Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0010627

Physical Location & Seq

Genomic Coordinates Reverse (-)

37133759 .. 37134121

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG333400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAGTGGATTATGAGTGAGATTAAGAAAGAGAGGCCTAATATCGAATGGGTTTCTTCTCCGAGCACCAACAGTGAGCCTAAGAAGCTCAGGAAGAAATTGGAATGGTGGGTGTCTTTGGATGAAGAGGTGGACTTTCTCAGCGACGTCATTTGCATCGAAGTCGGAGCGGACCTCGAGGTGGAAGAGGCGGGAGAGGAAGAAAAAGCGGCCGAGATGATTGAGGAGCTTGCGGATTTGGTTGGTGTGGACGGAGATCAACCGCTTGTTGCCGCCATGCTGGCCGTCCTCTTACTCAAAGATGATGCCGGGGACGCGGCCGGACTTCTGCTCTTTCGCGGCGATGCTTTTGCCGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

120

Amino Acids

13.23

Weight (kDa)

4.09

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010627)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0249291
rosa_laevigata	RLG00000005450
rosa_multiflora	Rmu_co8431287.1_g000002 Rmu_co8465865.1_g000001 Rmu_sc0000494.1_g000014 Rmu_sc0002294.1_g000024 Rmu_sc0003546.1_g000006 Rmu_sc0004862.1_g000014 Rmu_sc0007849.1_g000013
rosa_rugosa	Rorug02G0216400 Rorug03G0167200 Rorug03G0238400
rosa_samantha	Rh1CG030900 Rh2BG308600 Rh2CG605600 Rh3BG323800 Rh3CG333400 Rh3DG335500 Rh4DG024500 Rh4DG377100 Rh6BG454500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AbsI	CCTCGAGG	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	170
AccII	CGCG	2 cut(s)	317, 339
AciI	CCGC	8 cut(s)	170, 191, 209, 233, 263, 273, 317, 339
AcoI	YGGCCR	3 cut(s)	210, 282, 318
AcyI	GRCGYC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	181
AluBI	AGCT	2 cut(s)	88, 229
AluI	AGCT	2 cut(s)	88, 229
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	351
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	4 cut(s)	35, 210, 282, 318
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	269
BcgI	CGANNNNNNTGC	3 cut(s)	145, 179, 332
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	351
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	4 cut(s)	210, 273, 318, 340
BlsI	GCNGC	4 cut(s)	211, 274, 319, 341
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	3 cut(s)	165, 295, 334
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
Bpu10I	CCTNAGC	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	103, 154
BseRI	GAGGAG	1 cut(s)	239
BseX3I	CGGCCG	2 cut(s)	210, 318
Bsh1236I	CGCG	2 cut(s)	317, 339
Bsh1285I	CGRYCG	2 cut(s)	213, 321
BshFI	GGCC	4 cut(s)	37, 212, 284, 320
BsiEI	CGRYCG	2 cut(s)	213, 321
BsiHKAI	GWGCWC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	309, 321, 354
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	4 cut(s)	37, 212, 284, 320
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	8 cut(s)	170, 191, 209, 233, 263, 273, 317, 339
BspANI	GGCC	4 cut(s)	37, 212, 284, 320
BspCNI	CTCAG	2 cut(s)	102, 153
BspFNI	CGCG	2 cut(s)	317, 339
BsrBI	CCGCTC	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	256
BssNI	GRCGYC	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	2 cut(s)	120, 180
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	231, 282
BstDEI	CTNAG	3 cut(s)	81, 89, 140
BstF5I	GGATG	1 cut(s)	127
BstFNI	CGCG	2 cut(s)	317, 339
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	256
BstMCI	CGRYCG	2 cut(s)	213, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 281, 314
BstSCI	CCNGG	1 cut(s)	308
BstUI	CGCG	2 cut(s)	317, 339
BstZI	CGGCCG	2 cut(s)	210, 318
BsuRI	GGCC	4 cut(s)	37, 212, 284, 320
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	231, 282
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	1 cut(s)	323
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	7 cut(s)	37, 79, 88, 212, 229, 284, 320
CviKI_1	RGCY	7 cut(s)	37, 79, 88, 212, 229, 284, 320
DdeI	CTNAG	3 cut(s)	81, 89, 140
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EaeI	YGGCCR	3 cut(s)	210, 282, 318
EagI	CGGCCG	2 cut(s)	210, 318
Eam1104I	CTCTTC	2 cut(s)	120, 180
EarI	CTCTTC	2 cut(s)	120, 180
EclXI	CGGCCG	2 cut(s)	210, 318
Eco147I	AGGCCT	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	172
Eco52I	CGGCCG	2 cut(s)	210, 318
Eco88I	CYCGRG	1 cut(s)	176
FaeI	CATG	1 cut(s)	280
FaiI	YATR	2 cut(s)	14, 278
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	276
FauI	CCCGC	1 cut(s)	184
Fnu4HI	GCNGC	4 cut(s)	210, 273, 318, 340
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	4 cut(s)	210, 273, 318, 340
GluI	GCNGC	4 cut(s)	210, 273, 318, 340
HaeIII	GGCC	4 cut(s)	37, 212, 284, 320
HapII	CCGG	3 cut(s)	309, 321, 354
HgaI	GACGC	1 cut(s)	323
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	280
HpaII	CCGG	3 cut(s)	309, 321, 354
Hpy166II	GTNNAC	2 cut(s)	133, 250
Hpy188I	TCNGA	2 cut(s)	63, 167
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	2 cut(s)	133, 250
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 281, 314
HpyF3I	CTNAG	3 cut(s)	81, 89, 140
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	167, 226
LpnPI	CCDG	4 cut(s)	76, 266, 322, 334
LweI	GCATC	3 cut(s)	165, 295, 334
MaeII	ACGT	1 cut(s)	147
MalI	GATC	1 cut(s)	258
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	1 cut(s)	256
MboII	GAAGA	5 cut(s)	48, 106, 137, 197, 212
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	8 cut(s)	27, 121, 172, 181, 185, 190, 217, 299
MseI	TTAA	1 cut(s)	24
MspI	CCGG	3 cut(s)	309, 321, 354
MspR9I	CCNGG	1 cut(s)	310
MvnI	CGCG	2 cut(s)	317, 339
MwoI	GCNNNNNNNGC	3 cut(s)	85, 281, 314
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	1 cut(s)	280
NmeAIII	GCCGAG	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	37
PkrI	GCNGC	4 cut(s)	211, 274, 319, 341
PspPI	GGNCC	1 cut(s)	172
PspXI	VCTCGAGB	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	4 cut(s)	210, 273, 318, 340
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	6 cut(s)	90, 132, 150, 177, 183, 231
SfaNI	GCATC	3 cut(s)	165, 295, 334
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	172
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	98
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	8 cut(s)	170, 191, 209, 233, 263, 273, 317, 339
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	45, 159, 177
TasI	AATT	1 cut(s)	98
TauI	GCSGC	4 cut(s)	212, 275, 320, 342
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	176
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.