Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005100

Physical Location & Seq

Genomic Coordinates Reverse (-)

54273620 .. 54279603

Gene Structure 5984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034774

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGGGCATCCCCAGCAGCCAAAAAGAAGAGTGGCATTTTTGTTGATTGATGGTGTGGGCGATGTGTCAGTACCAAAGTTGGGATTTAAGACTCCTCTTCAGAAGGCCAAACTACCGAATTTAGATGCCATAGCATCCGCTGGAGTTTATGGTCTGATGGACCTTGTTGAAGTTGGTCTGGGTTGTGGAAGTGACACAGCCCATCTTTCTCTAATGGGTTACAACCCTAGGGTATATTACCGGGGCCACGGTGCATTTGTGTCCATGGGAGCAAGGTTGGCAATGTCACCAGGTGACATTGCATTTAAGTCTAATTTTGCAATACTGGATGAAAAAACTGGAATAATTATCAGTAGGAGGGGTGATAGACACTTTGAAAAAGAAGGGCCCATACTGTGTGCAGCACTTGATGGAATGAAGTTGCCATCTTTCCCGAATATGAGGTATGCAACAAAACATAGATGTGGAGTGGTTGTAAAAGGACCAAGTTTAAGTGGAAACATATCACGAACAGACCCTGATGAGGCACAGCTTACAGTTAAAGTTGTTAACGAGTTATCCAAGGAAATATCAAAGATTTTCATTCCTCATCCACTAACTGCAATGCGGGTTTCTCCATTTGCAAAGAAACATGGGTTATGGCCTTGTATGGTAGCTCCAACAAAAATCATTGCTGGATTGGGCTTATCTCTTGGCATTGATATCCTGGAAGCTCCTGGAGCAACTAGAGACTACAGAACACTTCTAACTTCCAAAGCAACTGCAATAGCCAAGGCACTCTCAGCTCCTCTGCAGTCTTGCCCCAATGTGTTTGTGCCAGGGGAAGATGAACACAAATCAGGCCGATCAGATGGCTATGATTTTGGGTTCCTCCACATAAAGGCTATAGATGATGCAGGGGACTACTCTACCCCTGTTGAATATGGAGACCACAGCTTTGAGCCAGTCCCATTCACAATATGTTCATTTAAAGATTTTGTGGGTGCTGTAGGTGTGGAAACGATTTTGGGTGGTTCGCTTGATCCATTTCCTCTTCCATCCGTAAAAGAGGGTGAATATCCAACAGATGTGGAGATGGAACAGGAGCCCACCAAACAGCCTCCAGCTTTCAACGGTGATTCGGTTTGTGAGTTTAATGAGATAGCGGCAGCAAGGGGATGTCTTGGACGTTTTTCTGGTGGTGAGATGATGGGAGTAATAAAGAATTTCCTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metalloenzyme PhosphMutase

Protein Analysis

406

Amino Acids

43.49

Weight (kDa)

