Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005100

Physical Location & Seq

Genomic Coordinates Reverse (-)

54108769 .. 54111192

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG351300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGAGCAGGGTTGGCAATGTCACCAGGTGACATTGCATTTAAGTCTAATTTTGCAACGTTGGATGAAAAAACTGAAATAGTCATCAGTAGGAGGGCTGACAGACACTTTGAAGAAGAAGGGCCCATACTGTGTGCAGCACTCGATGGATTGAAGTTGCCTTCTTTTCCCGAATATGAAGTCAGAGTCAGGTATGCAACAGAACATAGATGTGGAGTGGTGGTAAAAGGACCAAGTTTAAGTGGAAACATATCAGGAACAGACCCGTTGAAGGACAACCGTTTACTTTTGCAAGCTGAAGCTATAGATGGTAGTGATGAGGCACGACATACAGCTAAAGTTGTTAACGAGTTATCCAAGGAAATGTCAAAGATTCTCATTGCTCATCCACTGAATGCAAAGCGGGCCTCTGAAGGGAAGAACATAGCTAATGTTGTCCTTTTACGAGGCTGTGGTATCCGGATTGAGGTTTCTCCATTTACAAAGAAACATGGGTTATGGCCTTGTATGGTAGCTCCAACAAAAATCATTGCTGGATTGGGCTTATCTCTTGGCATTGATATCGTGGAAGCTCCTGGAGCAACTGGAGACTACAGAACACTTCTAACTTCCAAAACAACTGCAATAGCCAAGGCACTCTCAGCTCCTCTGCAGTCTTGTCCCAATGTGTTTGTGCCAGGGGAAGATGAACACAAACCAGGCCGATCAGATGGCTATGATTTTGGGTTCCTCCACATAAAGGCTATAGATGATGCAGGTCATGATAAGGCAACCATTTTCAAAGTCAAAGGATTGGAAGCTGTGGATCGAGCTATAGGGCAGCTGGCCAGGCTCCTTTGGGAGACTGAATCAACTGGAAAATTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metalloenzyme PhosphMutase

Protein Analysis

289

Amino Acids

31.09

Weight (kDa)

