Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005100

Physical Location & Seq

Genomic Coordinates Forward (+)

9075901 .. 9081173

Gene Structure 5273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00086940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGTTACAGGCTTCTTATTTGATGTGCATGTATGCAACAGAACATAGATGTGGAGTGGTTGTAAAAGGACCAAGTTTGAGTGGAAACATATCAGGAACAGACCCTTTGAAGGACAACCGTTTACTTTTGCAAGCTGAAGCTCTAGATGGTAGTGACGTGGCACGGCATACAGCTAAAGTTGTTAACGAGTTATCCAAGGAAATATCAAAGATTCTCATTGCTCATCCACTGAATGCAAAGCGGGCCTCTGAAGGGAAGAACATAGCTAATGTTGCCCTTTTACGAGGCTGTGGTATCCGGATTGAGGTTTCTCCGTTTGCAAAGAAACATGGGTTATGGCCTTGTATGGTAGCTCCAACAAAAATCATTGCTGGATTGGGCTTATCTCTTAGCATTGATATCCTGGAAGCTCCTGGAGCAACTGGAGACTACAGAACACTTCTAACTTCCAAAGCAACTGCAATAGCCAAGGCACTCTCGGCTCCTCTGCAGTCTTGTCCCAATGTGTTTGTGCCAGGGGAAGATGAACACAAACCAGGCCGATCAGATGGCTATGATTTTGGGTTCCTCCACATAAAGGCTATAGATGATGCAGGTCATGACAAGGCAACCATTTTCAAAGTCAAAGGATTGGAAGCTGTGGATCGAGCTATAGGGCAGCTGGCCAGGCTCCTTTGGGAGACTGAATCAACTGGAAAATTTCAGTACTTTCTTTGTGTTACAGGAGACCACTCTACCCCAGTTGAATATGGAGACCACAGCTTTGAGCCAGTCCCATTCACAATATGTTCGTTGAAAGATTTTGTGGGTGCTGTAGGTGTGGAAACGATTTTGGGTGGTTCGCTTGATCCATTTCCTCTACCATCAGTAAAAGAGGGTGAATATCCAACAGATGTGGAGATGGAACAGGAGCCCACCAAACAGCCTCGAGCTTTCAACGGTGATTCAGTTTGTGAGTTTAATGAGATAGCGGCAGCAAGGGGATGTCTTGGACGTTTTTCTGGTGGTGAGATGATGGGAGTAATAAAGAATTTCCTGGGAGCTAGAAGCATGAACTGCTCAAGTCGAAAGTGTGCTGCGACCACTGGTTATATGCCGCCAAGCCCCGCCCCCCAGGAAATTGGCTACAACTTAATGATATGTAGTGAAGTTTTGAAATCCTTTAAGAAAACGAGAGAATTGAAAATAAGCATGCCAAGAGGTTTTCCTTTCTTAATCTTTCCATCTCTTTCAAACATTTCTTTAGGTAGACTTCTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metalloenzyme PhosphMutase

Protein Analysis

420

Amino Acids

45.27

Weight (kDa)

