Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005917.1

Orthogroup ID

OG0005100

Physical Location & Seq

Genomic Coordinates Forward (+)

1444 .. 2822

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005917.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atggggcatccccagcagccaaaaagaagagtggcatttttgttgattgatggtgtgggcgatgtgtcaataccaaagttgggatttaagactcctcttcaggcagccaaactgccgaatttggatgccatagcagccgctggagttaatggtctaatggaccctgttgaagttggtctgggttgtggaagtgacacagcccacctttctctaatgggttacaaccctagggtatattaccggggccgcggtgcatttgagtccatgggagcaggattggcaatgtcaccaggtgacattgcatttaagtctaattttgcaacactggatgaaaaaactggaataattatcagtaggagggctgacagacactttgaagaagaagggcccatactgtgtgcagcactcgatggaatgaagttgccatcttttcccgaatatgaagtcagagtcaggtatgcaacagaacatagatgtggagtggttgtaaaaggaccaagtttaagtggaaacatatcaggaacagaccctttgaaggacaaccgtttacttttgcaagctgaagctctagatggtagtgacgaggcacggcatacagctaaagttgttaacgagttatccaaggaaatatcaaagattctcattgctcatccactgaatgcaaagcgggcctctgaagggaagaacatagctaatgttgtccttttacgaggctgtggtatccggattgaggtcagttatctcaaacctacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metalloenzyme PhosphMutase

Protein Analysis

251

Amino Acids

26.91

Weight (kDa)