6.22

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	10 - 232	5.1e-09	Metalloenzyme superfamily
PhosphMutase	PF10143	45 - 186	1.2e-33	2,3-bisphosphoglycerate-independent phosphoglycerate mutase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30841 AT3G30841 AT4G09520
fragaria_vesca	FvH4_5g30870 FvH4_5g30870 FvH4_6g45710
malus_domestica	MD17G1071600.v1.1
prunus_persica	Prupe.3G243300_v2.0.a1 Prupe.3G243300_v2.0.a1
pyrus_communis	pycom17g07100
rosa_chinensis	RchiOBHm_Chr2g0163861 RchiOBHm_Chr5g0053071
rosa_laevigata	RLG00000021422 RLG00000034774
rosa_multiflora	Rmu_co7996526.1_g000001 Rmu_sc0001181.1_g000008 Rmu_sc0005917.1_g000001 Rmu_sc0037762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028940 Rroxscaffold_2G00086940
rosa_rugosa	Rorug02G0505000 Rorug05G0268300
rosa_samantha	Rh2AG573100 Rh2BG583800 Rh2CG554800 Rh2DG593400 Rh5AG340800 Rh5BG351300 Rh5DG367700
rosa_wichuraiana	Rw2G047390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	138, 607, 1145
AclWI	GGATC	1 cut(s)	1016
AcsI	RAATTY	2 cut(s)	118, 1204
AcuI	CTGAAG	1 cut(s)	83
AdeI	CACNNNGTG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	3 cut(s)	80, 523, 880
AgsI	TTSAA	4 cut(s)	170, 377, 920, 1111
AjnI	CCWGG	5 cut(s)	289, 705, 715, 817, 1209
AluBI	AGCT	6 cut(s)	532, 656, 713, 785, 936, 1106
AluI	AGCT	6 cut(s)	532, 656, 713, 785, 936, 1106
Alw26I	GTCTC	2 cut(s)	723, 921
AlwI	GGATC	1 cut(s)	1016
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	5 cut(s)	105, 244, 386, 641, 841
ApaI	GGGCCC	1 cut(s)	390
ApeKI	GCWGC	3 cut(s)	16, 401, 1148
ApoI	RAATTY	2 cut(s)	118, 1204
ArsI	GACNNNNNNTTYG	2 cut(s)	920, 952
AspA2I	CCTAGG	1 cut(s)	227
AspS9I	GGNCC	5 cut(s)	160, 244, 386, 387, 482
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	6 cut(s)	279, 305, 374, 1064, 1127, 1193
AvaII	GGWCC	2 cut(s)	160, 482
AvrII	CCTAGG	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	390
BanII	GRGCYC	2 cut(s)	390, 1089
BarI	GAAGNNNNNNTAC	2 cut(s)	375, 407
BbvI	GCAGC	3 cut(s)	28, 413, 1160
BccI	CCATC	9 cut(s)	44, 151, 210, 404, 433, 845, 1045, 1069, 1183
BciT130I	CCWGG	5 cut(s)	291, 707, 717, 819, 1211
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	723, 921
BfaI	CTAG	3 cut(s)	228, 726, 1216
BfmI	CTRYAG	4 cut(s)	733, 791, 885, 987
BisI	GCNGC	4 cut(s)	17, 402, 1146, 1149
BlnI	CCTAGG	1 cut(s)	227
BlsI	GCNGC	4 cut(s)	18, 403, 1147, 1150
Bme1390I	CCNGG	6 cut(s)	242, 291, 707, 717, 819, 1211
Bme18I	GGWCC	2 cut(s)	160, 482
BmgT120I	GGNCC	5 cut(s)	160, 244, 386, 387, 482
BmiI	GGNNCC	4 cut(s)	245, 388, 869, 1086
BmrFI	CCNGG	6 cut(s)	242, 291, 707, 717, 819, 1211
BmsI	GCATC	4 cut(s)	16, 115, 143, 883
BpmI	CTGGAG	3 cut(s)	162, 738, 1086
BpuMI	CCSGG	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	921
BsaJI	CCNNGG	7 cut(s)	227, 241, 247, 264, 561, 771, 818
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 523, 880
Bse1I	ACTGG	3 cut(s)	330, 343, 944
Bse3DI	GCAATG	4 cut(s)	288, 297, 609, 669
BseBI	CCWGG	5 cut(s)	291, 707, 717, 819, 1211
BseDI	CCNNGG	7 cut(s)	227, 241, 247, 264, 561, 771, 818
BseGI	GGATG	6 cut(s)	7, 134, 334, 589, 1037, 1163
BseLI	CCNNNNNNNGG	3 cut(s)	80, 523, 880
BseMI	GCAATG	4 cut(s)	288, 297, 609, 669
BseMII	CTCAG	1 cut(s)	795
BseNI	ACTGG	3 cut(s)	330, 343, 944
BseRI	GAGGAG	2 cut(s)	84, 777
