Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010627

Physical Location & Seq

Genomic Coordinates Forward (+)

20768912 .. 20773380

Gene Structure 4469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0216400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTCATCCTCATTTTGCATTTTGTTTGATTTCCATGCTTGGCATTGGCAGGTGGCTTTAAAAACACTGATAGTTATTCATAGGACTTTGAGGGAGGGTGATCCTACCTTCAGAGAAGAACTTGTAAATTTCTCTCAGAGAGGACGTATTCTCCAGCTTTCTAATTTTAAAGACGACTCCAGTCCCATTGCTTGGGATTGCTCTGCCTGGGTGCGTACATACGCTTTGTTTTTAGAGGAACGACTTGAATGCTTTAGGGTTCTGAAGTATGACATTGAAGCTGAACGTCTTCCAAGACCTGCCCAGGCACAGGAGAAGAAAGTTTTGTTGATTGATGTGGCAGCAATGCTAAAGGATACAACTCGAGAATTGGATAGTGAAGAACTGTTGGACCACTTGCCTGCTTTACAGCAGCTGTCGTATCGCCTCATTGGTTGTCGGCCAGAAGGAGCAGCTGTCATGAATTATGTTATACAGTATGCACTGGCGCTGGTACTGAAAGAGAGCTTTAAAATATATTGTGCTGTCAATGGTGGAATTATAAATCTTATTGATAAGTTTTTTGAGATGCCAAGACATGAAGCGGTTAAAGCCCTTGATGTTTATAAGCGAGCTGGCCAACAGGCTGCCAGTCTCTCTGATTTTTATGAAATTTGCAAAGGGTTGGAACTTGCTAGGAATTTCCAGTTTCCTGTCTTGAGAGAGCCTCCTCAGTCCTTCCTTACAACAATGGAAGAATATATAAGAGAAGCACCGCAGGCTGTTAGTGTTCCAACTGAGCCATTGCTTCTTTTGACATATAGACCAGAAGAGCCTCTACCTGAAGACACAAACTTATCTAGTGATGAACCTGAGCAGCTACCTTCCGACTTTCTAGCTCAATCTGATGTTGAGACTGCGACTCCACCACCACCACCTCCTCCTCCTGCTCCTCAAAGTAACCTGGCTACTGGAGATTTACTGGGATTGGATTTTGCTACAGGTGATGCATCTGCCATTGAGGAAAGCAATGCTTTGGCTCTAGCCATAGTACCATCTGAAACTGCTCCAACATTCAATGTGCAATCAAAAGATTTTGATCCTAGTGGATGGGAACTTGCCCTAGTCACAACTCCAAGTACCGACATTTCATCAGCTAATGACAGGCAATTGGCTGGCGGGTTGGACTCCCTTACCCTATGGCATCAAGGCATAGGGGAGTTCATACATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

404

Amino Acids

45.2

Weight (kDa)