8.62

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30841 AT3G30841 AT4G09520
fragaria_vesca	FvH4_5g30870 FvH4_5g30870 FvH4_6g45710
malus_domestica	MD17G1071600.v1.1
prunus_persica	Prupe.3G243300_v2.0.a1 Prupe.3G243300_v2.0.a1
pyrus_communis	pycom17g07100
rosa_chinensis	RchiOBHm_Chr2g0163861 RchiOBHm_Chr5g0053071
rosa_laevigata	RLG00000021422 RLG00000034774
rosa_multiflora	Rmu_co7996526.1_g000001 Rmu_sc0001181.1_g000008 Rmu_sc0005917.1_g000001 Rmu_sc0037762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028940 Rroxscaffold_2G00086940
rosa_rugosa	Rorug02G0505000 Rorug05G0268300
rosa_samantha	Rh2AG573100 Rh2BG583800 Rh2CG554800 Rh2DG593400 Rh5AG340800 Rh5BG351300 Rh5DG367700
rosa_wichuraiana	Rw2G047390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	249
AccIII	TCCGGA	1 cut(s)	723
AciI	CCGC	4 cut(s)	138, 247, 249, 667
AcsI	RAATTY	1 cut(s)	118
AcuI	CTGAAG	3 cut(s)	83, 582, 696
AdeI	CACNNNGTG	1 cut(s)	293
AfiI	CCNNNNNNNGG	4 cut(s)	80, 535, 678, 730
AgsI	TTSAA	3 cut(s)	170, 377, 535
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	4 cut(s)	560, 566, 599, 692
AluI	AGCT	4 cut(s)	560, 566, 599, 692
AlwNI	CAGNNNCTG	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	723
AoxI	GGCC	3 cut(s)	244, 386, 669
ApaI	GGGCCC	1 cut(s)	390
ApeKI	GCWGC	4 cut(s)	16, 104, 134, 401
ApoI	RAATTY	1 cut(s)	118
ArsI	GACNNNNNNTTYG	4 cut(s)	356, 388, 429, 461
AspA2I	CCTAGG	1 cut(s)	227
AspS9I	GGNCC	6 cut(s)	160, 244, 386, 387, 494, 669
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	279, 305
AvaII	GGWCC	2 cut(s)	160, 494
AvrII	CCTAGG	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	390
BarI	GAAGNNNNNNTAC	2 cut(s)	375, 407
BbvI	GCAGC	4 cut(s)	28, 116, 146, 413
BccI	CCATC	4 cut(s)	44, 404, 433, 566
BceAI	ACGGC	1 cut(s)	605
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	731
BcnI	CCSGG	1 cut(s)	242
BfaI	CTAG	2 cut(s)	228, 569
BfuI	GTATCC	1 cut(s)	731
BisI	GCNGC	6 cut(s)	17, 105, 135, 138, 247, 402
BlnI	CCTAGG	1 cut(s)	227
BlsI	GCNGC	6 cut(s)	18, 106, 136, 139, 248, 403
Bme1390I	CCNGG	2 cut(s)	242, 291
Bme18I	GGWCC	2 cut(s)	160, 494
BmgT120I	GGNCC	6 cut(s)	160, 244, 386, 387, 494, 669
BmiI	GGNNCC	3 cut(s)	162, 245, 388
BmrFI	CCNGG	2 cut(s)	242, 291
BmsI	GCATC	2 cut(s)	16, 115
BpmI	CTGGAG	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	753
BsaJI	CCNNGG	5 cut(s)	227, 241, 247, 264, 621
BsaWI	WCCGGW	1 cut(s)	723
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 535, 678, 730
Bse1I	ACTGG	2 cut(s)	330, 343
Bse3DI	GCAATG	3 cut(s)	288, 297, 642
BseAI	TCCGGA	1 cut(s)	723
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	5 cut(s)	227, 241, 247, 264, 621
BseGI	GGATG	4 cut(s)	7, 130, 334, 649
BseLI	CCNNNNNNNGG	4 cut(s)	80, 535, 678, 730
BseMI	GCAATG	3 cut(s)	288, 297, 642
BseNI	ACTGG	2 cut(s)	330, 343
BseRI	GAGGAG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	4 cut(s)	28, 116, 146, 413
BseYI	CCCAGC	1 cut(s)	12
BsgI	GTGCAG	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	3 cut(s)	246, 388, 671
BsiSI	CCGG	2 cut(s)	241, 724
BslI	CCNNNNNNNGG	4 cut(s)	80, 535, 678, 730
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	3 cut(s)	246, 388, 671
Bsp120I	GGGCCC	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp13I	TCCGGA	1 cut(s)	723
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	4 cut(s)	138, 247, 249, 667
BspANI	GGCC	3 cut(s)	246, 388, 671
BspEI	TCCGGA	1 cut(s)	723
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	162, 245, 388
BsrDI	GCAATG	3 cut(s)	288, 297, 642
BsrI	ACTGG	2 cut(s)	330, 343
BssECI	CCNNGG	5 cut(s)	227, 241, 247, 264, 621
BssT1I	CCWWGG	3 cut(s)	227, 264, 621
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	396, 545
Bst6I	CTCTTC	2 cut(s)	22, 102
BstBAI	YACGTR	1 cut(s)	753
BstC8I	GCNNGC	2 cut(s)	558, 669
BstDSI	CCRYGG	2 cut(s)	247, 264
BstF5I	GGATG	4 cut(s)	7, 130, 334, 649
BstFNI	CGCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 134, 278, 668
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	2 cut(s)	240, 289
BstSLI	GKGCMC	1 cut(s)	390
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	4 cut(s)	28, 116, 146, 413
BsuI	GTATCC	1 cut(s)	731
BsuRI	GGCC	3 cut(s)	246, 388, 671
BtgI	CCRYGG	2 cut(s)	247, 264
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	4 cut(s)	7, 130, 334, 649
BtsIMutI	CAGTG	2 cut(s)	323, 653
