Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010627

Physical Location & Seq

Genomic Coordinates Forward (+)

4488442 .. 4488657

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG024500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGAGTGGATTGGGTGTGAGATTAAGAAAGAGAGGCCGAAAAGCAAATGGGTTTCTTCTCCGAGCACCAACAGTGAGCCTAAGAAGCTCAGCAAGAAATTGGAATGGTGGGTGTCTTTGGATGAAGAGGTGGACTTTCTCAGAGACGTCATCTGCATCGAAGTCGGAGTGGACCTTGAAGTGGAAGAGGCGGGAGAGGAAGAAAAAGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

71

Amino Acids

8.19

Weight (kDa)

4.58

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010627)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0249291
rosa_laevigata	RLG00000005450
rosa_multiflora	Rmu_co8431287.1_g000002 Rmu_co8465865.1_g000001 Rmu_sc0000494.1_g000014 Rmu_sc0002294.1_g000024 Rmu_sc0003546.1_g000006 Rmu_sc0004862.1_g000014 Rmu_sc0007849.1_g000013
rosa_rugosa	Rorug02G0216400 Rorug03G0167200 Rorug03G0238400
rosa_samantha	Rh1CG030900 Rh2BG308600 Rh2CG605600 Rh3BG323800 Rh3CG333400 Rh3DG335500 Rh4DG024500 Rh4DG377100 Rh6BG454500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AciI	CCGC	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	179
AluBI	AGCT	2 cut(s)	88, 209
AluI	AGCT	2 cut(s)	88, 209
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	196
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	214
BisI	GCNGC	1 cut(s)	210
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmsI	GCATC	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	103, 154
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	138
BsmBI	CGTCTC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp1720I	GCTNAGC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	2 cut(s)	102, 153
BssNI	GRCGYC	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	2 cut(s)	120, 180
BstACI	GRCGYC	1 cut(s)	147
BstDEI	CTNAG	3 cut(s)	81, 89, 140
BstF5I	GGATG	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	172
CviJI	RGCY	4 cut(s)	37, 79, 88, 209
CviKI_1	RGCY	4 cut(s)	37, 79, 88, 209
DdeI	CTNAG	3 cut(s)	81, 89, 140
Eam1104I	CTCTTC	2 cut(s)	120, 180
EarI	CTCTTC	2 cut(s)	120, 180
Eco47I	GGWCC	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	138
FauI	CCCGC	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	214
GluI	GCNGC	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	147
Hpy166II	GTNNAC	2 cut(s)	133, 172
Hpy188I	TCNGA	3 cut(s)	63, 143, 167
Hpy8I	GTNNAC	2 cut(s)	133, 172
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	3 cut(s)	81, 89, 140
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	1 cut(s)	214
MaeII	ACGT	1 cut(s)	147
MboII	GAAGA	4 cut(s)	48, 137, 197, 212
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	4 cut(s)	27, 121, 181, 190
MseI	TTAA	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	210
Sau96I	GGNCC	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	5 cut(s)	90, 132, 150, 177, 211
SfaNI	GCATC	1 cut(s)	165
SgeI	CNNG	4 cut(s)	75, 106, 188, 204
SinI	GGWCC	1 cut(s)	172
Sse9I	AATT	1 cut(s)	98
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	172
XspI	CTAG	1 cut(s)	214
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.