Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005100

Physical Location & Seq

Genomic Coordinates Reverse (-)

54857759 .. 54860445

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG367700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGGCATCCCCAGCAGCCAAAAAGAAGAGTGGCATTTTTGTTGATTGATGGTATGGGCGATGTGTCAATACCAAAGTTGGGATTTAAGACACCTCTTCAGGCGGCCAAACTGCCGAATTTGGATGCCATAGCATCCGCTGGAGTTAATGGTCTGATGGACCCTGTTGAAGTTGGTCTGGGTTGTGGAAGTGACACAGCCCATCTTTCTCTAATGGTTACAACCCTAGGGTATATTACCGGGGCCGCGGTGCATTTGAGTCCATGGGAGCAGGGTTGGCAATGTCACCAGGTGACATTGCATTTAAGGAGGGCTGACAGACACTTTGAAGAAGAAGGGCCCATACTGTGTGCAGCACTCGATGGATTGAAGTTGCCTTCTTTTCCCGAATATGAAGTCAGAGTCAGGTATGCAACAGAACATAGATGTGGAGTGGTGGTAAAAGGACCAAGTTTAAGTGGAAACATATCAGGAACAGACCCGTTGAAGGACAACCGTTTACTTTTGCAAGCTGAAGCTATAGATGGTAGTGATGAGGCACGACATACAGCTAAAGTTGTTAACGAGTTATCCAAGGAAATGTCAAAGATTCTCATTGCTCATCCACTGAATGCAAAGCGGGCCTCTGAAGGGAAGAACATAGCTAATGTTGTCCTTTTACGAGGCTGTGGTATCCGGATTGAGGTTTCTCCATTTACAAAGAAACATGGGTTATGGCCTTGTATGGTAGCTCCAACAAAAATCATTGCTGGATTGGGCTTATCTCTTGGCATTGATATCGTGGAAGCTCCTGGAGCAACTGGAGACTACAGAACACTTCTAACTTCCAAAACAACTGCAATAGCCAAGGCACTCTCAGCTCCTCTGCAGTCTTGTCCCAATGTGTTTGTGCCAGGGGAAGATGAACACAAACCAGGCCGATCAGATGGCTATGATTTTGGGTTCCTCCACATAAAGGCTATAGATGATGCAGGTCATGATAAGGCAACCATTTTCAAAGTCAAAGGATTGGAAGCTGTGGATCGAGCTATAGGGCAGCTGGCCAGGCTCCTTTGGGAGACTGAATCAACTGGAAAATTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metalloenzyme PhosphMutase

Protein Analysis

361

Amino Acids

38.78

Weight (kDa)

