Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005100

Physical Location & Seq

Genomic Coordinates Reverse (-)

82627408 .. 82632106

Gene Structure 4699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG593400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCTCATTTGCTACAGGTATGCAACAGAACATAGATGTGGAGTGGTTGTAAAAGGACCAAGTTTAAGTGGAAACATATCAGGAACAGACCCTTTGAAGGACAACCGTTTACTTTTGCAAGCTGAAGCTCTAGATGGTAGTGACGAGGCACGGCATACAGCTAAAGTTGTTAACGAGTTATCCAAGGAAATATCAAAGATTCTCATTGCTCATCCACTGAATGCAAAGCGGGCCTCTGAAGGGAAGAACATAGCTAATGTTGTTCTTTTACGAGGCTGTGGTATCCGGATTGAGGTTTCTCCGTTTGCAAAGAAACATGGGTTATGGCCTTGTATGGTAGCTCCAACAAAAATCATTGCTGGATTGGGCTTATCTCTTGGCATTGATATCCTGGAAGCTCCTGGAGCAACTGGAGACTGCAGAACACTTCTAACTTCCAAAGCAACTGCAATAGCCAAGGCACTCTCGGCTCCTCTGCAGTCTTGCCCCAATGTGTTTGTGCCAGGGGAAGATGAACACAAACCAGGCCGATCAGATGGCTATGATTTTGGGTTCCTCCATATAAAGGCTATAGATGATGCAGGTCATGACAAGGCAACCATTTTCAAAGTCAAAGGATTGGAAGCTGTGGATCGAGCTATAGGGCAGCTGGCCAGGCTCCTTTGGGAGACTGAATCGACTGGAAAATTTCAGTACTTTCTTAGTGTTACAGGAGACCACTCTACCCCAGTTGAATATGGAGACCACAGCTTTGAGCCAGTTCCGTTCACAATATGTTCATTGAAAGATTTTGTGGGCGTTGTAGGTGTGGAAACGATTTTGGGTGGTTCGCTTGATCCATTTCCTCTTCCAACCGTAAAAGAGTGTGAATATCCAACAGAACATGTCGAGATGGAACAGGAGCCCACCAAACAGCCTCGAGCTTTCAGCGGTGATTCAGTTTGTGAGTTTGATGAGATAGTGGCAGCAAGGGGATGTCTTGGACGTTTTTCTGGCGGTGAGATGATGGGAGTAATAAAGAATTTCCTGGAGCTAGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metalloenzyme PhosphMutase

Protein Analysis

347

Amino Acids

37.38

Weight (kDa)