7.08

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhosphMutase	PF10143	9 - 78	5.3e-08	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Metalloenzyme	PF01676	183 - 264	1.5e-14	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30841 AT3G30841 AT4G09520
fragaria_vesca	FvH4_5g30870 FvH4_5g30870 FvH4_6g45710
malus_domestica	MD17G1071600.v1.1
prunus_persica	Prupe.3G243300_v2.0.a1 Prupe.3G243300_v2.0.a1
pyrus_communis	pycom17g07100
rosa_chinensis	RchiOBHm_Chr2g0163861 RchiOBHm_Chr5g0053071
rosa_laevigata	RLG00000021422 RLG00000034774
rosa_multiflora	Rmu_co7996526.1_g000001 Rmu_sc0001181.1_g000008 Rmu_sc0005917.1_g000001 Rmu_sc0037762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028940 Rroxscaffold_2G00086940
rosa_rugosa	Rorug02G0505000 Rorug05G0268300
rosa_samantha	Rh2AG573100 Rh2BG583800 Rh2CG554800 Rh2DG593400 Rh5AG340800 Rh5BG351300 Rh5DG367700
rosa_wichuraiana	Rw2G047390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	1249
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	4 cut(s)	241, 971, 1097, 1107
AclWI	GGATC	2 cut(s)	651, 842
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	2 cut(s)	698, 1030
AcuI	CTGAAG	2 cut(s)	156, 270
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	4 cut(s)	109, 252, 304, 577
AgsI	TTSAA	8 cut(s)	109, 619, 746, 796, 937, 1156, 1183, 1233
AjiI	CACGTC	1 cut(s)	157
AjnI	CCWGG	7 cut(s)	402, 412, 514, 535, 665, 1035, 1113
Alw26I	GTCTC	4 cut(s)	420, 674, 720, 747
AlwI	GGATC	2 cut(s)	651, 842
Ama87I	CYCGRG	1 cut(s)	927
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	4 cut(s)	243, 338, 538, 663
ApeKI	GCWGC	3 cut(s)	658, 974, 1076
ApoI	RAATTY	2 cut(s)	698, 1030
ArsI	GACNNNNNNTTYG	2 cut(s)	746, 778
AspS9I	GGNCC	2 cut(s)	68, 243
AsuHPI	GGTGA	3 cut(s)	890, 953, 1019
AvaI	CYCGRG	1 cut(s)	927
AvaII	GGWCC	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	665
BanII	GRGCYC	1 cut(s)	915
BbvI	GCAGC	3 cut(s)	670, 986, 1063
BccI	CCATC	6 cut(s)	140, 542, 871, 895, 1009, 1231
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	7 cut(s)	404, 414, 516, 537, 667, 1037, 1115
BciVI	GTATCC	1 cut(s)	305
BcoDI	GTCTC	4 cut(s)	420, 674, 720, 747
BfaI	CTAG	2 cut(s)	143, 1044
BfmI	CTRYAG	5 cut(s)	430, 488, 582, 651, 813
BfuAI	ACCTGC	1 cut(s)	584
BfuI	GTATCC	1 cut(s)	305
BisI	GCNGC	5 cut(s)	659, 972, 975, 1077, 1097
BlsI	GCNGC	5 cut(s)	660, 973, 976, 1078, 1098
BmcAI	AGTACT	1 cut(s)	707
Bme1390I	CCNGG	7 cut(s)	404, 414, 516, 537, 667, 1037, 1115
Bme18I	GGWCC	1 cut(s)	68
BmeT110I	CYCGRG	1 cut(s)	927
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	2 cut(s)	68, 243
BmiI	GGNNCC	4 cut(s)	483, 566, 671, 912
BmrFI	CCNGG	7 cut(s)	404, 414, 516, 537, 667, 1037, 1115
BmrI	ACTGGG	1 cut(s)	734
BmsI	GCATC	1 cut(s)	580
BmuI	ACTGGG	1 cut(s)	734
BpmI	CTGGAG	2 cut(s)	435, 444
BpuEI	CTTGAG	1 cut(s)	1045
BsaI	GGTCTC	2 cut(s)	720, 747
BsaJI	CCNNGG	5 cut(s)	195, 468, 515, 1036, 1113
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 252, 304, 577
Bse1I	ACTGG	5 cut(s)	427, 697, 740, 770, 1090
Bse3DI	GCAATG	2 cut(s)	216, 366
BseAI	TCCGGA	1 cut(s)	297
BseBI	CCWGG	7 cut(s)	404, 414, 516, 537, 667, 1037, 1115
BseDI	CCNNGG	5 cut(s)	195, 468, 515, 1036, 1113
BseGI	GGATG	2 cut(s)	223, 989
BseLI	CCNNNNNNNGG	4 cut(s)	109, 252, 304, 577
BseMI	GCAATG	2 cut(s)	216, 366
BseNI	ACTGG	5 cut(s)	427, 697, 740, 770, 1090
BseRI	GAGGAG	1 cut(s)	474
BseXI	GCAGC	3 cut(s)	670, 986, 1063
BshFI	GGCC	4 cut(s)	245, 340, 540, 665
BsiHKCI	CYCGRG	1 cut(s)	927
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	2 cut(s)	483, 758
BslI	CCNNNNNNNGG	4 cut(s)	109, 252, 304, 577
