Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010627

Physical Location & Seq

Genomic Coordinates Reverse (-)

67717229 .. 67718387

Gene Structure 1159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005450

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGTGGACTGGGAGTGAGATTAAGAAAGAGAGGCCTGATATCGAATGGGTTTCTTCTCCGAGCACCAACAGTGAGCCTAAGAAGCTCAGGAAGAAATTGGAATGGTGGGTATCTTTGGATGAAGAGGTGGACTTTCTCAGCGATGTCATCTGCATCGAAGTCGGACCGGACCTCGAGGTGGAAGAGGCGGGAGAGGAAGAAAAAGCGGTCGAGATGATTGAGGAGCTTGCGGATTTGGTTGGTGCGAACGGAGATCAACCGCTTGTTGCCGCCATGTTGGCCGTCCTCTTACTCAAAGATGATGCCGGGGACCCGGCTGGCCTTCTGCTCTTTCGCGGCGATGCTTTTTGCCGGAGACTAAGCGCGGGACGACAAGGATGGTCTGGTAGTATTTCGGGTCGGGTCTGGGGAAGGACTCCGGTTTGGAATCGTCGTCGACGAGAGCGGCTGTGGCATATTGGGTGCAGTGGCGGAGCTGGAGGGGTGCGGAGAGGGTGGAGGCGCAACGCCACTGGAGGAGGAACATTTTGGATTTGGGGTCGGCGAGTAGGACACTGGGAGTGGGAGATAAATGTCAAATGGGGTTTAAGAGGGATTAGAAGTCATGTTCGAGAGAAGAGAGAGAAGAGAAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

214

Amino Acids

24.27

Weight (kDa)

7.74

Isoelectric Point (pI)

