Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001181.1

Orthogroup ID

OG0005100

Physical Location & Seq

Genomic Coordinates Reverse (-)

41486 .. 42456

Gene Structure 971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001181.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggtagctccaacaaaaatcattgctggattgggcttatctcttggcattgatatcctggaagctcctggagcaactggagactacagaacacttctaactttcaaagcaactgcaatagccaaggcactctcggctcctctgcagtcttgccccaatgtgtttgtgccaggggaagatgaacacaaaccaggccgatcagatggctatgattttgggttcctccacataaaggctatagatgatgcaggtcatgacaaggcaaccattttcaaagtcaaaggattggaagctgtggatcgagctatagggcagctggccaggctcctttgggagactgaatcaactggaaaatttcagtactttctttgtgttacaggagaccactctaccccagttgaatatggagaccacagctttgagtcagttccgttcacaatatgttcattgaaagattttgtgggtgttgtaggtgtggaaacgattttgggttgttcgcttgatccatttcctcttccaaccgtaaaagagtgtgaatatccaacagaacatgtcgagatggaacaagagcccaccaaacagcctcgagctttcagtggtgattcagtttgtgagtttaatgagatagcggcagcaagaggatgtcttggacgtttttctggcggtgagatgatgggagtaataaagaatttcctggagctagaagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metalloenzyme PhosphMutase

Protein Analysis

236

Amino Acids

25.47

Weight (kDa)