6.72

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhosphMutase	PF10143	1 - 132	6e-28	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Metalloenzyme	PF01676	237 - 277	5.7e-06	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30841 AT3G30841 AT4G09520
fragaria_vesca	FvH4_5g30870 FvH4_5g30870 FvH4_6g45710
malus_domestica	MD17G1071600.v1.1
prunus_persica	Prupe.3G243300_v2.0.a1 Prupe.3G243300_v2.0.a1
pyrus_communis	pycom17g07100
rosa_chinensis	RchiOBHm_Chr2g0163861 RchiOBHm_Chr5g0053071
rosa_laevigata	RLG00000021422 RLG00000034774
rosa_multiflora	Rmu_co7996526.1_g000001 Rmu_sc0001181.1_g000008 Rmu_sc0005917.1_g000001 Rmu_sc0037762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028940 Rroxscaffold_2G00086940
rosa_rugosa	Rorug02G0505000 Rorug05G0268300
rosa_samantha	Rh2AG573100 Rh2BG583800 Rh2CG554800 Rh2DG593400 Rh5AG340800 Rh5BG351300 Rh5DG367700
rosa_wichuraiana	Rw2G047390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	746
AccIII	TCCGGA	1 cut(s)	459
AciI	CCGC	1 cut(s)	403
AclI	AACGTT	1 cut(s)	59
AclWI	GGATC	1 cut(s)	813
AcoI	YGGCCR	1 cut(s)	825
AcsI	RAATTY	1 cut(s)	860
AcuI	CTGAAG	2 cut(s)	318, 432
AdeI	CACNNNGTG	1 cut(s)	29
AfiI	CCNNNNNNNGG	4 cut(s)	271, 414, 466, 739
AgsI	TTSAA	4 cut(s)	113, 154, 271, 781
AjnI	CCWGG	5 cut(s)	25, 574, 676, 697, 827
Alw26I	GTCTC	2 cut(s)	582, 836
AlwI	GGATC	1 cut(s)	813
Aor13HI	TCCGGA	1 cut(s)	459
AoxI	GGCC	5 cut(s)	122, 405, 500, 700, 825
ApaI	GGGCCC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	137, 820
ApoI	RAATTY	1 cut(s)	860
ArsI	GACNNNNNNTTYG	4 cut(s)	92, 124, 165, 197
AspS9I	GGNCC	4 cut(s)	122, 123, 230, 405
AsuHPI	GGTGA	2 cut(s)	15, 41
AvaII	GGWCC	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	827
BanII	GRGCYC	1 cut(s)	126
BarI	GAAGNNNNNNTAC	2 cut(s)	111, 143
BbvI	GCAGC	2 cut(s)	149, 832
BccI	CCATC	3 cut(s)	140, 302, 704
BcgI	CGANNNNNNTGC	2 cut(s)	544, 578
BciT130I	CCWGG	5 cut(s)	27, 576, 678, 699, 829
BciVI	GTATCC	1 cut(s)	467
BcoDI	GTCTC	2 cut(s)	582, 836
BfmI	CTRYAG	5 cut(s)	303, 592, 650, 744, 813
BfuAI	ACCTGC	1 cut(s)	746
BfuI	GTATCC	1 cut(s)	467
BisI	GCNGC	2 cut(s)	138, 821
BlsI	GCNGC	2 cut(s)	139, 822
Bme1390I	CCNGG	5 cut(s)	27, 576, 678, 699, 829
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	4 cut(s)	122, 123, 230, 405
BmiI	GGNNCC	3 cut(s)	124, 728, 833
BmrFI	CCNGG	5 cut(s)	27, 576, 678, 699, 829
BmsI	GCATC	1 cut(s)	742
BpmI	CTGGAG	2 cut(s)	597, 606
BsaJI	CCNNGG	3 cut(s)	357, 630, 677
BsaWI	WCCGGW	1 cut(s)	459
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	4 cut(s)	271, 414, 466, 739
Bse1I	ACTGG	2 cut(s)	589, 859
Bse3DI	GCAATG	4 cut(s)	24, 33, 378, 528
BseAI	TCCGGA	1 cut(s)	459
BseBI	CCWGG	5 cut(s)	27, 576, 678, 699, 829
BseDI	CCNNGG	3 cut(s)	357, 630, 677
BseGI	GGATG	2 cut(s)	70, 385
BseLI	CCNNNNNNNGG	4 cut(s)	271, 414, 466, 739
BseMI	GCAATG	4 cut(s)	24, 33, 378, 528
BseMII	CTCAG	1 cut(s)	654
BseNI	ACTGG	2 cut(s)	589, 859
BseRI	GAGGAG	1 cut(s)	636
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	149, 832
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	5 cut(s)	124, 407, 502, 702, 827
BsiSI	CCGG	1 cut(s)	460
BslFI	GGGAC	1 cut(s)	645
BslI	CCNNNNNNNGG	4 cut(s)	271, 414, 466, 739
BsmAI	GTCTC	2 cut(s)	582, 836
BsmFI	GGGAC	1 cut(s)	645
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	5 cut(s)	124, 407, 502, 702, 827
Bsp120I	GGGCCC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp13I	TCCGGA	1 cut(s)	459
Bsp143I	GATC	2 cut(s)	704, 805
BspACI	CCGC	1 cut(s)	403
BspANI	GGCC	5 cut(s)	124, 407, 502, 702, 827
BspCNI	CTCAG	1 cut(s)	653
BspEI	TCCGGA	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	3 cut(s)	124, 728, 833
BspMAI	CTGCAG	1 cut(s)	654
BspMI	ACCTGC	1 cut(s)	746
BspPI	GGATC	1 cut(s)	813
BsrDI	GCAATG	4 cut(s)	24, 33, 378, 528
BsrI	ACTGG	2 cut(s)	589, 859
BssECI	CCNNGG	3 cut(s)	357, 630, 677
BssMI	GATC	2 cut(s)	704, 805
BssT1I	CCWWGG	2 cut(s)	357, 630
Bst2UI	CCWGG	5 cut(s)	27, 576, 678, 699, 829
Bst4CI	ACNGT	2 cut(s)	132, 281
BstC8I	GCNNGC	3 cut(s)	294, 405, 825
BstDEI	CTNAG	1 cut(s)	640
BstF5I	GGATG	2 cut(s)	70, 385
BstKTI	GATC	2 cut(s)	707, 808
BstMAI	GTCTC	2 cut(s)	582, 836
BstMBI	GATC	2 cut(s)	704, 805
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 404, 578, 641, 829
BstNI	CCWGG	5 cut(s)	27, 576, 678, 699, 829
BstSCI	CCNGG	5 cut(s)	25, 574, 676, 697, 827
BstSFI	CTRYAG	5 cut(s)	303, 592, 650, 744, 813
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	149, 832
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	5 cut(s)	124, 407, 502, 702, 827
