut(s)	971, 1072
Bsp19I	CCATGG	1 cut(s)	263
BspACI	CCGC	5 cut(s)	104, 138, 246, 248, 670
BspANI	GGCC	7 cut(s)	107, 245, 391, 674, 769, 969, 1094
BspCNI	CTCAG	1 cut(s)	920
BspEI	TCCGGA	1 cut(s)	726
BspFNI	CGCG	1 cut(s)	248
BspHI	TCATGA	1 cut(s)	1027
BspLI	GGNNCC	5 cut(s)	162, 244, 391, 995, 1100
BspMAI	CTGCAG	1 cut(s)	921
BspMI	ACCTGC	1 cut(s)	1013
BspPI	GGATC	1 cut(s)	1080
BsrDI	GCAATG	4 cut(s)	287, 296, 645, 795
BsrI	ACTGG	2 cut(s)	856, 1126
BssECI	CCNNGG	7 cut(s)	226, 240, 246, 263, 624, 897, 944
BssMI	GATC	2 cut(s)	971, 1072
BssT1I	CCWWGG	4 cut(s)	226, 263, 624, 897
Bst2UI	CCWGG	5 cut(s)	290, 843, 945, 966, 1096
Bst4CI	ACNGT	2 cut(s)	399, 548
Bst6I	CTCTTC	2 cut(s)	22, 102
BstC8I	GCNNGC	3 cut(s)	561, 672, 1092
BstDEI	CTNAG	1 cut(s)	907
BstDSI	CCRYGG	2 cut(s)	246, 263
BstF5I	GGATG	5 cut(s)	7, 130, 134, 337, 652
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	2 cut(s)	974, 1075
BstMAI	GTCTC	2 cut(s)	849, 1103
BstMBI	GATC	2 cut(s)	971, 1072
BstMWI	GCNNNNNNNGC	6 cut(s)	13, 277, 671, 845, 908, 1096
BstNI	CCWGG	5 cut(s)	290, 843, 945, 966, 1096
BstSCI	CCNGG	6 cut(s)	239, 288, 841, 943, 964, 1094
BstSFI	CTRYAG	5 cut(s)	570, 859, 917, 1011, 1080
BstSLI	GKGCMC	1 cut(s)	393
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	3 cut(s)	28, 416, 1099
BsuI	GTATCC	1 cut(s)	734
BsuRI	GGCC	7 cut(s)	107, 245, 391, 674, 769, 969, 1094
BtgI	CCRYGG	2 cut(s)	246, 263
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	5 cut(s)	7, 130, 134, 337, 652
BtsIMutI	CAGTG	1 cut(s)	656
BveI	ACCTGC	1 cut(s)	1013
Cac8I	GCNNGC	3 cut(s)	561, 672, 1092
CciI	TCATGA	1 cut(s)	1027
Cfr13I	GGNCC	6 cut(s)	160, 243, 389, 390, 497, 672
Cfr42I	CCGCGG	1 cut(s)	249
CsiI	ACCWGGT	1 cut(s)	288
CviAII	CATG	3 cut(s)	264, 758, 1028
DdeI	CTNAG	1 cut(s)	907
DpnI	GATC	2 cut(s)	973, 1074
DpnII	GATC	2 cut(s)	971, 1072
DraIII	CACNNNGTG	1 cut(s)	292
EaeI	YGGCCR	2 cut(s)	105, 1092
Eam1104I	CTCTTC	2 cut(s)	22, 102
EarI	CTCTTC	2 cut(s)	22, 102
Eco130I	CCWWGG	4 cut(s)	226, 263, 624, 897
Eco24I	GRGCYC	1 cut(s)	393
Eco32I	GATATC	1 cut(s)	829
Eco47I	GGWCC	2 cut(s)	160, 497
Eco57I	CTGAAG	3 cut(s)	83, 585, 699
EcoO109I	RGGNCCY	1 cut(s)	389
EcoRII	CCWGG	5 cut(s)	288, 841, 943, 964, 1094
EcoRV	GATATC	1 cut(s)	829
EcoT14I	CCWWGG	4 cut(s)	226, 263, 624, 897