55.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010627)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0249291
rosa_laevigata	RLG00000005450
rosa_multiflora	Rmu_co8431287.1_g000002 Rmu_co8465865.1_g000001 Rmu_sc0000494.1_g000014 Rmu_sc0002294.1_g000024 Rmu_sc0003546.1_g000006 Rmu_sc0004862.1_g000014 Rmu_sc0007849.1_g000013
rosa_rugosa	Rorug02G0216400 Rorug03G0167200 Rorug03G0238400
rosa_samantha	Rh1CG030900 Rh2BG308600 Rh2CG605600 Rh3BG323800 Rh3CG333400 Rh3DG335500 Rh4DG024500 Rh4DG377100 Rh6BG454500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	448
AccI	GTMKAC	1 cut(s)	439
AccII	CGCG	2 cut(s)	339, 368
AcoI	YGGCCR	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	181
AluBI	AGCT	3 cut(s)	88, 229, 479
AluI	AGCT	3 cut(s)	88, 229, 479
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	3 cut(s)	35, 282, 322
AspLEI	GCGC	2 cut(s)	368, 507
AspS9I	GGNCC	3 cut(s)	167, 172, 313
AsuC2I	CCSGG	2 cut(s)	310, 317
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	3 cut(s)	167, 172, 313
Bbv12I	GWGCWC	1 cut(s)	68
BccI	CCATC	1 cut(s)	375
BceAI	ACGGC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BcnI	CCSGG	2 cut(s)	310, 317
BcoDI	GTCTC	1 cut(s)	352
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	3 cut(s)	273, 340, 449
BlsI	GCNGC	3 cut(s)	274, 341, 450
Bme1390I	CCNGG	2 cut(s)	310, 317
Bme18I	GGWCC	3 cut(s)	167, 172, 313
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	3 cut(s)	167, 172, 313
BmiI	GGNNCC	2 cut(s)	314, 315
BmrFI	CCNGG	2 cut(s)	310, 317
BmrI	ACTGGG	2 cut(s)	21, 568
BmsI	GCATC	3 cut(s)	165, 295, 334
BmuI	ACTGGG	2 cut(s)	21, 568
BpmI	CTGGAG	2 cut(s)	501, 537
Bpu10I	CCTNAGC	1 cut(s)	89
BpuMI	CCSGG	2 cut(s)	310, 317
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	2 cut(s)	169, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	3 cut(s)	16, 520, 563
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	2 cut(s)	127, 386
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	103, 154
BseNI	ACTGG	3 cut(s)	16, 520, 563
BseRI	GAGGAG	2 cut(s)	239, 534
BsgI	GTGCAG	1 cut(s)	487
Bsh1236I	CGCG	2 cut(s)	339, 368
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	37, 284, 324
BsiEI	CGRYCG	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	5 cut(s)	170, 309, 317, 355, 422
BslFI	GGGAC	2 cut(s)	326, 384
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	2 cut(s)	326, 384
BsnI	GGCC	3 cut(s)	37, 284, 324
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	256
BspANI	GGCC	3 cut(s)	37, 284, 324
BspCNI	CTCAG	2 cut(s)	102, 153
BspFNI	CGCG	2 cut(s)	339, 368
BspLI	GGNNCC	2 cut(s)	314, 315
BsrBI	CCGCTC	1 cut(s)	448
BsrI	ACTGG	3 cut(s)	16, 520, 563
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	4 cut(s)	120, 180, 614, 623
BstC8I	GCNNGC	2 cut(s)	231, 322
BstDEI	CTNAG	4 cut(s)	81, 89, 140, 362
BstF5I	GGATG	2 cut(s)	127, 386
BstFNI	CGCG	2 cut(s)	339, 368
BstHHI	GCGC	2 cut(s)	368, 507
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	256
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 281, 454
BstSCI	CCNGG	2 cut(s)	308, 315
BstUI	CGCG	2 cut(s)	339, 368
BsuRI	GGCC	3 cut(s)	37, 284, 324
BtgZI	GCGATG	2 cut(s)	159, 357
BtsCI	GGATG	2 cut(s)	127, 386
BtsI	GCAGTG	1 cut(s)	475
BtsIMutI	CAGTG	4 cut(s)	79, 475, 513, 556
Cac8I	GCNNGC	2 cut(s)	231, 322
CfoI	GCGC	2 cut(s)	368, 507
Cfr13I	GGNCC	3 cut(s)	167, 172, 313
CpoI	CGGWCCG	1 cut(s)	167
CspI	CGGWCCG	1 cut(s)	167
CviAII	CATG	2 cut(s)	277, 608
CviJI	RGCY	9 cut(s)	37, 79, 88, 229, 284, 320, 324, 451, 479
CviKI_1	RGCY	9 cut(s)	37, 79, 88, 229, 284, 320, 324, 451, 479
DdeI	CTNAG	4 cut(s)	81, 89, 140, 362
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	4 cut(s)	120, 180, 614, 623
EarI	CTCTTC	4 cut(s)	120, 180, 614, 623
EciI	GGCGGA	1 cut(s)	489
Eco147I	AGGCCT	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	43
Eco47I	GGWCC	3 cut(s)	167, 172, 313
Eco88I	CYCGRG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	43
FaeI	CATG	2 cut(s)	280, 611
FaiI	YATR	3 cut(s)	278, 459, 609
FaqI	GGGAC	2 cut(s)	326, 384
FatI	CATG	2 cut(s)	276, 607
FauI	CCCGC	2 cut(s)	184, 361
FblI	GTMKAC	1 cut(s)	439
Fnu4HI	GCNGC	3 cut(s)	273, 340, 449
FokI	GGATG	2 cut(s)	134, 393
Fsp4HI	GCNGC	3 cut(s)	273, 340, 449
GlaI	GCGC	2 cut(s)	367, 506
GluI	GCNGC	3 cut(s)	273, 340, 449
GsuI	CTGGAG	2 cut(s)	501, 537
HaeIII	GGCC	3 cut(s)	37, 284, 324
HapII	CCGG	5 cut(s)	170, 309, 317, 355, 422
HhaI	GCGC	2 cut(s)	368, 507
Hin1II	CATG	2 cut(s)	280, 611
Hin6I	GCGC	2 cut(s)	366, 505
HinP1I	GCGC	2 cut(s)	366, 505
HincII	GTYRAC	1 cut(s)	440
HindII	GTYRAC	1 cut(s)	440
HinfI	GANTC	2 cut(s)	418, 430
HpaII	CCGG	5 cut(s)	170, 309, 317, 355, 422
Hpy166II	GTNNAC	3 cut(s)	9, 133, 440
Hpy188I	TCNGA	2 cut(s)	63, 167
Hpy188III	TCNNGA	3 cut(s)	91, 214, 614
Hpy8I	GTNNAC	3 cut(s)	9, 133, 440
Hpy99I	CGWCG	3 cut(s)	438, 441, 444
HpyAV	CCTTC	2 cut(s)	335, 408
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4V	TGCA	2 cut(s)	156, 468
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 281, 454
HpyF3I	CTNAG	4 cut(s)	81, 89, 140, 362
Hsp92II	CATG	2 cut(s)	280, 611
HspAI	GCGC	2 cut(s)	366, 505
KflI	GGGWCCC	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	226, 476
LweI	GCATC	3 cut(s)	165, 295, 334
MalI	GATC	1 cut(s)	258
MbiI	CCGCTC	1 cut(s)	448
MboI	GATC	1 cut(s)	256
MboII	GAAGA	7 cut(s)	48, 106, 137, 197, 212, 631, 640
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	145
MseI	TTAA	2 cut(s)	24, 590
MspI	CCGG	5 cut(s)	170, 309, 317, 355, 422
MspR9I	CCNGG	2 cut(s)	310, 317
MvnI	CGCG	2 cut(s)	339, 368
MwoI	GCNNNNNNNGC	3 cut(s)	85, 281, 454
NciI	CCSGG	2 cut(s)	310, 317
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	280, 611
NlaIV	GGNNCC	2 cut(s)	314, 315
PaeR7I	CTCGAG	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	3 cut(s)	274, 341, 450
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PpuMI	RGGWCCY	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	314, 315
PspPI	GGNCC	3 cut(s)	167, 172, 313
PspPPI	RGGWCCY	1 cut(s)	313
PspXI	VCTCGAGB	1 cut(s)	176
Rsr2I	CGGWCCG	1 cut(s)	167
RsrII	CGGWCCG	1 cut(s)	167
SalI	GTCGAC	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	24, 590
SatI	GCNGC	3 cut(s)	273, 340, 449
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	3 cut(s)	167, 172, 313
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	2 cut(s)	310, 317
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	6 cut(s)	90, 132, 177, 183, 231, 481
SfaNI	GCATC	3 cut(s)	165, 295, 334
Sfr274I	CTCGAG	1 cut(s)	176
SgrDI	CGTCGACG	1 cut(s)	438
SinI	GGWCC	3 cut(s)	167, 172, 313
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	98
SseBI	AGGCCT	1 cut(s)	37
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	2 cut(s)	308, 315
TaaI	ACNGT	1 cut(s)	74
TaqI	TCGA	6 cut(s)	45, 159, 177, 213, 439, 613
TasI	AATT	1 cut(s)	98
TauI	GCSGC	3 cut(s)	275, 342, 451
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	2 cut(s)	24, 590
Tru9I	TTAA	2 cut(s)	24, 590
TscAI	CASTG	4 cut(s)	79, 475, 520, 563
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	4 cut(s)	79, 475, 520, 563
VpaK11BI	GGWCC	3 cut(s)	167, 172, 313
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.