5.53

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhosphMutase	PF10143	6 - 74	7.5e-09	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Metalloenzyme	PF01676	179 - 260	2.2e-14	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30841 AT3G30841 AT4G09520
fragaria_vesca	FvH4_5g30870 FvH4_5g30870 FvH4_6g45710
malus_domestica	MD17G1071600.v1.1
prunus_persica	Prupe.3G243300_v2.0.a1 Prupe.3G243300_v2.0.a1
pyrus_communis	pycom17g07100
rosa_chinensis	RchiOBHm_Chr2g0163861 RchiOBHm_Chr5g0053071
rosa_laevigata	RLG00000021422 RLG00000034774
rosa_multiflora	Rmu_co7996526.1_g000001 Rmu_sc0001181.1_g000008 Rmu_sc0005917.1_g000001 Rmu_sc0037762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028940 Rroxscaffold_2G00086940
rosa_rugosa	Rorug02G0505000 Rorug05G0268300
rosa_samantha	Rh2AG573100 Rh2BG583800 Rh2CG554800 Rh2DG593400 Rh5AG340800 Rh5BG351300 Rh5DG367700
rosa_wichuraiana	Rw2G047390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	572
AccIII	TCCGGA	1 cut(s)	285
AciI	CCGC	3 cut(s)	229, 930, 996
AclWI	GGATC	2 cut(s)	639, 830
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	2 cut(s)	686, 1021
AcuI	CTGAAG	2 cut(s)	144, 258
AfaI	GTAC	1 cut(s)	695
AfiI	CCNNNNNNNGG	4 cut(s)	97, 240, 292, 565
AflIII	ACRYGT	1 cut(s)	883
AgsI	TTSAA	4 cut(s)	97, 607, 734, 784
AjnI	CCWGG	6 cut(s)	390, 400, 502, 523, 653, 1026
Alw26I	GTCTC	4 cut(s)	408, 662, 708, 735
AlwI	GGATC	2 cut(s)	639, 830
Ama87I	CYCGRG	1 cut(s)	918
Aor13HI	TCCGGA	1 cut(s)	285
AoxI	GGCC	4 cut(s)	231, 326, 526, 651
ApeKI	GCWGC	2 cut(s)	646, 965
ApoI	RAATTY	2 cut(s)	686, 1021
ArsI	GACNNNNNNTTYG	2 cut(s)	734, 766
AspS9I	GGNCC	2 cut(s)	56, 231
AsuHPI	GGTGA	2 cut(s)	944, 1010
AvaI	CYCGRG	1 cut(s)	918
AvaII	GGWCC	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	653
BanII	GRGCYC	1 cut(s)	906
BbvI	GCAGC	2 cut(s)	658, 977
BccI	CCATC	4 cut(s)	128, 530, 886, 1000
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	6 cut(s)	392, 402, 504, 525, 655, 1028
BciVI	GTATCC	1 cut(s)	293
BcoDI	GTCTC	4 cut(s)	408, 662, 708, 735
BfaI	CTAG	2 cut(s)	131, 1034
BfmI	CTRYAG	5 cut(s)	13, 418, 476, 570, 639
BfuAI	ACCTGC	1 cut(s)	572
BfuI	GTATCC	1 cut(s)	293
BisI	GCNGC	2 cut(s)	647, 966
BlsI	GCNGC	2 cut(s)	648, 967
BmcAI	AGTACT	1 cut(s)	695
Bme1390I	CCNGG	6 cut(s)	392, 402, 504, 525, 655, 1028
Bme18I	GGWCC	1 cut(s)	56
BmeT110I	CYCGRG	1 cut(s)	918
BmgT120I	GGNCC	2 cut(s)	56, 231
BmiI	GGNNCC	4 cut(s)	471, 554, 659, 903
BmrFI	CCNGG	6 cut(s)	392, 402, 504, 525, 655, 1028
BmrI	ACTGGG	1 cut(s)	722
BmsI	GCATC	1 cut(s)	568
BmuI	ACTGGG	1 cut(s)	722
BpmI	CTGGAG	2 cut(s)	423, 432
BsaI	GGTCTC	2 cut(s)	708, 735
BsaJI	CCNNGG	3 cut(s)	183, 456, 503
BsaWI	WCCGGW	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 240, 292, 565
Bse1I	ACTGG	4 cut(s)	415, 685, 728, 758
Bse3DI	GCAATG	2 cut(s)	204, 354
BseAI	TCCGGA	1 cut(s)	285
BseBI	CCWGG	6 cut(s)	392, 402, 504, 525, 655, 1028
BseDI	CCNNGG	3 cut(s)	183, 456, 503
BseGI	GGATG	2 cut(s)	211, 980
BseLI	CCNNNNNNNGG	4 cut(s)	97, 240, 292, 565
BseMI	GCAATG	2 cut(s)	204, 354
BseNI	ACTGG	4 cut(s)	415, 685, 728, 758
BseRI	GAGGAG	1 cut(s)	462
BseXI	GCAGC	2 cut(s)	658, 977
BshFI	GGCC	4 cut(s)	233, 328, 528, 653
BsiHKCI	CYCGRG	1 cut(s)	918
BsiSI	CCGG	1 cut(s)	286
BslI	CCNNNNNNNGG	4 cut(s)	97, 240, 292, 565
