Rmu_sc0007849.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007849.1
OG0010627
Physical Location & Seq
Reverse (-)
35038 .. 35463
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007849.1_g000013.1.cds

Sequence Viewer

Length: 384 bp
atggtgaagcttaaagggggtggaggctctgtaactcagcctcatagctccggtgaacttaccagtgtggagtttgacctccaggactctgtcttgaaaatcctcgaagaactcagatccatgaaggcggaggctacgaacctgcagctccagcaaggttcacctcagttgaacgttggatccatacctatccctgttggtttagcagagggtagctctatggggatatcggcgtcgtcgactatggctacatcggcttctattcaagttgaaggagggggtagcacaactaaacccaatcattctagctctagttttcctttgaacttaaatgataatgatgtgatattgggtttgctagtgatcactatgctgaaatggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.15

Weight (kDa)

4.95

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
AccI GTMKAC 1 cut(s) 239
AciI CCGC 1 cut(s) 128
AclI AACGTT 1 cut(s) 174
AclWI GGATC 3 cut(s) 111, 174, 187
AcyI GRCGYC 1 cut(s) 233
AgsI TTSAA 5 cut(s) 97, 172, 266, 272, 325
AjnI CCWGG 1 cut(s) 81
AloI GAACNNNNNNTCC 2 cut(s) 164, 196
AluBI AGCT 5 cut(s) 10, 48, 148, 216, 309
AluI AGCT 5 cut(s) 10, 48, 148, 216, 309
AlwI GGATC 3 cut(s) 111, 174, 187
ApeKI GCWGC 1 cut(s) 145
AsuHPI GGTGA 3 cut(s) 16, 65, 153
BamHI GGATCC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 83
BclI TGATCA 1 cut(s) 363
BfaI CTAG 3 cut(s) 306, 312, 359
BfmI CTRYAG 1 cut(s) 143
BfuAI ACCTGC 1 cut(s) 150
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 83
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpmI CTGGAG 2 cut(s) 65, 134
BsaHI GRCGYC 1 cut(s) 233
BsaWI WCCGGW 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bse1I ACTGG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 83
BseMII CTCAG 3 cut(s) 50, 127, 179
BseNI ACTGG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 157
BsiSI CCGG 1 cut(s) 51
Bsp143I GATC 3 cut(s) 116, 179, 363
BspACI CCGC 1 cut(s) 128
BspCNI CTCAG 3 cut(s) 49, 126, 178
BspLI GGNNCC 1 cut(s) 181
BspMAI CTGCAG 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 3 cut(s) 111, 174, 187
BsrI ACTGG 1 cut(s) 63
BssMI GATC 3 cut(s) 116, 179, 363
BssNI GRCGYC 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 233
BstDEI CTNAG 3 cut(s) 36, 113, 165
BstKTI GATC 3 cut(s) 119, 182, 366
BstMBI GATC 3 cut(s) 116, 179, 363
BstMWI GCNNNNNNNGC 2 cut(s) 151, 254
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 157
BstX2I RGATCY 2 cut(s) 116, 179
BstYI RGATCY 2 cut(s) 116, 179
BtsIMutI CAGTG 1 cut(s) 70
BveI ACCTGC 1 cut(s) 150
CseI GACGC 1 cut(s) 222
CviAII CATG 1 cut(s) 121
DdeI CTNAG 3 cut(s) 36, 113, 165
DpnI GATC 3 cut(s) 118, 181, 365
DpnII GATC 3 cut(s) 116, 179, 363
EciI GGCGGA 1 cut(s) 143
Eco32I GATATC 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 81
EcoRV GATATC 1 cut(s) 228
FaeI CATG 1 cut(s) 124
FaiI YATR 6 cut(s) 45, 122, 185, 221, 245, 371
FatI CATG 1 cut(s) 120
FbaI TGATCA 1 cut(s) 363
FblI GTMKAC 1 cut(s) 239
Fnu4HI GCNGC 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 3 cut(s) 306, 312, 359
GluI GCNGC 1 cut(s) 146
GsuI CTGGAG 2 cut(s) 65, 134
HapII CCGG 1 cut(s) 51
HgaI GACGC 1 cut(s) 222
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 1 cut(s) 124
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 51
HphI GGTGA 3 cut(s) 16, 65, 153
Hpy166II GTNNAC 3 cut(s) 56, 161, 240
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 3 cut(s) 56, 161, 240
Hpy99I CGWCG 2 cut(s) 238, 241
HpyAV CCTTC 2 cut(s) 118, 266
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 254
HpyF3I CTNAG 3 cut(s) 36, 113, 165
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 3 cut(s) 116, 179, 363
LmnI GCTCC 2 cut(s) 53, 153
LpnPI CCDG 7 cut(s) 64, 68, 76, 95, 155, 164, 207
Lsp1109I GCAGC 1 cut(s) 157
MaeI CTAG 3 cut(s) 306, 312, 359
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 31
MalI GATC 3 cut(s) 118, 181, 365
MboI GATC 3 cut(s) 116, 179, 363
MboII GAAGA 1 cut(s) 119
MflI RGATCY 2 cut(s) 116, 179
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 8 cut(s) 17, 51, 89, 113, 124, 174, 202, 269
MseI TTAA 2 cut(s) 12, 329
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 151, 254
NdeII GATC 3 cut(s) 116, 179, 363
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PflFI GACNNNGTC 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 81
PkrI GCNGC 1 cut(s) 147
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp1406I AACGTT 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 181
PstI CTGCAG 1 cut(s) 147
PsuI RGATCY 2 cut(s) 116, 179
PsyI GACNNNGTC 1 cut(s) 89
SalI GTCGAC 1 cut(s) 238
SaqAI TTAA 2 cut(s) 12, 329
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 3 cut(s) 116, 179, 363
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 83
SfcI CTRYAG 1 cut(s) 143
SsiI CCGC 1 cut(s) 128
SspMI CTAG 3 cut(s) 306, 312, 359
StyD4I CCNGG 1 cut(s) 81
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 105, 239
Tru1I TTAA 2 cut(s) 12, 329
Tru9I TTAA 2 cut(s) 12, 329
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 70
Tth111I GACNNNGTC 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 239
XspI CTAG 3 cut(s) 306, 312, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.