4.8

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30841 AT3G30841 AT4G09520
fragaria_vesca	FvH4_5g30870 FvH4_5g30870 FvH4_6g45710
malus_domestica	MD17G1071600.v1.1
prunus_persica	Prupe.3G243300_v2.0.a1 Prupe.3G243300_v2.0.a1
pyrus_communis	pycom17g07100
rosa_chinensis	RchiOBHm_Chr2g0163861 RchiOBHm_Chr5g0053071
rosa_laevigata	RLG00000021422 RLG00000034774
rosa_multiflora	Rmu_co7996526.1_g000001 Rmu_sc0001181.1_g000008 Rmu_sc0005917.1_g000001 Rmu_sc0037762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028940 Rroxscaffold_2G00086940
rosa_rugosa	Rorug02G0505000 Rorug05G0268300
rosa_samantha	Rh2AG573100 Rh2BG583800 Rh2CG554800 Rh2DG593400 Rh5AG340800 Rh5BG351300 Rh5DG367700
rosa_wichuraiana	Rw2G047390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	239
AciI	CCGC	2 cut(s)	629, 663
AclWI	GGATC	2 cut(s)	306, 497
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	2 cut(s)	353, 688
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	4 cut(s)	106, 274, 401, 451
AjnI	CCWGG	6 cut(s)	57, 67, 169, 190, 320, 693
AluBI	AGCT	8 cut(s)	8, 65, 293, 305, 316, 417, 590, 700
AluI	AGCT	8 cut(s)	8, 65, 293, 305, 316, 417, 590, 700
Alw26I	GTCTC	4 cut(s)	75, 329, 375, 402
AlwI	GGATC	2 cut(s)	306, 497
Ama87I	CYCGRG	1 cut(s)	585
AoxI	GGCC	2 cut(s)	193, 318
ApeKI	GCWGC	2 cut(s)	313, 632
ApoI	RAATTY	2 cut(s)	353, 688
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
AsuHPI	GGTGA	2 cut(s)	611, 677
AvaI	CYCGRG	1 cut(s)	585
BalI	TGGCCA	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	573
BbvI	GCAGC	2 cut(s)	325, 644
BccI	CCATC	3 cut(s)	197, 553, 667
BciT130I	CCWGG	6 cut(s)	59, 69, 171, 192, 322, 695
BcoDI	GTCTC	4 cut(s)	75, 329, 375, 402
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	4 cut(s)	85, 143, 237, 306
BfuAI	ACCTGC	1 cut(s)	239
BisI	GCNGC	3 cut(s)	314, 630, 633
BlsI	GCNGC	3 cut(s)	315, 631, 634
BmcAI	AGTACT	1 cut(s)	362
Bme1390I	CCNGG	6 cut(s)	59, 69, 171, 192, 322, 695
BmeT110I	CYCGRG	1 cut(s)	585
BmiI	GGNNCC	3 cut(s)	138, 221, 326
BmrFI	CCNGG	6 cut(s)	59, 69, 171, 192, 322, 695
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	389
BpmI	CTGGAG	2 cut(s)	90, 99
BsaI	GGTCTC	2 cut(s)	375, 402
BsaJI	CCNNGG	2 cut(s)	123, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	3 cut(s)	82, 352, 395
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	6 cut(s)	59, 69, 171, 192, 322, 695
BseDI	CCNNGG	2 cut(s)	123, 170
BseGI	GGATG	1 cut(s)	647
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	21
BseNI	ACTGG	3 cut(s)	82, 352, 395
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	325, 644
BshFI	GGCC	2 cut(s)	195, 320
BsiHKCI	CYCGRG	1 cut(s)	585
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	4 cut(s)	75, 329, 375, 402
BsnI	GGCC	2 cut(s)	195, 320
Bso31I	GGTCTC	2 cut(s)	375, 402
BsoBI	CYCGRG	1 cut(s)	585
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	3 cut(s)	197, 298, 502
BspACI	CCGC	2 cut(s)	629, 663
BspANI	GGCC	2 cut(s)	195, 320
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	138, 221, 326
BspMAI	CTGCAG	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	2 cut(s)	306, 497
BspTNI	GGTCTC	2 cut(s)	375, 402
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	3 cut(s)	82, 352, 395
BssECI	CCNNGG	2 cut(s)	123, 170
BssMI	GATC	3 cut(s)	197, 298, 502
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	6 cut(s)	59, 69, 171, 192, 322, 695
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	647
BstKTI	GATC	3 cut(s)	200, 301, 505
BstMAI	GTCTC	4 cut(s)	75, 329, 375, 402
BstMBI	GATC	3 cut(s)	197, 298, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 134, 322
BstNI	CCWGG	6 cut(s)	59, 69, 171, 192, 322, 695
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	6 cut(s)	57, 67, 169, 190, 320, 693
BstSFI	CTRYAG	4 cut(s)	85, 143, 237, 306
BstV1I	GCAGC	2 cut(s)	325, 644
BsuRI	GGCC	2 cut(s)	195, 320
BtsCI	GGATG	1 cut(s)	647
BtsIMutI	CAGTG	1 cut(s)	601
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	318
CciI	TCATGA	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	3 cut(s)	254, 551, 708
CviQI	GTAC	1 cut(s)	361
DpnI	GATC	3 cut(s)	199, 300, 504
DpnII	GATC	3 cut(s)	197, 298, 502
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	573
Eco31I	GGTCTC	2 cut(s)	375, 402
Eco32I	GATATC	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	585
EcoRII	CCWGG	6 cut(s)	57, 67, 169, 190, 320, 693
EcoRV	GATATC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	257, 554, 711
FaiI	YATR	9 cut(s)	210, 230, 239, 255, 308, 405, 442, 552, 709
FatI	CATG	3 cut(s)	253, 550, 707
Fnu4HI	GCNGC	3 cut(s)	314, 630, 633
FokI	GGATG	1 cut(s)	654
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	3 cut(s)	314, 630, 633
FspBI	CTAG	1 cut(s)	701
GluI	GCNGC	3 cut(s)	314, 630, 633
GsuI	CTGGAG	2 cut(s)	90, 99
HaeIII	GGCC	2 cut(s)	195, 320
Hin1II	CATG	3 cut(s)	257, 554, 711
HinfI	GANTC	3 cut(s)	341, 422, 602
HphI	GGTGA	2 cut(s)	611, 677
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	254, 556
Hpy8I	GTNNAC	1 cut(s)	435
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	1 cut(s)	652
HpyCH4V	TGCA	3 cut(s)	116, 145, 248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 134, 322
HpySE526I	ACGT	1 cut(s)	652
Hsp92II	CATG	3 cut(s)	257, 554, 711
Kzo9I	GATC	3 cut(s)	197, 298, 502
LmnI	GCTCC	6 cut(s)	13, 70, 71, 142, 330, 697
Lsp1109I	GCAGC	2 cut(s)	325, 644
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	1 cut(s)	652
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	3 cut(s)	199, 300, 504
MboI	GATC	3 cut(s)	197, 298, 502
MboII	GAAGA	2 cut(s)	188, 506
MhlI	GDGCHC	1 cut(s)	573
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	2 cut(s)	353, 688
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	3 cut(s)	35, 542, 566
MnlI	CCTC	5 cut(s)	150, 233, 522, 594, 632
Mox20I	TGGCCA	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	316
MspR9I	CCNGG	6 cut(s)	59, 69, 171, 192, 322, 695
MvaI	CCWGG	6 cut(s)	59, 69, 171, 192, 322, 695
MwoI	GCNNNNNNNGC	3 cut(s)	71, 134, 322
NdeII	GATC	3 cut(s)	197, 298, 502
NlaIII	CATG	3 cut(s)	257, 554, 711
NlaIV	GGNNCC	3 cut(s)	138, 221, 326
NmeAIII	GCCGAG	1 cut(s)	113
NspI	RCATGY	1 cut(s)	554
PaeR7I	CTCGAG	1 cut(s)	585
PagI	TCATGA	1 cut(s)	253
PciI	ACATGT	1 cut(s)	550
PfeI	GAWTC	2 cut(s)	341, 602
PfoI	TCCNGGA	3 cut(s)	57, 67, 693
PkrI	GCNGC	3 cut(s)	315, 631, 634
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PscI	ACATGT	1 cut(s)	550
Psp6I	CCWGG	6 cut(s)	57, 67, 169, 190, 320, 693
PspGI	CCWGG	6 cut(s)	57, 67, 169, 190, 320, 693
PspN4I	GGNNCC	3 cut(s)	138, 221, 326
PspXI	VCTCGAGB	1 cut(s)	585
PstI	CTGCAG	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	316
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	3 cut(s)	314, 630, 633
Sau3AI	GATC	3 cut(s)	197, 298, 502
ScaI	AGTACT	1 cut(s)	362
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	6 cut(s)	59, 69, 171, 192, 322, 695
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	4 cut(s)	85, 143, 237, 306
Sfr274I	CTCGAG	1 cut(s)	585
SlaI	CTCGAG	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	585
SmoI	CTYRAG	1 cut(s)	585
Sse9I	AATT	2 cut(s)	353, 688
SsiI	CCGC	2 cut(s)	629, 663
SspMI	CTAG	1 cut(s)	701
StyD4I	CCNGG	6 cut(s)	57, 67, 169, 190, 320, 693
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	1 cut(s)	655
TaqI	TCGA	3 cut(s)	301, 555, 586
TasI	AATT	2 cut(s)	353, 688
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	1 cut(s)	632
TfiI	GAWTC	2 cut(s)	341, 602
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	1 cut(s)	601
TseI	GCWGC	2 cut(s)	313, 632
TspDTI	ATGAA	2 cut(s)	195, 435
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	601
XapI	RAATTY	2 cut(s)	353, 688
XceI	RCATGY	1 cut(s)	554
XhoI	CTCGAG	1 cut(s)	585
XspI	CTAG	1 cut(s)	701
ZrmI	AGTACT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.