BsmAI	GTCTC	4 cut(s)	408, 662, 708, 735
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	4 cut(s)	233, 328, 528, 653
Bso31I	GGTCTC	2 cut(s)	708, 735
BsoBI	CYCGRG	1 cut(s)	918
Bsp1286I	GDGCHC	1 cut(s)	906
Bsp13I	TCCGGA	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	530, 631, 835
BspACI	CCGC	3 cut(s)	229, 930, 996
BspANI	GGCC	4 cut(s)	233, 328, 528, 653
BspEI	TCCGGA	1 cut(s)	285
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	4 cut(s)	471, 554, 659, 903
BspMAI	CTGCAG	2 cut(s)	422, 480
BspMI	ACCTGC	1 cut(s)	572
BspPI	GGATC	2 cut(s)	639, 830
BspTNI	GGTCTC	2 cut(s)	708, 735
BsrDI	GCAATG	2 cut(s)	204, 354
BsrI	ACTGG	4 cut(s)	415, 685, 728, 758
BssECI	CCNNGG	3 cut(s)	183, 456, 503
BssMI	GATC	3 cut(s)	530, 631, 835
BssT1I	CCWWGG	2 cut(s)	183, 456
Bst2UI	CCWGG	6 cut(s)	392, 402, 504, 525, 655, 1028
Bst4CI	ACNGT	2 cut(s)	107, 856
Bst6I	CTCTTC	1 cut(s)	852
BstC8I	GCNNGC	3 cut(s)	120, 231, 651
BstDEI	CTNAG	1 cut(s)	701
BstF5I	GGATG	2 cut(s)	211, 980
BstKTI	GATC	3 cut(s)	533, 634, 838
BstMAI	GTCTC	4 cut(s)	408, 662, 708, 735
BstMBI	GATC	3 cut(s)	530, 631, 835
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 404, 467, 655
BstNI	CCWGG	6 cut(s)	392, 402, 504, 525, 655, 1028
BstNSI	RCATGY	1 cut(s)	887
BstSCI	CCNGG	6 cut(s)	390, 400, 502, 523, 653, 1026
BstSFI	CTRYAG	5 cut(s)	13, 418, 476, 570, 639
BstV1I	GCAGC	2 cut(s)	658, 977
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	4 cut(s)	233, 328, 528, 653
BtsCI	GGATG	2 cut(s)	211, 980
BtsIMutI	CAGTG	1 cut(s)	215
BveI	ACCTGC	1 cut(s)	572
Cac8I	GCNNGC	3 cut(s)	120, 231, 651
CciI	TCATGA	1 cut(s)	586
Cfr13I	GGNCC	2 cut(s)	56, 231
Csp6I	GTAC	1 cut(s)	694
CviAII	CATG	4 cut(s)	317, 587, 884, 1041
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	1 cut(s)	701
DpnI	GATC	3 cut(s)	532, 633, 837
DpnII	GATC	3 cut(s)	530, 631, 835
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	1 cut(s)	852
EarI	CTCTTC	1 cut(s)	852
Eco130I	CCWWGG	2 cut(s)	183, 456
Eco24I	GRGCYC	1 cut(s)	906
Eco31I	GGTCTC	2 cut(s)	708, 735
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	2 cut(s)	144, 258
Eco88I	CYCGRG	1 cut(s)	918
EcoRII	CCWGG	6 cut(s)	390, 400, 502, 523, 653, 1026
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	183, 456
EcoT38I	GRGCYC	1 cut(s)	906
ErhI	CCWWGG	2 cut(s)	183, 456
FaeI	CATG	4 cut(s)	320, 590, 887, 1044
FatI	CATG	4 cut(s)	316, 586, 883, 1040
FauI	CCCGC	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	647, 966
FokI	GGATG	2 cut(s)	198, 987
FriOI	GRGCYC	1 cut(s)	906
Fsp4HI	GCNGC	2 cut(s)	647, 966
FspBI	CTAG	2 cut(s)	131, 1034
GluI	GCNGC	2 cut(s)	647, 966
GsuI	CTGGAG	2 cut(s)	423, 432
HaeIII	GGCC	4 cut(s)	233, 328, 528, 653
HapII	CCGG	1 cut(s)	286
Hin1II	CATG	4 cut(s)	320, 590, 887, 1044
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	3 cut(s)	199, 674, 935
HpaI	GTTAAC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	2 cut(s)	944, 1010
Hpy166II	GTNNAC	3 cut(s)	110, 172, 768
Hpy188I	TCNGA	2 cut(s)	238, 535
Hpy188III	TCNNGA	5 cut(s)	81, 131, 286, 587, 889
Hpy8I	GTNNAC	3 cut(s)	110, 172, 768
HpyAV	CCTTC	2 cut(s)	91, 233
HpyCH4III	ACNGT	2 cut(s)	107, 856
HpyCH4IV	ACGT	1 cut(s)	985
HpyCH4V	TGCA	8 cut(s)	23, 118, 224, 308, 420, 449, 478, 581