BsmAI	GTCTC	4 cut(s)	420, 674, 720, 747
BsmFI	GGGAC	2 cut(s)	483, 758
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	4 cut(s)	245, 340, 540, 665
Bso31I	GGTCTC	2 cut(s)	720, 747
BsoBI	CYCGRG	1 cut(s)	927
Bsp1286I	GDGCHC	1 cut(s)	915
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	542, 643, 847
BspACI	CCGC	4 cut(s)	241, 971, 1097, 1107
BspANI	GGCC	4 cut(s)	245, 340, 540, 665
BspEI	TCCGGA	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	4 cut(s)	483, 566, 671, 912
BspMAI	CTGCAG	1 cut(s)	492
BspMI	ACCTGC	1 cut(s)	584
BspPI	GGATC	2 cut(s)	651, 842
BspTNI	GGTCTC	2 cut(s)	720, 747
BsrDI	GCAATG	2 cut(s)	216, 366
BsrI	ACTGG	5 cut(s)	427, 697, 740, 770, 1090
BssECI	CCNNGG	5 cut(s)	195, 468, 515, 1036, 1113
BssMI	GATC	3 cut(s)	542, 643, 847
BssT1I	CCWWGG	2 cut(s)	195, 468
Bst2UI	CCWGG	7 cut(s)	404, 414, 516, 537, 667, 1037, 1115
Bst4CI	ACNGT	2 cut(s)	119, 941
BstAPI	GCANNNNNTGC	1 cut(s)	1056
BstC8I	GCNNGC	4 cut(s)	132, 243, 663, 1193
BstDEI	CTNAG	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	223, 989
BstKTI	GATC	3 cut(s)	545, 646, 850
BstMAI	GTCTC	4 cut(s)	420, 674, 720, 747
BstMBI	GATC	3 cut(s)	542, 643, 847
BstMWI	GCNNNNNNNGC	6 cut(s)	242, 272, 416, 479, 667, 1056
BstNI	CCWGG	7 cut(s)	404, 414, 516, 537, 667, 1037, 1115
BstNSI	RCATGY	2 cut(s)	31, 1195
BstSCI	CCNGG	7 cut(s)	402, 412, 514, 535, 665, 1035, 1113
BstSFI	CTRYAG	5 cut(s)	430, 488, 582, 651, 813
BstV1I	GCAGC	3 cut(s)	670, 986, 1063
BstXI	CCANNNNNNTGG	1 cut(s)	1121
BsuI	GTATCC	1 cut(s)	305
BsuRI	GGCC	4 cut(s)	245, 340, 540, 665
BtrI	CACGTC	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	223, 989
BtsIMutI	CAGTG	2 cut(s)	227, 1083
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	4 cut(s)	132, 243, 663, 1193
CciI	TCATGA	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	68, 243
Csp6I	GTAC	1 cut(s)	706
CspCI	CAANNNNNGTGG	2 cut(s)	876, 911
CviAII	CATG	5 cut(s)	28, 329, 599, 1051, 1192
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	3 cut(s)	544, 645, 849
DpnII	GATC	3 cut(s)	542, 643, 847
EaeI	YGGCCR	1 cut(s)	663
Eco130I	CCWWGG	2 cut(s)	195, 468
Eco24I	GRGCYC	1 cut(s)	915
Eco31I	GGTCTC	2 cut(s)	720, 747
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	2 cut(s)	156, 270
Eco88I	CYCGRG	1 cut(s)	927
EcoRII	CCWGG	7 cut(s)	402, 412, 514, 535, 665, 1035, 1113
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	195, 468
EcoT38I	GRGCYC	1 cut(s)	915
ErhI	CCWWGG	2 cut(s)	195, 468
FaeI	CATG	5 cut(s)	31, 332, 602, 1054, 1195
FaqI	GGGAC	2 cut(s)	483, 758
FatI	CATG	5 cut(s)	27, 328, 598, 1050, 1191
FauI	CCCGC	2 cut(s)	234, 1114
FblI	GTMKAC	1 cut(s)	1249
Fnu4HI	GCNGC	5 cut(s)	659, 972, 975, 1077, 1097
FokI	GGATG	2 cut(s)	210, 996
FriOI	GRGCYC	1 cut(s)	915
Fsp4HI	GCNGC	5 cut(s)	659, 972, 975, 1077, 1097
FspBI	CTAG	2 cut(s)	143, 1044
GluI	GCNGC	5 cut(s)	659, 972, 975, 1077, 1097
GsuI	CTGGAG	2 cut(s)	435, 444
HaeIII	GGCC	4 cut(s)	245, 340, 540, 665
HapII	CCGG	1 cut(s)	298
Hin1II	CATG	5 cut(s)	31, 332, 602, 1054, 1195
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	3 cut(s)	211, 686, 944
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	3 cut(s)	890, 953, 1019
Hpy166II	GTNNAC	3 cut(s)	122, 184, 1250
Hpy188I	TCNGA	2 cut(s)	250, 547
Hpy188III	TCNNGA	4 cut(s)	93, 143, 298, 599
Hpy8I	GTNNAC	3 cut(s)	122, 184, 1250
HpyAV	CCTTC	2 cut(s)	103, 245
HpyCH4III	ACNGT	2 cut(s)	119, 941
HpyCH4IV	ACGT	2 cut(s)	156, 994
HpyCH4V	TGCA	8 cut(s)	27, 35, 130, 236, 320, 461, 490, 593
HpyF10VI	GCNNNNNNNGC	6 cut(s)	242, 272, 416, 479, 667, 1056
HpyF3I	CTNAG	1 cut(s)	389
HpySE526I	ACGT	2 cut(s)	156, 994