BtsCI	GGATG	2 cut(s)	70, 385
BtsIMutI	CAGTG	1 cut(s)	389
BveI	ACCTGC	1 cut(s)	746
Cac8I	GCNNGC	3 cut(s)	294, 405, 825
CciI	TCATGA	1 cut(s)	760
Cfr13I	GGNCC	4 cut(s)	122, 123, 230, 405
CsiI	ACCWGGT	1 cut(s)	25
CviAII	CATG	2 cut(s)	491, 761
DdeI	CTNAG	1 cut(s)	640
DpnI	GATC	2 cut(s)	706, 807
DpnII	GATC	2 cut(s)	704, 805
DraIII	CACNNNGTG	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	825
Eco130I	CCWWGG	2 cut(s)	357, 630
Eco24I	GRGCYC	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	2 cut(s)	318, 432
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	5 cut(s)	25, 574, 676, 697, 827
EcoRV	GATATC	1 cut(s)	562
EcoT14I	CCWWGG	2 cut(s)	357, 630
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	2 cut(s)	357, 630
FaeI	CATG	2 cut(s)	494, 764
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	2 cut(s)	490, 760
FauI	CCCGC	1 cut(s)	396
Fnu4HI	GCNGC	2 cut(s)	138, 821
FokI	GGATG	2 cut(s)	77, 372
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	2 cut(s)	138, 821
GluI	GCNGC	2 cut(s)	138, 821
GsuI	CTGGAG	2 cut(s)	597, 606
HaeIII	GGCC	5 cut(s)	124, 407, 502, 702, 827
HapII	CCGG	1 cut(s)	460
Hin1II	CATG	2 cut(s)	494, 764
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	3 cut(s)	186, 373, 848
HpaI	GTTAAC	1 cut(s)	346
HpaII	CCGG	1 cut(s)	460
HphI	GGTGA	2 cut(s)	15, 41
Hpy166II	GTNNAC	2 cut(s)	284, 346
Hpy188I	TCNGA	3 cut(s)	185, 412, 709
Hpy188III	TCNNGA	4 cut(s)	170, 255, 460, 761
Hpy8I	GTNNAC	2 cut(s)	284, 346
HpyAV	CCTTC	4 cut(s)	113, 171, 265, 407
HpyCH4III	ACNGT	2 cut(s)	132, 281
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	9 cut(s)	38, 56, 137, 197, 292, 398, 623, 652, 755
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 404, 578, 641, 829
HpyF3I	CTNAG	1 cut(s)	640
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	494, 764
Kpn2I	TCCGGA	1 cut(s)	459
KspAI	GTTAAC	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	704, 805
LmnI	GCTCC	6 cut(s)	5, 520, 577, 578, 649, 837
Lsp1109I	GCAGC	2 cut(s)	149, 832
LweI	GCATC	1 cut(s)	742
MabI	ACCWGGT	1 cut(s)	25
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	21, 29
MalI	GATC	2 cut(s)	706, 807
MboI	GATC	2 cut(s)	704, 805
MboII	GAAGA	4 cut(s)	125, 128, 430, 695
MhlI	GDGCHC	1 cut(s)	126
MlsI	TGGCCA	1 cut(s)	827
MluCI	AATT	2 cut(s)	49, 860
MluNI	TGGCCA	1 cut(s)	827
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	2 cut(s)	42, 542
MnlI	CCTC	7 cut(s)	87, 313, 418, 440, 460, 657, 740
Mox20I	TGGCCA	1 cut(s)	827
MroI	TCCGGA	1 cut(s)	459
MscI	TGGCCA	1 cut(s)	827
MseI	TTAA	3 cut(s)	42, 239, 345
MslI	CAYNNNNRTG	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	827
MspA1I	CMGCKG	1 cut(s)	823
MspI	CCGG	1 cut(s)	460
MspR9I	CCNGG	5 cut(s)	27, 576, 678, 699, 829
Mva1269I	GAATGC	1 cut(s)	400
MvaI	CCWGG	5 cut(s)	27, 576, 678, 699, 829
MwoI	GCNNNNNNNGC	5 cut(s)	14, 404, 578, 641, 829
NdeII	GATC	2 cut(s)	704, 805
NlaIII	CATG	2 cut(s)	494, 764
NlaIV	GGNNCC	3 cut(s)	124, 728, 833
NmuCI	GTSAC	2 cut(s)	21, 29
PagI	TCATGA	1 cut(s)	760
PctI	GAATGC	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	373, 848
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	2 cut(s)	139, 822
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp1406I	AACGTT	1 cut(s)	59
Psp6I	CCWGG	5 cut(s)	25, 574, 676, 697, 827
PspGI	CCWGG	5 cut(s)	25, 574, 676, 697, 827
PspN4I	GGNNCC	3 cut(s)	124, 728, 833
PspOMI	GGGCCC	1 cut(s)	122
PspPI	GGNCC	4 cut(s)	122, 123, 230, 405
PstI	CTGCAG	1 cut(s)	654
PvuII	CAGCTG	1 cut(s)	823
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	3 cut(s)	42, 239, 345
SatI	GCNGC	2 cut(s)	138, 821
Sau3AI	GATC	2 cut(s)	704, 805
Sau96I	GGNCC	4 cut(s)	122, 123, 230, 405
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	5 cut(s)	27, 576, 678, 699, 829
SduI	GDGCHC	1 cut(s)	126
SexAI	ACCWGGT	1 cut(s)	25
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	5 cut(s)	303, 592, 650, 744, 813
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	2 cut(s)	49, 860
SsiI	CCGC	1 cut(s)	403
StyD4I	CCNGG	5 cut(s)	25, 574, 676, 697, 827
StyI	CCWWGG	2 cut(s)	357, 630
TaaI	ACNGT	2 cut(s)	132, 281
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	144, 808
TasI	AATT	2 cut(s)	49, 860
TfiI	GAWTC	2 cut(s)	373, 848
Tru1I	TTAA	3 cut(s)	42, 239, 345
Tru9I	TTAA	3 cut(s)	42, 239, 345
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	2 cut(s)	21, 29
TseI	GCWGC	2 cut(s)	137, 820
Tsp45I	GTSAC	2 cut(s)	21, 29
TspDTI	ATGAA	3 cut(s)	81, 192, 702
TspRI	CASTG	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.