4.61

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANTH	PF07651	15 - 250	9.3e-69	ANTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010627)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0249291
rosa_laevigata	RLG00000005450
rosa_multiflora	Rmu_co8431287.1_g000002 Rmu_co8465865.1_g000001 Rmu_sc0000494.1_g000014 Rmu_sc0002294.1_g000024 Rmu_sc0003546.1_g000006 Rmu_sc0004862.1_g000014 Rmu_sc0007849.1_g000013
rosa_rugosa	Rorug02G0216400 Rorug03G0167200 Rorug03G0238400
rosa_samantha	Rh1CG030900 Rh2BG308600 Rh2CG605600 Rh3BG323800 Rh3CG333400 Rh3DG335500 Rh4DG024500 Rh4DG377100 Rh6BG454500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	542, 606
AarI	CACCTGC	1 cut(s)	40
Acc36I	ACCTGC	2 cut(s)	40, 307
AccB7I	CCANNNNNTGG	1 cut(s)	192
AciI	CCGC	3 cut(s)	584, 755, 1158
AclWI	GGATC	2 cut(s)	95, 1073
AcoI	YGGCCR	2 cut(s)	440, 616
AcsI	RAATTY	3 cut(s)	127, 651, 679
AcuI	CTGAAG	3 cut(s)	94, 284, 843
AfaI	GTAC	4 cut(s)	217, 495, 1032, 1120
AfiI	CCNNNNNNNGG	2 cut(s)	192, 310
AgsI	TTSAA	3 cut(s)	248, 278, 1057
AjnI	CCWGG	3 cut(s)	206, 303, 942
AluBI	AGCT	9 cut(s)	157, 281, 415, 455, 507, 614, 859, 878, 1136
AluI	AGCT	9 cut(s)	157, 281, 415, 455, 507, 614, 859, 878, 1136
Alw26I	GTCTC	2 cut(s)	638, 887
AlwI	GGATC	2 cut(s)	95, 1073
AlwNI	CAGNNNCTG	1 cut(s)	415
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	2 cut(s)	440, 616
ApeKI	GCWGC	5 cut(s)	341, 412, 452, 626, 856
ApoI	RAATTY	3 cut(s)	127, 651, 679
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	110, 995
AvaI	CYCGRG	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	618
BarI	GAAGNNNNNNTAC	2 cut(s)	801, 833
BbsI	GAAGAC	2 cut(s)	281, 831
BbvI	GCAGC	5 cut(s)	353, 424, 464, 613, 868
BccI	CCATC	2 cut(s)	1042, 1083
BcgI	CGANNNNNNTGC	2 cut(s)	231, 265
BciT130I	CCWGG	3 cut(s)	208, 305, 944
BciVI	GTATCC	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	638, 887
BfaI	CTAG	6 cut(s)	675, 840, 875, 1022, 1083, 1103
BfmI	CTRYAG	1 cut(s)	978
BfoI	RGCGCY	1 cut(s)	491
BfuAI	ACCTGC	2 cut(s)	40, 307
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	5 cut(s)	342, 413, 453, 627, 857
BlsI	GCNGC	5 cut(s)	343, 414, 454, 628, 858
Bme1390I	CCNGG	3 cut(s)	208, 305, 944
Bme18I	GGWCC	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	391
BmrFI	CCNGG	3 cut(s)	208, 305, 944
BmrI	ACTGGG	1 cut(s)	971
BmsI	GCATC	4 cut(s)	558, 976, 998, 1192
BmuI	ACTGGG	1 cut(s)	971
BoxI	GACNNNNGTC	1 cut(s)	180
BpiI	GAAGAC	2 cut(s)	281, 831
BplI	GAGNNNNNCTC	2 cut(s)	691, 723
BpmI	CTGGAG	3 cut(s)	137, 163, 972
Bpu10I	CCTNAGC	1 cut(s)	852
BpuEI	CTTGAG	1 cut(s)	718
BsaBI	GATNNNNATC	1 cut(s)	1077
BsaJI	CCNNGG	2 cut(s)	207, 303
BsaXI	ACNNNNNCTCC	6 cut(s)	135, 165, 441, 471, 886, 916
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 310
Bse1I	ACTGG	6 cut(s)	180, 489, 630, 685, 955, 966
Bse3DI	GCAATG	4 cut(s)	186, 351, 782, 1015
Bse8I	GATNNNNATC	1 cut(s)	1077
BseBI	CCWGG	3 cut(s)	208, 305, 944
BseDI	CCNNGG	2 cut(s)	207, 303
BseGI	GGATG	2 cut(s)	5, 1094
BseJI	GATNNNNATC	1 cut(s)	1077
BseLI	CCNNNNNNNGG	2 cut(s)	192, 310
BseMI	GCAATG	4 cut(s)	186, 351, 782, 1015
BseMII	CTCAG	4 cut(s)	149, 725, 768, 843
BseNI	ACTGG	6 cut(s)	180, 489, 630, 685, 955, 966
BseRI	GAGGAG	4 cut(s)	699, 909, 912, 921
BseXI	GCAGC	5 cut(s)	353, 424, 464, 613, 868
