Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010627

Physical Location & Seq

Genomic Coordinates Forward (+)

59479776 .. 59480949

Gene Structure 1174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG377100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGTGGATTATGAGTGAGATTAAGAAAGAGAGGCCTAATATCGAATGGGTTTCTTCTCCGAGCACCAACAGTGAGCCTAAGAAGCTCAGGAAGAAATTGGAATGTACTCTACGAGGAGTCGAGGTGGACTTTCTCAGCTACGTCATTTGCATCGAAGTCGGAGCGGACCTCGAGGTGGAAGAGGCGGGAGAGGAAGAAAAAGCGGCTGAGATGATTGAGGAGCTTGCGGATTTGGTTGGTGCAGACGGAGATCAACCGCTTGTTGCCGCCATGCTGGCCGTCGTCTTACTCAAAGATGATGCCGGGGACGCGGCCGGCCTTCTGCTCTTTCGCGGCGATGCTTTTGCCGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

119

Amino Acids

13.03

Weight (kDa)

4.22

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010627)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0249291
rosa_laevigata	RLG00000005450
rosa_multiflora	Rmu_co8431287.1_g000002 Rmu_co8465865.1_g000001 Rmu_sc0000494.1_g000014 Rmu_sc0002294.1_g000024 Rmu_sc0003546.1_g000006 Rmu_sc0004862.1_g000014 Rmu_sc0007849.1_g000013
rosa_rugosa	Rorug02G0216400 Rorug03G0167200 Rorug03G0238400
rosa_samantha	Rh1CG030900 Rh2BG308600 Rh2CG605600 Rh3BG323800 Rh3CG333400 Rh3DG335500 Rh4DG024500 Rh4DG377100 Rh6BG454500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	173
AccBSI	CCGCTC	1 cut(s)	167
AccII	CGCG	2 cut(s)	314, 336
AciI	CCGC	8 cut(s)	167, 188, 206, 230, 260, 270, 314, 336
AcoI	YGGCCR	2 cut(s)	279, 315
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	178
AluBI	AGCT	3 cut(s)	88, 141, 226
AluI	AGCT	3 cut(s)	88, 141, 226
Alw21I	GWGCWC	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	4 cut(s)	35, 279, 315, 319
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	266
BcgI	CGANNNNNNTGC	3 cut(s)	142, 176, 329
BcnI	CCSGG	1 cut(s)	307
BglI	GCCNNNNNGGC	1 cut(s)	278
BisI	GCNGC	4 cut(s)	207, 270, 315, 337
BlsI	GCNGC	4 cut(s)	208, 271, 316, 338
Bme1390I	CCNGG	1 cut(s)	307
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	3 cut(s)	162, 292, 331
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
Bpu10I	CCTNAGC	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse118I	RCCGGY	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	3 cut(s)	103, 151, 201
BseRI	GAGGAG	2 cut(s)	132, 236
BseX3I	CGGCCG	1 cut(s)	315
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	2 cut(s)	314, 336
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	4 cut(s)	37, 281, 317, 321
BsiEI	CGRYCG	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	306, 318
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	4 cut(s)	37, 281, 317, 321
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	8 cut(s)	167, 188, 206, 230, 260, 270, 314, 336
BspANI	GGCC	4 cut(s)	37, 281, 317, 321
BspCNI	CTCAG	3 cut(s)	102, 150, 202
BspFNI	CGCG	2 cut(s)	314, 336
BsrBI	CCGCTC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	177
BstC8I	GCNNGC	3 cut(s)	228, 279, 319
BstDEI	CTNAG	4 cut(s)	81, 89, 137, 210
BstFNI	CGCG	2 cut(s)	314, 336
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 278, 311
BstSCI	CCNGG	1 cut(s)	305
BstUI	CGCG	2 cut(s)	314, 336
BstZI	CGGCCG	1 cut(s)	315
BsuRI	GGCC	4 cut(s)	37, 281, 317, 321
BtgZI	GCGATG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	3 cut(s)	228, 279, 319
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	169
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	9 cut(s)	37, 79, 88, 141, 209, 226, 281, 317, 321
CviKI_1	RGCY	9 cut(s)	37, 79, 88, 141, 209, 226, 281, 317, 321
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	4 cut(s)	81, 89, 137, 210
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	2 cut(s)	279, 315
EagI	CGGCCG	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EclXI	CGGCCG	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	169
Eco52I	CGGCCG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	173
FaeI	CATG	1 cut(s)	277
FaiI	YATR	2 cut(s)	14, 275
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	1 cut(s)	273
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	207, 270, 315, 337
FseI	GGCCGGCC	1 cut(s)	321
Fsp4HI	GCNGC	4 cut(s)	207, 270, 315, 337
GluI	GCNGC	4 cut(s)	207, 270, 315, 337
HaeIII	GGCC	4 cut(s)	37, 281, 317, 321
HapII	CCGG	2 cut(s)	306, 318
HgaI	GACGC	1 cut(s)	320
Hin1II	CATG	1 cut(s)	277
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	2 cut(s)	306, 318
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	63, 164
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	153, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 278, 311
HpyF3I	CTNAG	4 cut(s)	81, 89, 137, 210
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	277
KroI	GCCGGC	1 cut(s)	317
KroNI	GCCGGC	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	2 cut(s)	164, 223
LpnPI	CCDG	4 cut(s)	76, 263, 319, 331
LweI	GCATC	3 cut(s)	162, 292, 331
MaeII	ACGT	1 cut(s)	144
MalI	GATC	1 cut(s)	255
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	1 cut(s)	253
MboII	GAAGA	4 cut(s)	48, 106, 194, 209
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	8 cut(s)	27, 110, 118, 169, 178, 182, 187, 214
MroNI	GCCGGC	1 cut(s)	317
MseI	TTAA	1 cut(s)	24
MspI	CCGG	2 cut(s)	306, 318
MspR9I	CCNGG	1 cut(s)	307
MvnI	CGCG	2 cut(s)	314, 336
MwoI	GCNNNNNNNGC	3 cut(s)	85, 278, 311
NaeI	GCCGGC	1 cut(s)	319
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	1 cut(s)	253
NgoMIV	GCCGGC	1 cut(s)	317
NlaIII	CATG	1 cut(s)	277
PaeR7I	CTCGAG	1 cut(s)	173
PceI	AGGCCT	1 cut(s)	37
PdiI	GCCGGC	1 cut(s)	319
PkrI	GCNGC	4 cut(s)	208, 271, 316, 338
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	169
PspXI	VCTCGAGB	1 cut(s)	173
RigI	GGCCGGCC	1 cut(s)	321
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	4 cut(s)	207, 270, 315, 337
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	7 cut(s)	90, 129, 143, 147, 174, 180, 228
SfaNI	GCATC	3 cut(s)	162, 292, 331
Sfr274I	CTCGAG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	169
SlaI	CTCGAG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	98
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	8 cut(s)	167, 188, 206, 230, 260, 270, 314, 336
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	305
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	4 cut(s)	45, 123, 156, 174
TasI	AATT	1 cut(s)	98
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	4 cut(s)	209, 272, 317, 339
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	79
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.