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 404, 467, 655
HpyF3I	CTNAG	1 cut(s)	701
HpySE526I	ACGT	1 cut(s)	985
Hsp92II	CATG	4 cut(s)	320, 590, 887, 1044
Kpn2I	TCCGGA	1 cut(s)	285
KspAI	GTTAAC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	530, 631, 835
LmnI	GCTCC	7 cut(s)	346, 403, 404, 475, 663, 901, 1030
Lsp1109I	GCAGC	2 cut(s)	658, 977
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	2 cut(s)	131, 1034
MaeII	ACGT	1 cut(s)	985
MaeIII	GTNAC	2 cut(s)	140, 706
MalI	GATC	3 cut(s)	532, 633, 837
MboI	GATC	3 cut(s)	530, 631, 835
MboII	GAAGA	3 cut(s)	256, 521, 839
MhlI	GDGCHC	1 cut(s)	906
MlsI	TGGCCA	1 cut(s)	653
MluCI	AATT	2 cut(s)	686, 1021
MluNI	TGGCCA	1 cut(s)	653
MmeI	TCCRAC	3 cut(s)	368, 875, 899
MnlI	CCTC	8 cut(s)	139, 244, 266, 286, 483, 566, 855, 927
Mox20I	TGGCCA	1 cut(s)	653
MroI	TCCGGA	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	653
MseI	TTAA	2 cut(s)	65, 171
MslI	CAYNNNNRTG	1 cut(s)	36
Msp20I	TGGCCA	1 cut(s)	653
MspA1I	CMGCKG	2 cut(s)	649, 930
MspI	CCGG	1 cut(s)	286
MspR9I	CCNGG	6 cut(s)	392, 402, 504, 525, 655, 1028
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	6 cut(s)	392, 402, 504, 525, 655, 1028
MwoI	GCNNNNNNNGC	4 cut(s)	230, 404, 467, 655
NdeII	GATC	3 cut(s)	530, 631, 835
NlaIII	CATG	4 cut(s)	320, 590, 887, 1044
NlaIV	GGNNCC	4 cut(s)	471, 554, 659, 903
NmeAIII	GCCGAG	1 cut(s)	446
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	1 cut(s)	887
PaeR7I	CTCGAG	1 cut(s)	918
PagI	TCATGA	1 cut(s)	586
PciI	ACATGT	1 cut(s)	883
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	3 cut(s)	199, 674, 935
PfoI	TCCNGGA	3 cut(s)	390, 400, 1026
PkrI	GCNGC	2 cut(s)	648, 967
PscI	ACATGT	1 cut(s)	883
Psp6I	CCWGG	6 cut(s)	390, 400, 502, 523, 653, 1026
PspGI	CCWGG	6 cut(s)	390, 400, 502, 523, 653, 1026
PspN4I	GGNNCC	4 cut(s)	471, 554, 659, 903
PspPI	GGNCC	2 cut(s)	56, 231
PspXI	VCTCGAGB	1 cut(s)	918
PstI	CTGCAG	2 cut(s)	422, 480
PvuII	CAGCTG	1 cut(s)	649
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	65, 171
SatI	GCNGC	2 cut(s)	647, 966
Sau3AI	GATC	3 cut(s)	530, 631, 835
Sau96I	GGNCC	2 cut(s)	56, 231
ScaI	AGTACT	1 cut(s)	695
ScrFI	CCNGG	6 cut(s)	392, 402, 504, 525, 655, 1028
SduI	GDGCHC	1 cut(s)	906
SfaNI	GCATC	1 cut(s)	568
SfcI	CTRYAG	5 cut(s)	13, 418, 476, 570, 639
Sfr274I	CTCGAG	1 cut(s)	918
SinI	GGWCC	1 cut(s)	56
SlaI	CTCGAG	1 cut(s)	918
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	918
SmoI	CTYRAG	1 cut(s)	918
Sse9I	AATT	2 cut(s)	686, 1021
SsiI	CCGC	3 cut(s)	229, 930, 996
SspMI	CTAG	2 cut(s)	131, 1034
StyD4I	CCNGG	6 cut(s)	390, 400, 502, 523, 653, 1026
StyI	CCWWGG	2 cut(s)	183, 456
TaaI	ACNGT	2 cut(s)	107, 856
TaiI	ACGT	1 cut(s)	988
TaqI	TCGA	4 cut(s)	634, 677, 888, 919
TasI	AATT	2 cut(s)	686, 1021
TatI	WGTACW	1 cut(s)	693
TfiI	GAWTC	3 cut(s)	199, 674, 935
Tru1I	TTAA	2 cut(s)	65, 171
Tru9I	TTAA	2 cut(s)	65, 171
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	646, 965
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	528, 768
TspGWI	ACGGA	2 cut(s)	291, 753
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	2 cut(s)	686, 1021
XbaI	TCTAGA	1 cut(s)	130
XceI	RCATGY	1 cut(s)	887
XhoI	CTCGAG	1 cut(s)	918
XspI	CTAG	2 cut(s)	131, 1034
ZrmI	AGTACT	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.