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	3 cut(s)	28, 413, 1160
BseYI	CCCAGC	1 cut(s)	12
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	5 cut(s)	107, 246, 388, 643, 843
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	2 cut(s)	914, 932
BslI	CCNNNNNNNGG	3 cut(s)	80, 523, 880
BsmAI	GTCTC	2 cut(s)	723, 921
BsmFI	GGGAC	2 cut(s)	914, 932
BsnI	GGCC	5 cut(s)	107, 246, 388, 643, 843
Bso31I	GGTCTC	1 cut(s)	921
Bsp120I	GGGCCC	1 cut(s)	386
Bsp1286I	GDGCHC	2 cut(s)	390, 1089
Bsp143I	GATC	2 cut(s)	845, 1021
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	138, 607, 1145
BspANI	GGCC	5 cut(s)	107, 246, 388, 643, 843
BspCNI	CTCAG	1 cut(s)	794
BspLI	GGNNCC	4 cut(s)	245, 388, 869, 1086
BspMAI	CTGCAG	1 cut(s)	795
BspPI	GGATC	1 cut(s)	1016
BspTNI	GGTCTC	1 cut(s)	921
BsrDI	GCAATG	4 cut(s)	288, 297, 609, 669
BsrI	ACTGG	3 cut(s)	330, 343, 944
BssECI	CCNNGG	7 cut(s)	227, 241, 247, 264, 561, 771, 818
BssMI	GATC	2 cut(s)	845, 1021
BssT1I	CCWWGG	4 cut(s)	227, 264, 561, 771
Bst2UI	CCWGG	5 cut(s)	291, 707, 717, 819, 1211
Bst4CI	ACNGT	4 cut(s)	251, 396, 538, 1115
Bst6I	CTCTTC	3 cut(s)	22, 102, 1038
BstDEI	CTNAG	1 cut(s)	781
BstDSI	CCRYGG	2 cut(s)	247, 264
BstF5I	GGATG	6 cut(s)	7, 134, 334, 589, 1037, 1163
BstKTI	GATC	2 cut(s)	848, 1024
BstMAI	GTCTC	2 cut(s)	723, 921
BstMBI	GATC	2 cut(s)	845, 1021
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 278, 719, 782
BstNI	CCWGG	5 cut(s)	291, 707, 717, 819, 1211
BstSCI	CCNGG	6 cut(s)	240, 289, 705, 715, 817, 1209
BstSFI	CTRYAG	4 cut(s)	733, 791, 885, 987
BstSLI	GKGCMC	1 cut(s)	390
BstV1I	GCAGC	3 cut(s)	28, 413, 1160
BsuRI	GGCC	5 cut(s)	107, 246, 388, 643, 843
BtgI	CCRYGG	2 cut(s)	247, 264
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	6 cut(s)	7, 134, 334, 589, 1037, 1163
CaiI	CAGNNNCTG	1 cut(s)	518
Cfr13I	GGNCC	5 cut(s)	160, 244, 386, 387, 482
CsiI	ACCWGGT	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	71
CspCI	CAANNNNNGTGG	2 cut(s)	1050, 1085
CviAII	CATG	2 cut(s)	265, 632
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	1 cut(s)	781
DpnI	GATC	2 cut(s)	847, 1023
DpnII	GATC	2 cut(s)	845, 1021
DraI	TTTAAA	1 cut(s)	970
DraIII	CACNNNGTG	1 cut(s)	293
Eam1104I	CTCTTC	3 cut(s)	22, 102, 1038
EarI	CTCTTC	3 cut(s)	22, 102, 1038
Eco130I	CCWWGG	4 cut(s)	227, 264, 561, 771
Eco24I	GRGCYC	2 cut(s)	390, 1089
Eco31I	GGTCTC	1 cut(s)	921
Eco32I	GATATC	1 cut(s)	703
Eco47I	GGWCC	2 cut(s)	160, 482
Eco57I	CTGAAG	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	386
EcoRII	CCWGG	5 cut(s)	289, 705, 715, 817, 1209
EcoRV	GATATC	1 cut(s)	703
EcoT14I	CCWWGG	4 cut(s)	227, 264, 561, 771
EcoT38I	GRGCYC	2 cut(s)	390, 1089
ErhI	CCWWGG	4 cut(s)	227, 264, 561, 771
FaeI	CATG	2 cut(s)	268, 635
FaqI	GGGAC	2 cut(s)	914, 932
FatI	CATG	2 cut(s)	264, 631
FauI	CCCGC	1 cut(s)	600
Fnu4HI	GCNGC	4 cut(s)	17, 402, 1146, 1149
FokI	GGATG	5 cut(s)	121, 341, 576, 1024, 1170
FriOI	GRGCYC	2 cut(s)	390, 1089
Fsp4HI	GCNGC	4 cut(s)	17, 402, 1146, 1149
FspBI	CTAG	3 cut(s)	228, 726, 1216
GluI	GCNGC	4 cut(s)	17, 402, 1146, 1149
GsaI	CCCAGC	1 cut(s)	16
GsuI	CTGGAG	3 cut(s)	162, 738, 1086
HaeIII	GGCC	5 cut(s)	107, 246, 388, 643, 843
HapII	CCGG	1 cut(s)	241
Hin1II	CATG	2 cut(s)	268, 635
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	2 cut(s)	91, 1118
HpaI	GTTAAC	1 cut(s)	550
