Rh3DG335500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0010627
Physical Location & Seq
Reverse (-)
37359271 .. 37359513
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG335500.1

Sequence Viewer

Length: 243 bp
ATGAAGAGGTGGACTTTCTCAGCGACGTCATTTGCATCGAAGTCGGAGCGGGACCTCGAGGTGGAAGAGGCGGGAGAGGAAGAAAAAGCGGCCAAGATGATTGAGGAGCTTGCGGATTTGGTTGGTGCGGACGGAGATCAACCGCTTGTTGCCGCCATGCTGGCCGTCGTCTTACTCAAAGATGATGCCGGGGACGCGGCCGGCCTTCTGCTCTTTCGCGGCGATGCTTTTGCCGGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.48

Weight (kDa)

4.22

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
AbsI CCTCGAGG 1 cut(s) 56
AccBSI CCGCTC 1 cut(s) 49
AccII CGCG 2 cut(s) 197, 219
AciI CCGC 9 cut(s) 49, 71, 89, 113, 128, 143, 153, 197, 219
AcoI YGGCCR 3 cut(s) 90, 162, 198
AcyI GRCGYC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 61
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 231
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 4 cut(s) 90, 162, 198, 202
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 52
BceAI ACGGC 1 cut(s) 149
BcgI CGANNNNNNTGC 3 cut(s) 24, 58, 212
BcnI CCSGG 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 231
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 4 cut(s) 90, 153, 198, 220
BlsI GCNGC 4 cut(s) 91, 154, 199, 221
Bme1390I CCNGG 1 cut(s) 190
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 3 cut(s) 44, 175, 214
BpuMI CCSGG 1 cut(s) 190
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse118I RCCGGY 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 119
BseX3I CGGCCG 1 cut(s) 198
Bsh1236I CGCG 2 cut(s) 197, 219
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 4 cut(s) 92, 164, 200, 204
BsiEI CGRYCG 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 3 cut(s) 189, 201, 234
BslFI GGGAC 2 cut(s) 65, 206
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 231
BsmFI GGGAC 2 cut(s) 65, 206
BsnI GGCC 4 cut(s) 92, 164, 200, 204
BsoBI CYCGRG 1 cut(s) 56
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 9 cut(s) 49, 71, 89, 113, 128, 143, 153, 197, 219
BspANI GGCC 4 cut(s) 92, 164, 200, 204
BspCNI CTCAG 1 cut(s) 32
BspFNI CGCG 2 cut(s) 197, 219
BspLI GGNNCC 1 cut(s) 53
BsrBI CCGCTC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 111, 162, 202
BstDEI CTNAG 1 cut(s) 19
BstFNI CGCG 2 cut(s) 197, 219
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 1 cut(s) 136
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 161, 194
BstSCI CCNGG 1 cut(s) 188
BstUI CGCG 2 cut(s) 197, 219
BstZI CGGCCG 1 cut(s) 198
BsuRI GGCC 4 cut(s) 92, 164, 200, 204
BtgZI GCGATG 1 cut(s) 237
Cac8I GCNNGC 3 cut(s) 111, 162, 202
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 52
CseI GACGC 1 cut(s) 203
CviAII CATG 1 cut(s) 157
CviJI RGCY 5 cut(s) 92, 109, 164, 200, 204
CviKI_1 RGCY 5 cut(s) 92, 109, 164, 200, 204
DdeI CTNAG 1 cut(s) 19
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EaeI YGGCCR 3 cut(s) 90, 162, 198
EagI CGGCCG 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
EclXI CGGCCG 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 52
Eco52I CGGCCG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 52
FaeI CATG 1 cut(s) 160
FaiI YATR 1 cut(s) 158
FaqI GGGAC 2 cut(s) 65, 206
FatI CATG 1 cut(s) 156
FauI CCCGC 2 cut(s) 42, 64
Fnu4HI GCNGC 4 cut(s) 90, 153, 198, 220
FseI GGCCGGCC 1 cut(s) 204
Fsp4HI GCNGC 4 cut(s) 90, 153, 198, 220
GluI GCNGC 4 cut(s) 90, 153, 198, 220
HaeIII GGCC 4 cut(s) 92, 164, 200, 204
HapII CCGG 3 cut(s) 189, 201, 234
HgaI GACGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 1 cut(s) 160
HpaII CCGG 3 cut(s) 189, 201, 234
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 2 cut(s) 28, 170
HpyAV CCTTC 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 194
HpyF3I CTNAG 1 cut(s) 19
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 1 cut(s) 160
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 2 cut(s) 46, 106
LpnPI CCDG 3 cut(s) 146, 202, 214
LweI GCATC 3 cut(s) 44, 175, 214
MaeII ACGT 1 cut(s) 26
MalI GATC 1 cut(s) 138
MbiI CCGCTC 1 cut(s) 49
MboI GATC 1 cut(s) 136
MboII GAAGA 3 cut(s) 16, 77, 92
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 5 cut(s) 52, 61, 65, 70, 97
MroNI GCCGGC 1 cut(s) 200
MspI CCGG 3 cut(s) 189, 201, 234
MspR9I CCNGG 1 cut(s) 190
MvnI CGCG 2 cut(s) 197, 219
MwoI GCNNNNNNNGC 2 cut(s) 161, 194
NaeI GCCGGC 1 cut(s) 202
NciI CCSGG 1 cut(s) 190
NdeII GATC 1 cut(s) 136
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 56
PdiI GCCGGC 1 cut(s) 202
PkrI GCNGC 4 cut(s) 91, 154, 199, 221
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PspXI VCTCGAGB 1 cut(s) 56
RigI GGCCGGCC 1 cut(s) 204
SatI GCNGC 4 cut(s) 90, 153, 198, 220
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 190
SetI ASST 5 cut(s) 11, 29, 57, 63, 111
SfaNI GCATC 3 cut(s) 44, 175, 214
Sfr274I CTCGAG 1 cut(s) 56
SinI GGWCC 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SsiI CCGC 9 cut(s) 49, 71, 89, 113, 128, 143, 153, 197, 219
StyD4I CCNGG 1 cut(s) 188
TaiI ACGT 1 cut(s) 29
TaqI TCGA 2 cut(s) 38, 57
TauI GCSGC 4 cut(s) 92, 155, 200, 222
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 56
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.