7.21

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	10 - 271	6.2e-11	Metalloenzyme superfamily
PhosphMutase	PF10143	45 - 204	2.1e-22	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Metalloenzyme	PF01676	309 - 349	7.9e-06	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30841 AT3G30841 AT4G09520
fragaria_vesca	FvH4_5g30870 FvH4_5g30870 FvH4_6g45710
malus_domestica	MD17G1071600.v1.1
prunus_persica	Prupe.3G243300_v2.0.a1 Prupe.3G243300_v2.0.a1
pyrus_communis	pycom17g07100
rosa_chinensis	RchiOBHm_Chr2g0163861 RchiOBHm_Chr5g0053071
rosa_laevigata	RLG00000021422 RLG00000034774
rosa_multiflora	Rmu_co7996526.1_g000001 Rmu_sc0001181.1_g000008 Rmu_sc0005917.1_g000001 Rmu_sc0037762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028940 Rroxscaffold_2G00086940
rosa_rugosa	Rorug02G0505000 Rorug05G0268300
rosa_samantha	Rh2AG573100 Rh2BG583800 Rh2CG554800 Rh2DG593400 Rh5AG340800 Rh5BG351300 Rh5DG367700
rosa_wichuraiana	Rw2G047390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	962
AccII	CGCG	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	675
AciI	CCGC	5 cut(s)	104, 138, 246, 248, 619
AclWI	GGATC	1 cut(s)	1029
AcoI	YGGCCR	2 cut(s)	105, 1041
AcsI	RAATTY	2 cut(s)	118, 1076
AcuI	CTGAAG	3 cut(s)	83, 534, 648
AdeI	CACNNNGTG	1 cut(s)	292
AfiI	CCNNNNNNNGG	5 cut(s)	80, 487, 630, 682, 955
AgsI	TTSAA	5 cut(s)	170, 329, 370, 487, 997
AjnI	CCWGG	5 cut(s)	288, 790, 892, 913, 1043
Alw26I	GTCTC	2 cut(s)	798, 1052
AlwI	GGATC	1 cut(s)	1029
Aor13HI	TCCGGA	1 cut(s)	675
AoxI	GGCC	7 cut(s)	105, 243, 338, 621, 716, 916, 1041
ApaI	GGGCCC	1 cut(s)	342
ApeKI	GCWGC	3 cut(s)	16, 353, 1036
ApoI	RAATTY	2 cut(s)	118, 1076
ArsI	GACNNNNNNTTYG	4 cut(s)	308, 340, 381, 413
AspA2I	CCTAGG	1 cut(s)	226
AspS9I	GGNCC	6 cut(s)	160, 243, 338, 339, 446, 621
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	278, 304
AvaII	GGWCC	2 cut(s)	160, 446
AvrII	CCTAGG	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	342
BalI	TGGCCA	1 cut(s)	1043
BanII	GRGCYC	1 cut(s)	342
BarI	GAAGNNNNNNTAC	2 cut(s)	327, 359
BbvI	GCAGC	3 cut(s)	28, 365, 1048
BccI	CCATC	6 cut(s)	44, 151, 210, 356, 518, 920
BcgI	CGANNNNNNTGC	2 cut(s)	760, 794
BciT130I	CCWGG	5 cut(s)	290, 792, 894, 915, 1045
BciVI	GTATCC	1 cut(s)	683
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	798, 1052
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	5 cut(s)	519, 808, 866, 960, 1029
BfuAI	ACCTGC	1 cut(s)	962
BfuI	GTATCC	1 cut(s)	683
BisI	GCNGC	5 cut(s)	17, 105, 246, 354, 1037
BlnI	CCTAGG	1 cut(s)	226
BlsI	GCNGC	5 cut(s)	18, 106, 247, 355, 1038
Bme1390I	CCNGG	6 cut(s)	241, 290, 792, 894, 915, 1045
Bme18I	GGWCC	2 cut(s)	160, 446
BmgT120I	GGNCC	6 cut(s)	160, 243, 338, 339, 446, 621