EcoT38I	GRGCYC	1 cut(s)	393
ErhI	CCWWGG	4 cut(s)	226, 263, 624, 897
FaeI	CATG	3 cut(s)	267, 761, 1031
FaqI	GGGAC	1 cut(s)	912
FatI	CATG	3 cut(s)	263, 757, 1027
FauI	CCCGC	1 cut(s)	663
Fnu4HI	GCNGC	5 cut(s)	17, 105, 246, 405, 1088
FokI	GGATG	4 cut(s)	121, 137, 344, 639
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	5 cut(s)	17, 105, 246, 405, 1088
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	5 cut(s)	17, 105, 246, 405, 1088
GsaI	CCCAGC	1 cut(s)	16
GsuI	CTGGAG	3 cut(s)	162, 864, 873
HaeIII	GGCC	7 cut(s)	107, 245, 391, 674, 769, 969, 1094
HapII	CCGG	2 cut(s)	240, 727
Hin1II	CATG	3 cut(s)	267, 761, 1031
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	4 cut(s)	259, 453, 640, 1115
HpaI	GTTAAC	1 cut(s)	613
HpaII	CCGG	2 cut(s)	240, 727
HphI	GGTGA	2 cut(s)	278, 304
Hpy166II	GTNNAC	2 cut(s)	551, 613
Hpy188I	TCNGA	4 cut(s)	156, 452, 679, 976
Hpy188III	TCNNGA	4 cut(s)	437, 522, 727, 1028
Hpy8I	GTNNAC	2 cut(s)	551, 613
HpyAV	CCTTC	4 cut(s)	380, 438, 532, 674
HpyCH4III	ACNGT	2 cut(s)	399, 548
HpyCH4IV	ACGT	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	6 cut(s)	13, 277, 671, 845, 908, 1096
HpyF3I	CTNAG	1 cut(s)	907
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	3 cut(s)	267, 761, 1031
Kpn2I	TCCGGA	1 cut(s)	726
KspAI	GTTAAC	1 cut(s)	613
KspI	CCGCGG	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	971, 1072
LmnI	GCTCC	6 cut(s)	268, 787, 844, 845, 916, 1104
Lsp1109I	GCAGC	3 cut(s)	28, 416, 1099
LweI	GCATC	4 cut(s)	16, 115, 143, 1009
MabI	ACCWGGT	1 cut(s)	288
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	326
MaeIII	GTNAC	4 cut(s)	191, 217, 284, 292
MalI	GATC	2 cut(s)	973, 1074
MboI	GATC	2 cut(s)	971, 1072
MboII	GAAGA	6 cut(s)	39, 89, 392, 395, 697, 962
MhlI	GDGCHC	1 cut(s)	393
MlsI	TGGCCA	1 cut(s)	1094
MluCI	AATT	3 cut(s)	118, 316, 1127
MluNI	TGGCCA	1 cut(s)	1094
MlyI	GAGTC	2 cut(s)	268, 462
MmeI	TCCRAC	2 cut(s)	309, 809
MnlI	CCTC	8 cut(s)	105, 354, 580, 685, 707, 727, 924, 1007
Mox20I	TGGCCA	1 cut(s)	1094
MroI	TCCGGA	1 cut(s)	726
MscI	TGGCCA	1 cut(s)	1094
MseI	TTAA	5 cut(s)	87, 147, 305, 506, 612
MslI	CAYNNNNRTG	1 cut(s)	477
Msp20I	TGGCCA	1 cut(s)	1094
MspA1I	CMGCKG	3 cut(s)	140, 248, 1090
MspI	CCGG	2 cut(s)	240, 727
MspR9I	CCNGG	6 cut(s)	241, 290, 843, 945, 966, 1096
Mva1269I	GAATGC	1 cut(s)	667
