RchiOBHm_Chr6g0249291

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010627
Physical Location & Seq
Forward (+)
5198179 .. 5198565
387 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22349

Sequence Viewer

Length: 264 bp
ATGAGTATATTAGGCTCATATCAACTATTATCAGAGTTCTTGATTTTGAGGGCAATGGTGAAACAAAAGGGTGGTGGAGGCGGTGGAGCTCTTCCACATGCTTCAGTTGAGCTCACTAATGTTGAGTTTGATCTACAAGTCCACATGGATGAGATCACTGCAAAAACTGGTGCTCTCCAGGCCACTCTCAATACATACCAAGAGTCCTTTAACTCATTTCGTACTGATACGTTCTATAAGGCACAACTCTGCAGCAGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.48

Weight (kDa)

5.5

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 1 cut(s) 223
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 3 cut(s) 89, 112, 258
AluI AGCT 3 cut(s) 89, 112, 258
Alw21I GWGCWC 3 cut(s) 91, 114, 175
AlwNI CAGNNNCTG 2 cut(s) 258, 261
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 3 cut(s) 252, 255, 258
AsuHPI GGTGA 1 cut(s) 70
BanII GRGCYC 2 cut(s) 91, 114
Bbv12I GWGCWC 3 cut(s) 91, 114, 175
BbvI GCAGC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 3 cut(s) 253, 256, 259
BlsI GCNGC 3 cut(s) 254, 257, 260
Bme1390I CCNGG 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 182
BsiHKAI GWGCWC 3 cut(s) 91, 114, 175
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 3 cut(s) 91, 114, 175
Bsp143I GATC 2 cut(s) 130, 153
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 182
BspMAI CTGCAG 1 cut(s) 254
BspQI GCTCTTC 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 60
BsrI ACTGG 1 cut(s) 172
BssMI GATC 2 cut(s) 130, 153
Bst2UI CCWGG 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 258
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 2 cut(s) 133, 156
BstMBI GATC 2 cut(s) 130, 153
BstMWI GCNNNNNNNGC 2 cut(s) 179, 258
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
CaiI CAGNNNCTG 2 cut(s) 258, 261
Csp6I GTAC 1 cut(s) 222
CviAII CATG 2 cut(s) 98, 145
CviJI RGCY 5 cut(s) 15, 89, 112, 182, 258
CviKI_1 RGCY 5 cut(s) 15, 89, 112, 182, 258
CviQI GTAC 1 cut(s) 222
DpnI GATC 2 cut(s) 132, 155
DpnII GATC 2 cut(s) 130, 153
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Ecl136II GAGCTC 2 cut(s) 89, 112
Eco24I GRGCYC 2 cut(s) 91, 114
Eco53kI GAGCTC 2 cut(s) 89, 112
Eco57I CTGAAG 1 cut(s) 87
EcoICRI GAGCTC 2 cut(s) 89, 112
EcoRII CCWGG 1 cut(s) 177
EcoT38I GRGCYC 2 cut(s) 91, 114
FaeI CATG 2 cut(s) 101, 148
FaiI YATR 6 cut(s) 8, 19, 99, 146, 196, 237
FatI CATG 2 cut(s) 97, 144
Fnu4HI GCNGC 3 cut(s) 253, 256, 259
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 2 cut(s) 91, 114
Fsp4HI GCNGC 3 cut(s) 253, 256, 259
GluI GCNGC 3 cut(s) 253, 256, 259
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 182
Hin1II CATG 2 cut(s) 101, 148
HinfI GANTC 1 cut(s) 203
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 161, 252
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 258
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 2 cut(s) 101, 148
Kzo9I GATC 2 cut(s) 130, 153
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 3 cut(s) 153, 164, 191
Lsp1109I GCAGC 1 cut(s) 245
MaeII ACGT 1 cut(s) 230
MalI GATC 2 cut(s) 132, 155
MboI GATC 2 cut(s) 130, 153
MboII GAAGA 1 cut(s) 83
MhlI GDGCHC 3 cut(s) 91, 114, 175
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 2 cut(s) 42, 71
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 179, 258
NdeII GATC 2 cut(s) 130, 153
NlaIII CATG 2 cut(s) 101, 148
NspI RCATGY 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 96
PkrI GCNGC 3 cut(s) 254, 257, 260
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp124BI GAGCTC 2 cut(s) 91, 114
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PstI CTGCAG 1 cut(s) 254
PstNI CAGNNNCTG 2 cut(s) 258, 261
PvuII CAGCTG 1 cut(s) 258
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 1 cut(s) 147
SacI GAGCTC 2 cut(s) 91, 114
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 253, 256, 259
Sau3AI GATC 2 cut(s) 130, 153
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 3 cut(s) 91, 114, 175
SetI ASST 4 cut(s) 91, 114, 233, 260
SfcI CTRYAG 1 cut(s) 250
SgeI CNNG 8 cut(s) 52, 110, 149, 157, 180, 190, 191, 212
SmiMI CAYNNNNRTG 1 cut(s) 147
SsiI CCGC 1 cut(s) 81
SstI GAGCTC 2 cut(s) 91, 114
StyD4I CCNGG 1 cut(s) 177
TaiI ACGT 1 cut(s) 233
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 163
TseI GCWGC 3 cut(s) 252, 255, 258
TspRI CASTG 1 cut(s) 163
XceI RCATGY 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.