BmiI	GGNNCC	5 cut(s)	162, 244, 340, 944, 1049
BmrFI	CCNGG	6 cut(s)	241, 290, 792, 894, 915, 1045
BmsI	GCATC	4 cut(s)	16, 115, 143, 958
BpmI	CTGGAG	3 cut(s)	162, 813, 822
BpuMI	CCSGG	1 cut(s)	241
BsaJI	CCNNGG	7 cut(s)	226, 240, 246, 263, 573, 846, 893
BsaWI	WCCGGW	1 cut(s)	675
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	5 cut(s)	80, 487, 630, 682, 955
Bse1I	ACTGG	2 cut(s)	805, 1075
Bse3DI	GCAATG	4 cut(s)	287, 296, 594, 744
BseAI	TCCGGA	1 cut(s)	675
BseBI	CCWGG	5 cut(s)	290, 792, 894, 915, 1045
BseDI	CCNNGG	7 cut(s)	226, 240, 246, 263, 573, 846, 893
BseGI	GGATG	4 cut(s)	7, 130, 134, 601
BseLI	CCNNNNNNNGG	5 cut(s)	80, 487, 630, 682, 955
BseMI	GCAATG	4 cut(s)	287, 296, 594, 744
BseMII	CTCAG	1 cut(s)	870
BseNI	ACTGG	2 cut(s)	805, 1075
BseRI	GAGGAG	1 cut(s)	852
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	28, 365, 1048
BseYI	CCCAGC	1 cut(s)	12
BsgI	GTGCAG	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	7 cut(s)	107, 245, 340, 623, 718, 918, 1043
BsiSI	CCGG	2 cut(s)	240, 676
BslFI	GGGAC	1 cut(s)	861
BslI	CCNNNNNNNGG	5 cut(s)	80, 487, 630, 682, 955
BsmAI	GTCTC	2 cut(s)	798, 1052
BsmFI	GGGAC	1 cut(s)	861
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	7 cut(s)	107, 245, 340, 623, 718, 918, 1043
Bsp120I	GGGCCC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp13I	TCCGGA	1 cut(s)	675
Bsp143I	GATC	2 cut(s)	920, 1021
Bsp19I	CCATGG	1 cut(s)	263
BspACI	CCGC	5 cut(s)	104, 138, 246, 248, 619
BspANI	GGCC	7 cut(s)	107, 245, 340, 623, 718, 918, 1043
BspCNI	CTCAG	1 cut(s)	869
BspEI	TCCGGA	1 cut(s)	675
BspFNI	CGCG	1 cut(s)	248
BspHI	TCATGA	1 cut(s)	976
BspLI	GGNNCC	5 cut(s)	162, 244, 340, 944, 1049
BspMAI	CTGCAG	1 cut(s)	870
BspMI	ACCTGC	1 cut(s)	962
BspPI	GGATC	1 cut(s)	1029
BsrDI	GCAATG	4 cut(s)	287, 296, 594, 744
BsrI	ACTGG	2 cut(s)	805, 1075
BssECI	CCNNGG	7 cut(s)	226, 240, 246, 263, 573, 846, 893
BssMI	GATC	2 cut(s)	920, 1021
BssT1I	CCWWGG	4 cut(s)	226, 263, 573, 846
Bst2UI	CCWGG	5 cut(s)	290, 792, 894, 915, 1045
Bst4CI	ACNGT	2 cut(s)	348, 497
Bst6I	CTCTTC	2 cut(s)	22, 102
BstC8I	GCNNGC	3 cut(s)	510, 621, 1041
BstDEI	CTNAG	1 cut(s)	856
BstDSI	CCRYGG	2 cut(s)	246, 263
BstF5I	GGATG	4 cut(s)	7, 130, 134, 601
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	2 cut(s)	923, 1024
BstMAI	GTCTC	2 cut(s)	798, 1052
BstMBI	GATC	2 cut(s)	920, 1021
BstMWI	GCNNNNNNNGC	6 cut(s)	13, 277, 620, 794, 857, 1045
BstNI	CCWGG	5 cut(s)	290, 792, 894, 915, 1045
BstSCI	CCNGG	6 cut(s)	239, 288, 790, 892, 913, 1043
BstSFI	CTRYAG	5 cut(s)	519, 808, 866, 960, 1029
BstSLI	GKGCMC	1 cut(s)	342
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	3 cut(s)	28, 365, 1048
BsuI	GTATCC	1 cut(s)	683
BsuRI	GGCC	7 cut(s)	107, 245, 340, 623, 718, 918, 1043