MvaI	CCWGG	5 cut(s)	290, 843, 945, 966, 1096
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	6 cut(s)	13, 277, 671, 845, 908, 1096
NciI	CCSGG	1 cut(s)	241
NcoI	CCATGG	1 cut(s)	263
NdeII	GATC	2 cut(s)	971, 1072
NlaIII	CATG	3 cut(s)	267, 761, 1031
NlaIV	GGNNCC	5 cut(s)	162, 244, 391, 995, 1100
NmuCI	GTSAC	3 cut(s)	191, 284, 292
PagI	TCATGA	1 cut(s)	1027
PctI	GAATGC	1 cut(s)	667
PfeI	GAWTC	2 cut(s)	640, 1115
PfoI	TCCNGGA	1 cut(s)	841
PkrI	GCNGC	5 cut(s)	18, 106, 247, 406, 1089
PleI	GAGTC	2 cut(s)	267, 461
PpsI	GAGTC	2 cut(s)	267, 461
Psp1406I	AACGTT	1 cut(s)	326
Psp6I	CCWGG	5 cut(s)	288, 841, 943, 964, 1094
PspFI	CCCAGC	1 cut(s)	12
PspGI	CCWGG	5 cut(s)	288, 841, 943, 964, 1094
PspN4I	GGNNCC	5 cut(s)	162, 244, 391, 995, 1100
PspOMI	GGGCCC	1 cut(s)	389
PspPI	GGNCC	6 cut(s)	160, 243, 389, 390, 497, 672
PstI	CTGCAG	1 cut(s)	921
PvuII	CAGCTG	1 cut(s)	1090
RseI	CAYNNNNRTG	1 cut(s)	477
SacII	CCGCGG	1 cut(s)	249
SaqAI	TTAA	5 cut(s)	87, 147, 305, 506, 612
SatI	GCNGC	5 cut(s)	17, 105, 246, 405, 1088
Sau3AI	GATC	2 cut(s)	971, 1072
Sau96I	GGNCC	6 cut(s)	160, 243, 389, 390, 497, 672
SchI	GAGTC	2 cut(s)	268, 462
ScrFI	CCNGG	6 cut(s)	241, 290, 843, 945, 966, 1096
SduI	GDGCHC	1 cut(s)	393
SexAI	ACCWGGT	1 cut(s)	288
SfaNI	GCATC	4 cut(s)	16, 115, 143, 1009
SfcI	CTRYAG	5 cut(s)	570, 859, 917, 1011, 1080
Sfr303I	CCGCGG	1 cut(s)	249
SgrBI	CCGCGG	1 cut(s)	249
SinI	GGWCC	2 cut(s)	160, 497
SmiMI	CAYNNNNRTG	1 cut(s)	477
Sse9I	AATT	3 cut(s)	118, 316, 1127
SsiI	CCGC	5 cut(s)	104, 138, 246, 248, 670
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	6 cut(s)	239, 288, 841, 943, 964, 1094
StyI	CCWWGG	4 cut(s)	226, 263, 624, 897
TaaI	ACNGT	2 cut(s)	399, 548
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	2 cut(s)	411, 1075
TasI	AATT	3 cut(s)	118, 316, 1127
TauI	GCSGC	2 cut(s)	107, 248
TfiI	GAWTC	2 cut(s)	640, 1115
Tru1I	TTAA	5 cut(s)	87, 147, 305, 506, 612
Tru9I	TTAA	5 cut(s)	87, 147, 305, 506, 612
TscAI	CASTG	1 cut(s)	663
TseFI	GTSAC	3 cut(s)	191, 284, 292
TseI	GCWGC	3 cut(s)	16, 404, 1087
Tsp45I	GTSAC	3 cut(s)	191, 284, 292
TspDTI	ATGAA	3 cut(s)	348, 459, 969
TspRI	CASTG	1 cut(s)	663
VpaK11BI	GGWCC	2 cut(s)	160, 497
XapI	RAATTY	2 cut(s)	118, 1127
XmaJI	CCTAGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.