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	6 cut(s)	279, 305, 374, 1064, 1127, 1193
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	3 cut(s)	102, 156, 850
Hpy188III	TCNNGA	2 cut(s)	433, 507
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	2 cut(s)	97, 377
HpyCH4III	ACNGT	4 cut(s)	251, 396, 538, 1115
HpyCH4IV	ACGT	1 cut(s)	1168
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 278, 719, 782
HpyF3I	CTNAG	1 cut(s)	781
HpySE526I	ACGT	1 cut(s)	1168
Hsp92II	CATG	2 cut(s)	268, 635
KspAI	GTTAAC	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	845, 1021
LmnI	GCTCC	6 cut(s)	269, 661, 718, 719, 790, 1084
Lsp1109I	GCAGC	3 cut(s)	28, 413, 1160
LweI	GCATC	4 cut(s)	16, 115, 143, 883
MabI	ACCWGGT	1 cut(s)	289
MaeI	CTAG	3 cut(s)	228, 726, 1216
MaeII	ACGT	1 cut(s)	1168
MaeIII	GTNAC	4 cut(s)	191, 218, 285, 293
MalI	GATC	2 cut(s)	847, 1023
MboI	GATC	2 cut(s)	845, 1021
MboII	GAAGA	4 cut(s)	39, 89, 836, 1025
MhlI	GDGCHC	2 cut(s)	390, 1089
MluCI	AATT	4 cut(s)	118, 313, 345, 1204
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	2 cut(s)	683, 1085
MseI	TTAA	7 cut(s)	87, 306, 491, 540, 549, 969, 1134
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	6 cut(s)	242, 291, 707, 717, 819, 1211
MvaI	CCWGG	5 cut(s)	291, 707, 717, 819, 1211
MwoI	GCNNNNNNNGC	4 cut(s)	13, 278, 719, 782
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	845, 1021
NlaIII	CATG	2 cut(s)	268, 635
NlaIV	GGNNCC	4 cut(s)	245, 388, 869, 1086
NmuCI	GTSAC	3 cut(s)	191, 285, 293
PfeI	GAWTC	1 cut(s)	1118
PfoI	TCCNGGA	3 cut(s)	705, 715, 1209
PkrI	GCNGC	4 cut(s)	18, 403, 1147, 1150
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp6I	CCWGG	5 cut(s)	289, 705, 715, 817, 1209
PspFI	CCCAGC	1 cut(s)	12
PspGI	CCWGG	5 cut(s)	289, 705, 715, 817, 1209
PspN4I	GGNNCC	4 cut(s)	245, 388, 869, 1086
PspOMI	GGGCCC	1 cut(s)	386
PspPI	GGNCC	5 cut(s)	160, 244, 386, 387, 482
PstI	CTGCAG	1 cut(s)	795
PstNI	CAGNNNCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	7 cut(s)	87, 306, 491, 540, 549, 969, 1134
SatI	GCNGC	4 cut(s)	17, 402, 1146, 1149
Sau3AI	GATC	2 cut(s)	845, 1021
Sau96I	GGNCC	5 cut(s)	160, 244, 386, 387, 482
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	6 cut(s)	242, 291, 707, 717, 819, 1211
SduI	GDGCHC	2 cut(s)	390, 1089
SexAI	ACCWGGT	1 cut(s)	289
SfaNI	GCATC	4 cut(s)	16, 115, 143, 883
SfcI	CTRYAG	4 cut(s)	733, 791, 885, 987
SinI	GGWCC	2 cut(s)	160, 482
SmiMI	CAYNNNNRTG	1 cut(s)	462
Sse9I	AATT	4 cut(s)	118, 313, 345, 1204
SsiI	CCGC	3 cut(s)	138, 607, 1145
SspMI	CTAG	3 cut(s)	228, 726, 1216
StyD4I	CCNGG	6 cut(s)	240, 289, 705, 715, 817, 1209
StyI	CCWWGG	4 cut(s)	227, 264, 561, 771
TaaI	ACNGT	4 cut(s)	251, 396, 538, 1115
TaiI	ACGT	1 cut(s)	1171
TasI	AATT	4 cut(s)	118, 313, 345, 1204
TauI	GCSGC	1 cut(s)	1148
TfiI	GAWTC	1 cut(s)	1118
Tru1I	TTAA	7 cut(s)	87, 306, 491, 540, 549, 969, 1134
Tru9I	TTAA	7 cut(s)	87, 306, 491, 540, 549, 969, 1134
TseFI	GTSAC	3 cut(s)	191, 285, 293
TseI	GCWGC	3 cut(s)	16, 401, 1148
Tsp45I	GTSAC	3 cut(s)	191, 285, 293
TspDTI	ATGAA	5 cut(s)	345, 431, 571, 843, 954
TspGWI	ACGGA	1 cut(s)	1030
VpaK11BI	GGWCC	2 cut(s)	160, 482
XapI	RAATTY	2 cut(s)	118, 1204
XmaJI	CCTAGG	1 cut(s)	227
XspI	CTAG	3 cut(s)	228, 726, 1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.