BtgI	CCRYGG	2 cut(s)	246, 263
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	4 cut(s)	7, 130, 134, 601
BtsIMutI	CAGTG	1 cut(s)	605
BveI	ACCTGC	1 cut(s)	962
Cac8I	GCNNGC	3 cut(s)	510, 621, 1041
CciI	TCATGA	1 cut(s)	976
Cfr13I	GGNCC	6 cut(s)	160, 243, 338, 339, 446, 621
Cfr42I	CCGCGG	1 cut(s)	249
CsiI	ACCWGGT	1 cut(s)	288
CviAII	CATG	3 cut(s)	264, 707, 977
DdeI	CTNAG	1 cut(s)	856
DpnI	GATC	2 cut(s)	922, 1023
DpnII	GATC	2 cut(s)	920, 1021
DraIII	CACNNNGTG	1 cut(s)	292
EaeI	YGGCCR	2 cut(s)	105, 1041
Eam1104I	CTCTTC	2 cut(s)	22, 102
EarI	CTCTTC	2 cut(s)	22, 102
Eco130I	CCWWGG	4 cut(s)	226, 263, 573, 846
Eco24I	GRGCYC	1 cut(s)	342
Eco32I	GATATC	1 cut(s)	778
Eco47I	GGWCC	2 cut(s)	160, 446
Eco57I	CTGAAG	3 cut(s)	83, 534, 648
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRII	CCWGG	5 cut(s)	288, 790, 892, 913, 1043
EcoRV	GATATC	1 cut(s)	778
EcoT14I	CCWWGG	4 cut(s)	226, 263, 573, 846
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	4 cut(s)	226, 263, 573, 846
FaeI	CATG	3 cut(s)	267, 710, 980
FaqI	GGGAC	1 cut(s)	861
FatI	CATG	3 cut(s)	263, 706, 976
FauI	CCCGC	1 cut(s)	612
Fnu4HI	GCNGC	5 cut(s)	17, 105, 246, 354, 1037
FokI	GGATG	3 cut(s)	121, 137, 588
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	5 cut(s)	17, 105, 246, 354, 1037
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	5 cut(s)	17, 105, 246, 354, 1037
GsaI	CCCAGC	1 cut(s)	16
GsuI	CTGGAG	3 cut(s)	162, 813, 822
HaeIII	GGCC	7 cut(s)	107, 245, 340, 623, 718, 918, 1043
HapII	CCGG	2 cut(s)	240, 676
Hin1II	CATG	3 cut(s)	267, 710, 980
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	4 cut(s)	259, 402, 589, 1064
HpaI	GTTAAC	1 cut(s)	562
HpaII	CCGG	2 cut(s)	240, 676
HphI	GGTGA	2 cut(s)	278, 304
Hpy166II	GTNNAC	2 cut(s)	500, 562
Hpy188I	TCNGA	4 cut(s)	156, 401, 628, 925
Hpy188III	TCNNGA	4 cut(s)	386, 471, 676, 977
Hpy8I	GTNNAC	2 cut(s)	500, 562
HpyAV	CCTTC	4 cut(s)	329, 387, 481, 623
HpyCH4III	ACNGT	2 cut(s)	348, 497
HpyCH4V	TGCA	9 cut(s)	253, 301, 353, 413, 508, 614, 839, 868, 971
HpyF10VI	GCNNNNNNNGC	6 cut(s)	13, 277, 620, 794, 857, 1045
HpyF3I	CTNAG	1 cut(s)	856
Hsp92II	CATG	3 cut(s)	267, 710, 980
Kpn2I	TCCGGA	1 cut(s)	675
KspAI	GTTAAC	1 cut(s)	562
KspI	CCGCGG	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	920, 1021
LmnI	GCTCC	6 cut(s)	268, 736, 793, 794, 865, 1053
Lsp1109I	GCAGC	3 cut(s)	28, 365, 1048
LweI	GCATC	4 cut(s)	16, 115, 143, 958
MabI	ACCWGGT	1 cut(s)	288
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	4 cut(s)	191, 217, 284, 292
MalI	GATC	2 cut(s)	922, 1023
MboI	GATC	2 cut(s)	920, 1021
MboII	GAAGA	6 cut(s)	39, 89, 341, 344, 646, 911
MhlI	GDGCHC	1 cut(s)	342
MlsI	TGGCCA	1 cut(s)	1043
MluCI	AATT	2 cut(s)	118, 1076