Cac8I	GCNNGC	2 cut(s)	558, 669
CaiI	CAGNNNCTG	1 cut(s)	140
Cfr13I	GGNCC	6 cut(s)	160, 244, 386, 387, 494, 669
Cfr42I	CCGCGG	1 cut(s)	250
CsiI	ACCWGGT	1 cut(s)	289
CviAII	CATG	1 cut(s)	265
DraIII	CACNNNGTG	1 cut(s)	293
Eam1104I	CTCTTC	2 cut(s)	22, 102
EarI	CTCTTC	2 cut(s)	22, 102
Eco130I	CCWWGG	3 cut(s)	227, 264, 621
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	2 cut(s)	160, 494
Eco57I	CTGAAG	3 cut(s)	83, 582, 696
EcoO109I	RGGNCCY	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	3 cut(s)	227, 264, 621
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	3 cut(s)	227, 264, 621
FaeI	CATG	1 cut(s)	268
FatI	CATG	1 cut(s)	264
FauI	CCCGC	1 cut(s)	660
Fnu4HI	GCNGC	6 cut(s)	17, 105, 135, 138, 247, 402
FokI	GGATG	3 cut(s)	137, 341, 636
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	6 cut(s)	17, 105, 135, 138, 247, 402
FspBI	CTAG	2 cut(s)	228, 569
GluI	GCNGC	6 cut(s)	17, 105, 135, 138, 247, 402
GsaI	CCCAGC	1 cut(s)	16
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	3 cut(s)	246, 388, 671
HapII	CCGG	2 cut(s)	241, 724
Hin1II	CATG	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	4 cut(s)	91, 260, 450, 637
HpaI	GTTAAC	1 cut(s)	610
HpaII	CCGG	2 cut(s)	241, 724
HphI	GGTGA	2 cut(s)	279, 305
Hpy166II	GTNNAC	2 cut(s)	548, 610
Hpy188I	TCNGA	2 cut(s)	449, 676
Hpy188III	TCNNGA	4 cut(s)	434, 519, 569, 724
Hpy8I	GTNNAC	2 cut(s)	548, 610
HpyAV	CCTTC	3 cut(s)	377, 529, 671
HpyCH4III	ACNGT	2 cut(s)	396, 545
HpyCH4IV	ACGT	1 cut(s)	752
HpyCH4V	TGCA	7 cut(s)	254, 302, 320, 401, 461, 556, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 134, 278, 668
HpySE526I	ACGT	1 cut(s)	752
Hsp92II	CATG	1 cut(s)	268
Kpn2I	TCCGGA	1 cut(s)	723
KspAI	GTTAAC	1 cut(s)	610
KspI	CCGCGG	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	269
Lsp1109I	GCAGC	4 cut(s)	28, 116, 146, 413
LweI	GCATC	2 cut(s)	16, 115
MabI	ACCWGGT	1 cut(s)	289
MaeI	CTAG	2 cut(s)	228, 569
MaeII	ACGT	1 cut(s)	752
MaeIII	GTNAC	5 cut(s)	191, 218, 285, 293, 578
MboII	GAAGA	5 cut(s)	39, 89, 389, 392, 694
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	3 cut(s)	118, 313, 345
MlyI	GAGTC	3 cut(s)	85, 269, 459
MnlI	CCTC	6 cut(s)	105, 351, 577, 682, 704, 724
MroI	TCCGGA	1 cut(s)	723
MseI	TTAA	5 cut(s)	87, 147, 306, 503, 609
MslI	CAYNNNNRTG	1 cut(s)	474
MspA1I	CMGCKG	2 cut(s)	140, 249
MspI	CCGG	2 cut(s)	241, 724
MspR9I	CCNGG	2 cut(s)	242, 291
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	4 cut(s)	13, 134, 278, 668
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	264
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	3 cut(s)	162, 245, 388
NmuCI	GTSAC	4 cut(s)	191, 285, 293, 578
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	1 cut(s)	637
PkrI	GCNGC	6 cut(s)	18, 106, 136, 139, 248, 403
PleI	GAGTC	3 cut(s)	85, 268, 458
PpsI	GAGTC	3 cut(s)	85, 268, 458
Ppu21I	YACGTR	1 cut(s)	753
Psp6I	CCWGG	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	162, 245, 388
PspOMI	GGGCCC	1 cut(s)	386
PspPI	GGNCC	6 cut(s)	160, 244, 386, 387, 494, 669
PstNI	CAGNNNCTG	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	474
SacII	CCGCGG	1 cut(s)	250
SaqAI	TTAA	5 cut(s)	87, 147, 306, 503, 609
SatI	GCNGC	6 cut(s)	17, 105, 135, 138, 247, 402
Sau96I	GGNCC	6 cut(s)	160, 244, 386, 387, 494, 669
SchI	GAGTC	3 cut(s)	85, 269, 459
ScrFI	CCNGG	2 cut(s)	242, 291
SduI	GDGCHC	1 cut(s)	390
SexAI	ACCWGGT	1 cut(s)	289
SfaNI	GCATC	2 cut(s)	16, 115
Sfr303I	CCGCGG	1 cut(s)	250
SgrBI	CCGCGG	1 cut(s)	250
SinI	GGWCC	2 cut(s)	160, 494
SmiMI	CAYNNNNRTG	1 cut(s)	474
Sse9I	AATT	3 cut(s)	118, 313, 345
SsiI	CCGC	4 cut(s)	138, 247, 249, 667
SspMI	CTAG	2 cut(s)	228, 569
StyD4I	CCNGG	2 cut(s)	240, 289
StyI	CCWWGG	3 cut(s)	227, 264, 621
TaaI	ACNGT	2 cut(s)	396, 545
TaiI	ACGT	1 cut(s)	755
TaqI	TCGA	1 cut(s)	408
TasI	AATT	3 cut(s)	118, 313, 345
TauI	GCSGC	2 cut(s)	140, 249
TfiI	GAWTC	1 cut(s)	637
Tru1I	TTAA	5 cut(s)	87, 147, 306, 503, 609
Tru9I	TTAA	5 cut(s)	87, 147, 306, 503, 609
TscAI	CASTG	2 cut(s)	330, 660
TseFI	GTSAC	4 cut(s)	191, 285, 293, 578
TseI	GCWGC	4 cut(s)	16, 104, 134, 401
Tsp45I	GTSAC	4 cut(s)	191, 285, 293, 578
TspDTI	ATGAA	3 cut(s)	345, 431, 456
TspRI	CASTG	2 cut(s)	330, 660
VpaK11BI	GGWCC	2 cut(s)	160, 494
XapI	RAATTY	1 cut(s)	118
XbaI	TCTAGA	1 cut(s)	568
XmaJI	CCTAGG	1 cut(s)	227
XspI	CTAG	2 cut(s)	228, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.