Hsp92II	CATG	5 cut(s)	31, 332, 602, 1054, 1195
Kpn2I	TCCGGA	1 cut(s)	297
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	542, 643, 847
LmnI	GCTCC	7 cut(s)	358, 415, 416, 487, 675, 910, 1040
Lsp1109I	GCAGC	3 cut(s)	670, 986, 1063
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	2 cut(s)	143, 1044
MaeII	ACGT	2 cut(s)	156, 994
MaeIII	GTNAC	3 cut(s)	3, 152, 718
MalI	GATC	3 cut(s)	544, 645, 849
MboI	GATC	3 cut(s)	542, 643, 847
MboII	GAAGA	2 cut(s)	268, 533
MhlI	GDGCHC	1 cut(s)	915
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	4 cut(s)	698, 1030, 1119, 1178
MluNI	TGGCCA	1 cut(s)	665
MmeI	TCCRAC	2 cut(s)	380, 911
MnlI	CCTC	9 cut(s)	256, 278, 298, 495, 578, 867, 868, 936, 1193
Mox20I	TGGCCA	1 cut(s)	665
MroI	TCCGGA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	5 cut(s)	183, 960, 1133, 1164, 1214
MslI	CAYNNNNRTG	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	1 cut(s)	661
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	7 cut(s)	404, 414, 516, 537, 667, 1037, 1115
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	7 cut(s)	404, 414, 516, 537, 667, 1037, 1115
MwoI	GCNNNNNNNGC	6 cut(s)	242, 272, 416, 479, 667, 1056
NdeII	GATC	3 cut(s)	542, 643, 847
NlaIII	CATG	5 cut(s)	31, 332, 602, 1054, 1195
NlaIV	GGNNCC	4 cut(s)	483, 566, 671, 912
NmeAIII	GCCGAG	1 cut(s)	458
NmuCI	GTSAC	1 cut(s)	152
NspI	RCATGY	2 cut(s)	31, 1195
PaeI	GCATGC	1 cut(s)	1195
PaeR7I	CTCGAG	1 cut(s)	927
PagI	TCATGA	1 cut(s)	598
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	3 cut(s)	211, 686, 944
PfoI	TCCNGGA	2 cut(s)	402, 412
PkrI	GCNGC	5 cut(s)	660, 973, 976, 1078, 1098
Psp6I	CCWGG	7 cut(s)	402, 412, 514, 535, 665, 1035, 1113
PspGI	CCWGG	7 cut(s)	402, 412, 514, 535, 665, 1035, 1113
PspN4I	GGNNCC	4 cut(s)	483, 566, 671, 912
PspPI	GGNCC	2 cut(s)	68, 243
PspXI	VCTCGAGB	1 cut(s)	927
PstI	CTGCAG	1 cut(s)	492
PvuII	CAGCTG	1 cut(s)	661
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	5 cut(s)	183, 960, 1133, 1164, 1214
SatI	GCNGC	5 cut(s)	659, 972, 975, 1077, 1097
Sau3AI	GATC	3 cut(s)	542, 643, 847
Sau96I	GGNCC	2 cut(s)	68, 243
ScaI	AGTACT	1 cut(s)	707
ScrFI	CCNGG	7 cut(s)	404, 414, 516, 537, 667, 1037, 1115
SduI	GDGCHC	1 cut(s)	915
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	5 cut(s)	430, 488, 582, 651, 813
Sfr274I	CTCGAG	1 cut(s)	927
SinI	GGWCC	1 cut(s)	68
SlaI	CTCGAG	1 cut(s)	927
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	2 cut(s)	927, 1060
SmoI	CTYRAG	2 cut(s)	927, 1060
SphI	GCATGC	1 cut(s)	1195
Sse9I	AATT	4 cut(s)	698, 1030, 1119, 1178
SsiI	CCGC	4 cut(s)	241, 971, 1097, 1107
SspMI	CTAG	2 cut(s)	143, 1044
StyD4I	CCNGG	7 cut(s)	402, 412, 514, 535, 665, 1035, 1113
StyI	CCWWGG	2 cut(s)	195, 468
TaaI	ACNGT	2 cut(s)	119, 941
TaiI	ACGT	2 cut(s)	159, 997
TaqI	TCGA	3 cut(s)	646, 928, 1066
TasI	AATT	4 cut(s)	698, 1030, 1119, 1178
TatI	WGTACW	1 cut(s)	705
TauI	GCSGC	2 cut(s)	974, 1099
TfiI	GAWTC	3 cut(s)	211, 686, 944
Tru1I	TTAA	5 cut(s)	183, 960, 1133, 1164, 1214
Tru9I	TTAA	5 cut(s)	183, 960, 1133, 1164, 1214
TscAI	CASTG	2 cut(s)	234, 1090
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	3 cut(s)	658, 974, 1076
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	540, 1067
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	2 cut(s)	234, 1090
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	2 cut(s)	698, 1030
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	2 cut(s)	31, 1195
XhoI	CTCGAG	1 cut(s)	927
XmiI	GTMKAC	1 cut(s)	1249
XspI	CTAG	2 cut(s)	143, 1044
ZrmI	AGTACT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.