Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8465865.1

Orthogroup ID

OG0010627

Physical Location & Seq

Genomic Coordinates Forward (+)

130 .. 1044

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8465865.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atggtgaagcttaaggggggtggaggcgctgtaactcaacctcacagctccggtgaacttaccagtgtggagtttgacctccaggtccatagagatgaaacggcggccaagttttgtgctctgcaggagtcggtctcgaaaatccttgaagaactcagatccatgaaaacggaggccaagaacctgcagatccagcaaggttcacctcagttgaacgttggatccatacaaatccctattggttcaatagggggtagctctatgggggcatcggtctcgtcgactatggctacatcgacatctattcaagttgaaggagggggtagcacacataaacccaatcattctagctctagttttcccttgaacttaaatgataatgatgtgatattggggtttgctagtgatagctatgctgaaatgattaaggctaccaatcttatgcaaacaactagtattgatgtgagtggatctgatacaattaataaattgaatcataaagttgttggatgcatgggacctagcaacttgtcacatcatgaacaaaaccaattttctcagcatgttacttttgacccacaaacctttaaccggatttctggatatggtaacacctcatcacatggattgaatactagtgcatatggctttgctccaacttcacactacagctacactgatccatttgtcatgacctattcaggaccctacccatacactccaattgatctcacatcatatttgcaacctactttaccatttgccatgcctgcctacttgagtgcacgaactagtccaacagtggggctatcaacagcacatccaatcgtcaatgtgagccaaagctattatcagccttatactcattctcacatggtgggctcatccacaccacaaactagtcttgtccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

32.5

Weight (kDa)