BshFI	GGCC	2 cut(s)	442, 618
BsiHKCI	CYCGRG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	192, 310
BsmAI	GTCTC	2 cut(s)	638, 887
BsmFI	GGGAC	1 cut(s)	168
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	442, 618
BsoBI	CYCGRG	1 cut(s)	363
Bsp143I	GATC	2 cut(s)	100, 1078
BspACI	CCGC	3 cut(s)	584, 755, 1158
BspANI	GGCC	2 cut(s)	442, 618
BspCNI	CTCAG	4 cut(s)	148, 724, 769, 844
BspHI	TCATGA	1 cut(s)	459
BspMI	ACCTGC	2 cut(s)	40, 307
BspPI	GGATC	2 cut(s)	95, 1073
BspQI	GCTCTTC	1 cut(s)	804
BsrDI	GCAATG	4 cut(s)	186, 351, 782, 1015
BsrI	ACTGG	6 cut(s)	180, 489, 630, 685, 955, 966
BssECI	CCNNGG	2 cut(s)	207, 303
BssMI	GATC	2 cut(s)	100, 1078
Bst2UI	CCWGG	3 cut(s)	208, 305, 944
Bst4CI	ACNGT	2 cut(s)	387, 477
Bst6I	CTCTTC	1 cut(s)	804
BstC8I	GCNNGC	5 cut(s)	402, 612, 616, 759, 1156
BstDEI	CTNAG	4 cut(s)	135, 711, 777, 852
BstF5I	GGATG	2 cut(s)	5, 1094
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	2 cut(s)	103, 1081
BstMAI	GTCTC	2 cut(s)	638, 887
BstMBI	GATC	2 cut(s)	100, 1078
BstMWI	GCNNNNNNNGC	2 cut(s)	590, 758
BstNI	CCWGG	3 cut(s)	208, 305, 944
BstPAI	GACNNNNGTC	1 cut(s)	180
BstSCI	CCNGG	3 cut(s)	206, 303, 942
BstSFI	CTRYAG	1 cut(s)	978
BstV1I	GCAGC	5 cut(s)	353, 424, 464, 613, 868
BstV2I	GAAGAC	2 cut(s)	281, 831
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	442, 618
BtsCI	GGATG	2 cut(s)	5, 1094
BtsIMutI	CAGTG	2 cut(s)	65, 482
BveI	ACCTGC	2 cut(s)	40, 307
Cac8I	GCNNGC	5 cut(s)	402, 612, 616, 759, 1156
CaiI	CAGNNNCTG	1 cut(s)	415
CciI	TCATGA	1 cut(s)	459
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	391
Csp6I	GTAC	4 cut(s)	216, 494, 1031, 1119
CviAII	CATG	3 cut(s)	35, 460, 578
CviQI	GTAC	4 cut(s)	216, 494, 1031, 1119
DdeI	CTNAG	4 cut(s)	135, 711, 777, 852
DpnI	GATC	2 cut(s)	102, 1080
DpnII	GATC	2 cut(s)	100, 1078
DraI	TTTAAA	3 cut(s)	60, 169, 511
EaeI	YGGCCR	2 cut(s)	440, 616
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
Eco47I	GGWCC	1 cut(s)	391
Eco57I	CTGAAG	3 cut(s)	94, 284, 843
Eco88I	CYCGRG	1 cut(s)	363
EcoRII	CCWGG	3 cut(s)	206, 303, 942
EcoT22I	ATGCAT	1 cut(s)	991
FaeI	CATG	3 cut(s)	38, 463, 581
FalI	AAGNNNNNCTT	2 cut(s)	997, 1029
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	3 cut(s)	34, 459, 577
FauI	CCCGC	1 cut(s)	1151
Fnu4HI	GCNGC	5 cut(s)	342, 413, 453, 627, 857
FokI	GGATG	1 cut(s)	1101
Fsp4HI	GCNGC	5 cut(s)	342, 413, 453, 627, 857
FspBI	CTAG	6 cut(s)	675, 840, 875, 1022, 1083, 1103
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	5 cut(s)	342, 413, 453, 627, 857
GsuI	CTGGAG	3 cut(s)	137, 163, 972
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	2 cut(s)	442, 618
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	3 cut(s)	38, 463, 581
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HinfI	GANTC	3 cut(s)	176, 901, 1166
HphI	GGTGA	2 cut(s)	110, 995
Hpy188I	TCNGA	7 cut(s)	113, 138, 264, 640, 868, 886, 1039
Hpy188III	TCNNGA	3 cut(s)	365, 460, 697
HpyAV	CCTTC	4 cut(s)	118, 440, 727, 873
HpyCH4III	ACNGT	2 cut(s)	387, 477
HpyCH4IV	ACGT	2 cut(s)	145, 286
HpyCH4V	TGCA	5 cut(s)	18, 482, 657, 989, 1063
HpyF10VI	GCNNNNNNNGC	2 cut(s)	590, 758
HpyF3I	CTNAG	4 cut(s)	135, 711, 777, 852
HpySE526I	ACGT	2 cut(s)	145, 286
Hsp92II	CATG	3 cut(s)	38, 463, 581
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	2 cut(s)	100, 1078