MluNI	TGGCCA	1 cut(s)	1043
MlyI	GAGTC	2 cut(s)	268, 411
MmeI	TCCRAC	1 cut(s)	758
MnlI	CCTC	8 cut(s)	105, 303, 529, 634, 656, 676, 873, 956
Mox20I	TGGCCA	1 cut(s)	1043
MroI	TCCGGA	1 cut(s)	675
MscI	TGGCCA	1 cut(s)	1043
MseI	TTAA	5 cut(s)	87, 147, 305, 455, 561
MslI	CAYNNNNRTG	1 cut(s)	426
Msp20I	TGGCCA	1 cut(s)	1043
MspA1I	CMGCKG	3 cut(s)	140, 248, 1039
MspI	CCGG	2 cut(s)	240, 676
MspR9I	CCNGG	6 cut(s)	241, 290, 792, 894, 915, 1045
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	5 cut(s)	290, 792, 894, 915, 1045
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	6 cut(s)	13, 277, 620, 794, 857, 1045
NciI	CCSGG	1 cut(s)	241
NcoI	CCATGG	1 cut(s)	263
NdeII	GATC	2 cut(s)	920, 1021
NlaIII	CATG	3 cut(s)	267, 710, 980
NlaIV	GGNNCC	5 cut(s)	162, 244, 340, 944, 1049
NmuCI	GTSAC	3 cut(s)	191, 284, 292
PagI	TCATGA	1 cut(s)	976
PctI	GAATGC	1 cut(s)	616
PfeI	GAWTC	2 cut(s)	589, 1064
PfoI	TCCNGGA	1 cut(s)	790
PkrI	GCNGC	5 cut(s)	18, 106, 247, 355, 1038
PleI	GAGTC	2 cut(s)	267, 410
PpsI	GAGTC	2 cut(s)	267, 410
Psp6I	CCWGG	5 cut(s)	288, 790, 892, 913, 1043
PspFI	CCCAGC	1 cut(s)	12
PspGI	CCWGG	5 cut(s)	288, 790, 892, 913, 1043
PspN4I	GGNNCC	5 cut(s)	162, 244, 340, 944, 1049
PspOMI	GGGCCC	1 cut(s)	338
PspPI	GGNCC	6 cut(s)	160, 243, 338, 339, 446, 621
PstI	CTGCAG	1 cut(s)	870
PvuII	CAGCTG	1 cut(s)	1039
RseI	CAYNNNNRTG	1 cut(s)	426
SacII	CCGCGG	1 cut(s)	249
SaqAI	TTAA	5 cut(s)	87, 147, 305, 455, 561
SatI	GCNGC	5 cut(s)	17, 105, 246, 354, 1037
Sau3AI	GATC	2 cut(s)	920, 1021
Sau96I	GGNCC	6 cut(s)	160, 243, 338, 339, 446, 621
SchI	GAGTC	2 cut(s)	268, 411
ScrFI	CCNGG	6 cut(s)	241, 290, 792, 894, 915, 1045
SduI	GDGCHC	1 cut(s)	342
SexAI	ACCWGGT	1 cut(s)	288
SfaNI	GCATC	4 cut(s)	16, 115, 143, 958
SfcI	CTRYAG	5 cut(s)	519, 808, 866, 960, 1029
Sfr303I	CCGCGG	1 cut(s)	249
SgrBI	CCGCGG	1 cut(s)	249
SinI	GGWCC	2 cut(s)	160, 446
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	2 cut(s)	118, 1076
SsiI	CCGC	5 cut(s)	104, 138, 246, 248, 619
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	6 cut(s)	239, 288, 790, 892, 913, 1043
StyI	CCWWGG	4 cut(s)	226, 263, 573, 846
TaaI	ACNGT	2 cut(s)	348, 497
TaqI	TCGA	2 cut(s)	360, 1024
TasI	AATT	2 cut(s)	118, 1076
TauI	GCSGC	2 cut(s)	107, 248
TfiI	GAWTC	2 cut(s)	589, 1064
Tru1I	TTAA	5 cut(s)	87, 147, 305, 455, 561
Tru9I	TTAA	5 cut(s)	87, 147, 305, 455, 561
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	3 cut(s)	191, 284, 292
TseI	GCWGC	3 cut(s)	16, 353, 1036
Tsp45I	GTSAC	3 cut(s)	191, 284, 292
TspDTI	ATGAA	2 cut(s)	408, 918
TspRI	CASTG	1 cut(s)	612
VpaK11BI	GGWCC	2 cut(s)	160, 446
XapI	RAATTY	2 cut(s)	118, 1076
XmaJI	CCTAGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.