6.08

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010627)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0249291
rosa_laevigata	RLG00000005450
rosa_multiflora	Rmu_co8431287.1_g000002 Rmu_co8465865.1_g000001 Rmu_sc0000494.1_g000014 Rmu_sc0002294.1_g000024 Rmu_sc0003546.1_g000006 Rmu_sc0004862.1_g000014 Rmu_sc0007849.1_g000013
rosa_rugosa	Rorug02G0216400 Rorug03G0167200 Rorug03G0238400
rosa_samantha	Rh1CG030900 Rh2BG308600 Rh2CG605600 Rh3BG323800 Rh3CG333400 Rh3DG335500 Rh4DG024500 Rh4DG377100 Rh6BG454500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	281
AciI	CCGC	1 cut(s)	104
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	6 cut(s)	153, 184, 216, 229, 478, 674
AcoI	YGGCCR	1 cut(s)	105
AdeI	CACNNNGTG	1 cut(s)	877
AfiI	CCNNNNNNNGG	2 cut(s)	591, 803
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	8 cut(s)	149, 214, 246, 308, 314, 367, 493, 631
AhlI	ACTAGT	4 cut(s)	452, 635, 791, 899
AjnI	CCWGG	1 cut(s)	81
AloI	GAACNNNNNNTCC	2 cut(s)	206, 238
AluBI	AGCT	7 cut(s)	10, 48, 258, 351, 411, 672, 846
AluI	AGCT	7 cut(s)	10, 48, 258, 351, 411, 672, 846
Alw21I	GWGCWC	2 cut(s)	121, 787
Alw26I	GTCTC	2 cut(s)	139, 280
Alw44I	GTGCAC	1 cut(s)	783
AlwI	GGATC	6 cut(s)	153, 184, 216, 229, 478, 674
AoxI	GGCC	2 cut(s)	105, 174
ApaLI	GTGCAC	1 cut(s)	783
AseI	ATTAAT	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	3 cut(s)	85, 518, 704
AsuHPI	GGTGA	3 cut(s)	16, 65, 195
AvaII	GGWCC	3 cut(s)	85, 518, 704
BaeGI	GKGCMC	1 cut(s)	787
BamHI	GGATCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	884
Bbv12I	GWGCWC	2 cut(s)	121, 787
BceAI	ACGGC	1 cut(s)	117
BcgI	CGANNNNNNTGC	2 cut(s)	258, 292
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	139, 280
BcuI	ACTAGT	4 cut(s)	452, 635, 791, 899
BfaI	CTAG	8 cut(s)	348, 354, 402, 453, 522, 636, 792, 900
BfmI	CTRYAG	3 cut(s)	122, 185, 667
BfoI	RGCGCY	1 cut(s)	30
BfrI	CTTAAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	192
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	3 cut(s)	85, 518, 704
BmgT120I	GGNCC	3 cut(s)	85, 518, 704
BmiI	GGNNCC	3 cut(s)	223, 519, 706
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	278, 500
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	799
BsaI	GGTCTC	2 cut(s)	139, 280
BsaWI	WCCGGW	2 cut(s)	50, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	591, 803
Bse1I	ACTGG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	83
BseGI	GGATG	3 cut(s)	515, 820, 884
BseLI	CCNNNNNNNGG	2 cut(s)	591, 803
BseMII	CTCAG	3 cut(s)	169, 221, 572
BseNI	ACTGG	1 cut(s)	63
BseSI	GKGCMC	1 cut(s)	787
BshFI	GGCC	2 cut(s)	107, 176
BsiHKAI	GWGCWC	2 cut(s)	121, 787
BsiSI	CCGG	2 cut(s)	51, 592
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	2 cut(s)	591, 803
BsmAI	GTCTC	2 cut(s)	139, 280
BsmFI	GGGAC	1 cut(s)	531
BsnI	GGCC	2 cut(s)	107, 176
Bso31I	GGTCTC	2 cut(s)	139, 280
Bsp1286I	GDGCHC	3 cut(s)	121, 787, 884
Bsp143I	GATC	6 cut(s)	158, 189, 221, 470, 679, 727
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	107, 176
BspCNI	CTCAG	3 cut(s)	168, 220, 571
BspHI	TCATGA	2 cut(s)	538, 690
BspLI	GGNNCC	3 cut(s)	223, 519, 706
BspMAI	CTGCAG	2 cut(s)	126, 189
BspMI	ACCTGC	1 cut(s)	192
BspPI	GGATC	6 cut(s)	153, 184, 216, 229, 478, 674
BspTI	CTTAAG	1 cut(s)	11
BspTNI	GGTCTC	2 cut(s)	139, 280
BsrI	ACTGG	1 cut(s)	63
BssMI	GATC	6 cut(s)	158, 189, 221, 470, 679, 727
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	802
BstAFI	CTTAAG	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	771
BstDEI	CTNAG	3 cut(s)	155, 207, 558
BstF5I	GGATG	3 cut(s)	515, 820, 884
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	6 cut(s)	161, 192, 224, 473, 682, 730
BstMAI	GTCTC	2 cut(s)	139, 280
BstMBI	GATC	6 cut(s)	158, 189, 221, 470, 679, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 770
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	3 cut(s)	122, 185, 667
BstSLI	GKGCMC	1 cut(s)	787
BstX2I	RGATCY	4 cut(s)	158, 189, 221, 470
BstYI	RGATCY	4 cut(s)	158, 189, 221, 470
BsuRI	GGCC	2 cut(s)	107, 176
BtsCI	GGATG	3 cut(s)	515, 820, 884
BtsIMutI	CAGTG	3 cut(s)	70, 675, 807
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	771
CciI	TCATGA	2 cut(s)	538, 690
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	3 cut(s)	85, 518, 704
CviAII	CATG	8 cut(s)	163, 514, 539, 563, 623, 691, 766, 874
DdeI	CTNAG	3 cut(s)	155, 207, 558
DpnI	GATC	6 cut(s)	160, 191, 223, 472, 681, 729
DpnII	GATC	6 cut(s)	158, 189, 221, 470, 679, 727
DraIII	CACNNNGTG	1 cut(s)	877
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	884
Eco31I	GGTCTC	2 cut(s)	139, 280
Eco47I	GGWCC	3 cut(s)	85, 518, 704