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	3 cut(s)	449, 934, 1051
Lsp1109I	GCAGC	5 cut(s)	353, 424, 464, 613, 868
LweI	GCATC	4 cut(s)	558, 976, 998, 1192
MaeI	CTAG	6 cut(s)	675, 840, 875, 1022, 1083, 1103
MaeII	ACGT	2 cut(s)	145, 286
MaeIII	GTNAC	2 cut(s)	938, 1105
MalI	GATC	2 cut(s)	102, 1080
MboI	GATC	2 cut(s)	100, 1078
MboII	GAAGA	7 cut(s)	128, 281, 328, 392, 746, 821, 836
MfeI	CAATTG	1 cut(s)	1148
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	8 cut(s)	127, 163, 368, 463, 537, 651, 679, 1148
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	3 cut(s)	170, 895, 1160
MmeI	TCCRAC	6 cut(s)	369, 645, 797, 891, 1073, 1143
Mox20I	TGGCCA	1 cut(s)	618
Mph1103I	ATGCAT	1 cut(s)	991
MroXI	GAANNNNTTC	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	4 cut(s)	59, 168, 510, 588
Msp20I	TGGCCA	1 cut(s)	618
MspA1I	CMGCKG	2 cut(s)	415, 455
MspR9I	CCNGG	3 cut(s)	208, 305, 944
MunI	CAATTG	1 cut(s)	1148
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	3 cut(s)	208, 305, 944
MwoI	GCNNNNNNNGC	2 cut(s)	590, 758
NdeII	GATC	2 cut(s)	100, 1078
NlaIII	CATG	3 cut(s)	38, 463, 581
NmuCI	GTSAC	1 cut(s)	1105
NsiI	ATGCAT	1 cut(s)	991
PaeR7I	CTCGAG	1 cut(s)	363
PagI	TCATGA	1 cut(s)	459
PaqCI	CACCTGC	1 cut(s)	40
PciSI	GCTCTTC	1 cut(s)	804
PctI	GAATGC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	288
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	5 cut(s)	343, 414, 454, 628, 858
PleI	GAGTC	3 cut(s)	170, 895, 1160
PpsI	GAGTC	3 cut(s)	170, 895, 1160
PshAI	GACNNNNGTC	1 cut(s)	180
PsiI	TTATAA	2 cut(s)	542, 606
Psp6I	CCWGG	3 cut(s)	206, 303, 942
PspGI	CCWGG	3 cut(s)	206, 303, 942
PspPI	GGNCC	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	415
PvuII	CAGCTG	2 cut(s)	415, 455
RsaI	GTAC	4 cut(s)	217, 495, 1032, 1120
RsaNI	GTAC	4 cut(s)	216, 494, 1031, 1119
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	4 cut(s)	59, 168, 510, 588
SatI	GCNGC	5 cut(s)	342, 413, 453, 627, 857
Sau3AI	GATC	2 cut(s)	100, 1078
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	3 cut(s)	170, 895, 1160
ScrFI	CCNGG	3 cut(s)	208, 305, 944
SfaNI	GCATC	4 cut(s)	558, 976, 998, 1192
SfcI	CTRYAG	1 cut(s)	978
Sfr274I	CTCGAG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	391
SlaI	CTCGAG	1 cut(s)	363
SmlI	CTYRAG	2 cut(s)	363, 697
SmoI	CTYRAG	2 cut(s)	363, 697
Sse9I	AATT	8 cut(s)	127, 163, 368, 463, 537, 651, 679, 1148
SsiI	CCGC	3 cut(s)	584, 755, 1158
SspMI	CTAG	6 cut(s)	675, 840, 875, 1022, 1083, 1103
StyD4I	CCNGG	3 cut(s)	206, 303, 942
TaaI	ACNGT	2 cut(s)	387, 477
TaiI	ACGT	2 cut(s)	148, 289
TaqI	TCGA	1 cut(s)	364
TasI	AATT	8 cut(s)	127, 163, 368, 463, 537, 651, 679, 1148
Tru1I	TTAA	4 cut(s)	59, 168, 510, 588
Tru9I	TTAA	4 cut(s)	59, 168, 510, 588
TscAI	CASTG	2 cut(s)	72, 489
TseFI	GTSAC	1 cut(s)	1105
TseI	GCWGC	5 cut(s)	341, 412, 452, 626, 856
Tsp45I	GTSAC	1 cut(s)	1105
TspDTI	ATGAA	7 cut(s)	68, 476, 594, 663, 861, 1119, 1192
TspRI	CASTG	2 cut(s)	72, 489
Van91I	CCANNNNNTGG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	3 cut(s)	127, 651, 679
XhoI	CTCGAG	1 cut(s)	363
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	6 cut(s)	675, 840, 875, 1022, 1083, 1103
Zsp2I	ATGCAT	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.