EcoO109I	RGGNCCY	2 cut(s)	518, 704
EcoRII	CCWGG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	515
EcoT38I	GRGCYC	1 cut(s)	884
FaeI	CATG	8 cut(s)	166, 517, 542, 566, 626, 694, 769, 877
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	8 cut(s)	162, 513, 538, 562, 622, 690, 765, 873
FauNDI	CATATG	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	3 cut(s)	522, 807, 871
FriOI	GRGCYC	1 cut(s)	884
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	8 cut(s)	348, 354, 402, 453, 522, 636, 792, 900
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	65
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	107, 176
HapII	CCGG	2 cut(s)	51, 592
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	8 cut(s)	166, 517, 542, 566, 626, 694, 769, 877
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	128, 493
HpaII	CCGG	2 cut(s)	51, 592
HphI	GGTGA	3 cut(s)	16, 65, 195
Hpy166II	GTNNAC	4 cut(s)	56, 203, 282, 785
Hpy188I	TCNGA	2 cut(s)	158, 475
Hpy188III	TCNNGA	5 cut(s)	136, 539, 600, 691, 702
Hpy8I	GTNNAC	4 cut(s)	56, 203, 282, 785
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	802
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	7 cut(s)	124, 187, 445, 513, 641, 745, 785
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 770
HpyF3I	CTNAG	3 cut(s)	155, 207, 558
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	8 cut(s)	166, 517, 542, 566, 626, 694, 769, 877
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	6 cut(s)	158, 189, 221, 470, 679, 727
LmnI	GCTCC	2 cut(s)	53, 658
LweI	GCATC	2 cut(s)	278, 500
MaeI	CTAG	8 cut(s)	348, 354, 402, 453, 522, 636, 792, 900
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	4 cut(s)	31, 531, 565, 608
MalI	GATC	6 cut(s)	160, 191, 223, 472, 681, 729
MboI	GATC	6 cut(s)	158, 189, 221, 470, 679, 727
MboII	GAAGA	1 cut(s)	161
MfeI	CAATTG	1 cut(s)	723
MflI	RGATCY	4 cut(s)	158, 189, 221, 470
MhlI	GDGCHC	3 cut(s)	121, 787, 884
MluCI	AATT	4 cut(s)	480, 488, 551, 723
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	4 cut(s)	199, 487, 680, 821
MnlI	CCTC	7 cut(s)	17, 51, 89, 166, 216, 311, 625
Mph1103I	ATGCAT	1 cut(s)	515
MseI	TTAA	5 cut(s)	12, 371, 426, 483, 588
MslI	CAYNNNNRTG	1 cut(s)	93
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	2 cut(s)	51, 592
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	193, 770
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	6 cut(s)	158, 189, 221, 470, 679, 727
NlaIII	CATG	8 cut(s)	166, 517, 542, 566, 626, 694, 769, 877
NlaIV	GGNNCC	3 cut(s)	223, 519, 706
NmuCI	GTSAC	1 cut(s)	531
NsiI	ATGCAT	1 cut(s)	515
NspI	RCATGY	1 cut(s)	566
PagI	TCATGA	2 cut(s)	538, 690
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	2 cut(s)	518, 704
PshBI	ATTAAT	1 cut(s)	483
Psp1406I	AACGTT	1 cut(s)	216
Psp5II	RGGWCCY	2 cut(s)	518, 704
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	3 cut(s)	223, 519, 706
PspPI	GGNCC	3 cut(s)	85, 518, 704
PspPPI	RGGWCCY	2 cut(s)	518, 704
PstI	CTGCAG	2 cut(s)	126, 189
PsuI	RGATCY	4 cut(s)	158, 189, 221, 470
RseI	CAYNNNNRTG	1 cut(s)	93
SalI	GTCGAC	1 cut(s)	280
SaqAI	TTAA	5 cut(s)	12, 371, 426, 483, 588
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	6 cut(s)	158, 189, 221, 470, 679, 727
Sau96I	GGNCC	3 cut(s)	85, 518, 704
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	3 cut(s)	121, 787, 884
SfaNI	GCATC	2 cut(s)	278, 500
SfcI	CTRYAG	3 cut(s)	122, 185, 667
SinI	GGWCC	3 cut(s)	85, 518, 704
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	11, 778
SmoI	CTYRAG	2 cut(s)	11, 778
SpeI	ACTAGT	4 cut(s)	452, 635, 791, 899
Sse9I	AATT	4 cut(s)	480, 488, 551, 723
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	8 cut(s)	348, 354, 402, 453, 522, 636, 792, 900
StyD4I	CCNGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	802
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	137, 281, 296
TaqII	GACCGA	2 cut(s)	121, 262
TasI	AATT	4 cut(s)	480, 488, 551, 723
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	5 cut(s)	12, 371, 426, 483, 588
Tru9I	TTAA	5 cut(s)	12, 371, 426, 483, 588
TscAI	CASTG	3 cut(s)	70, 682, 807
TseFI	GTSAC	1 cut(s)	531
Tsp45I	GTSAC	1 cut(s)	531
TspDTI	ATGAA	3 cut(s)	111, 179, 555
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	3 cut(s)	70, 682, 807
Vha464I	CTTAAG	1 cut(s)	11
VneI	GTGCAC	1 cut(s)	783
VpaK11BI	GGWCC	3 cut(s)	85, 518, 704
VspI	ATTAAT	1 cut(s)	483
XceI	RCATGY	1 cut(s)	566
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	8 cut(s)	348, 354, 402, 453, 522, 636, 792, 900
Zsp2I	ATGCAT	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.