Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8431287.1

Orthogroup ID

OG0010627

Physical Location & Seq

Genomic Coordinates Reverse (-)

779 .. 1345

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8431287.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggtgaagcttaaggggggtggaggcgctgcgcctcaacctcacagctccggcgaactgaccagtgtggagtttgatctccaggtccataaagatgaaacagcggccaagttttgcgctctacaagattcggtagctactctgcgttccgagatcctcgaagaactcagatccatgagagcggaggctaagactatgcgaacccagcaaggttcacctcatttgaacgttggctccattcaaatcccagttgggtcggcagggggtaattctatggggacctcagcctcatcaattatggctacgtcggcatcaattcaaattgaggaagggggtagtacatctaaacccaattcctctagctccagttttcccttaaatttaaatgataatgatgtgattttggggtttgctagtgaaaactattcgaaaatgattaaggctaccaatgttatgcaaacaactagtgtggttatgtgtggatctgatgctactaataaattgggtcttaaagttgttggatatatgcctgggctctaccagctcgtcctttcatggacaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

19.72

Weight (kDa)

6.29

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010627)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0249291
rosa_laevigata	RLG00000005450
rosa_multiflora	Rmu_co8431287.1_g000002 Rmu_co8465865.1_g000001 Rmu_sc0000494.1_g000014 Rmu_sc0002294.1_g000024 Rmu_sc0003546.1_g000006 Rmu_sc0004862.1_g000014 Rmu_sc0007849.1_g000013
rosa_rugosa	Rorug02G0216400 Rorug03G0167200 Rorug03G0238400
rosa_samantha	Rh1CG030900 Rh2BG308600 Rh2CG605600 Rh3BG323800 Rh3CG333400 Rh3DG335500 Rh4DG024500 Rh4DG377100 Rh6BG454500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	182
AciI	CCGC	2 cut(s)	104, 182
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	3 cut(s)	148, 165, 490
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	379
AfaI	GTAC	1 cut(s)	340
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	226, 242, 320
AhlI	ACTAGT	1 cut(s)	464
AjnI	CCWGG	2 cut(s)	81, 529
AloI	GAACNNNNNNTCC	2 cut(s)	218, 250
AluBI	AGCT	5 cut(s)	10, 48, 137, 363, 544
AluI	AGCT	5 cut(s)	10, 48, 137, 363, 544
AlwI	GGATC	3 cut(s)	148, 165, 490
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	3 cut(s)	29, 34, 119
AspS9I	GGNCC	2 cut(s)	85, 279
AsuHPI	GGTGA	2 cut(s)	16, 207
AsuII	TTCGAA	1 cut(s)	428
AvaII	GGWCC	2 cut(s)	85, 279
BanII	GRGCYC	1 cut(s)	537
BbvCI	CCTCAGC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	16
BciT130I	CCWGG	2 cut(s)	83, 531
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	3 cut(s)	360, 414, 465
BfoI	RGCGCY	1 cut(s)	30
BfrI	CTTAAG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	30, 105
BlsI	GCNGC	2 cut(s)	31, 106
Bme1390I	CCNGG	2 cut(s)	83, 531
Bme18I	GGWCC	2 cut(s)	85, 279
BmgT120I	GGNCC	2 cut(s)	85, 279
BmiI	GGNNCC	2 cut(s)	235, 280
BmrFI	CCNGG	2 cut(s)	83, 531
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	2 cut(s)	320, 478
BmuI	ACTGGG	1 cut(s)	242
BpmI	CTGGAG	2 cut(s)	65, 349
Bpu10I	CCTNAGC	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	530
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bse1I	ACTGG	3 cut(s)	63, 248, 366
BseBI	CCWGG	2 cut(s)	83, 531
BseDI	CCNNGG	1 cut(s)	530
BseMII	CTCAG	2 cut(s)	181, 297
BseNI	ACTGG	3 cut(s)	63, 248, 366
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	204
BshFI	GGCC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	107
Bsp119I	TTCGAA	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	4 cut(s)	76, 153, 170, 482
BspACI	CCGC	2 cut(s)	104, 182
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	2 cut(s)	180, 296
BspLI	GGNNCC	2 cut(s)	235, 280
BspPI	GGATC	3 cut(s)	148, 165, 490
BspT104I	TTCGAA	1 cut(s)	428
BspTI	CTTAAG	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	182
BsrI	ACTGG	3 cut(s)	63, 248, 366
BssECI	CCNNGG	1 cut(s)	530
BssMI	GATC	4 cut(s)	76, 153, 170, 482
Bst2UI	CCWGG	2 cut(s)	83, 531
BstAFI	CTTAAG	1 cut(s)	11
BstBI	TTCGAA	1 cut(s)	428
BstDEI	CTNAG	3 cut(s)	167, 189, 283
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	3 cut(s)	29, 34, 119
BstKTI	GATC	4 cut(s)	79, 156, 173, 485
BstMBI	GATC	4 cut(s)	76, 153, 170, 482
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 308, 541
BstNI	CCWGG	2 cut(s)	83, 531
BstSCI	CCNGG	2 cut(s)	81, 529
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	3 cut(s)	153, 170, 482
BstYI	RGATCY	3 cut(s)	153, 170, 482
BsuRI	GGCC	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	70
CfoI	GCGC	3 cut(s)	29, 34, 119
Cfr13I	GGNCC	2 cut(s)	85, 279
Csp6I	GTAC	1 cut(s)	339
CspCI	CAANNNNNGTGG	2 cut(s)	450, 485
CviAII	CATG	2 cut(s)	175, 555
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	3 cut(s)	167, 189, 283
DpnI	GATC	4 cut(s)	78, 155, 172, 484
DpnII	GATC	4 cut(s)	76, 153, 170, 482
DraI	TTTAAA	1 cut(s)	384
EaeI	YGGCCR	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	537
Eco47I	GGWCC	2 cut(s)	85, 279
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	81, 529
EcoT38I	GRGCYC	1 cut(s)	537
FaeI	CATG	2 cut(s)	178, 558
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	2 cut(s)	174, 554
Fnu4HI	GCNGC	2 cut(s)	30, 105
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	2 cut(s)	30, 105
FspBI	CTAG	3 cut(s)	360, 414, 465
GlaI	GCGC	3 cut(s)	28, 33, 118
GluI	GCNGC	2 cut(s)	30, 105
GsaI	CCCAGC	1 cut(s)	208
GsuI	CTGGAG	2 cut(s)	65, 349
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	3 cut(s)	29, 34, 119
Hin1II	CATG	2 cut(s)	178, 558
Hin6I	GCGC	3 cut(s)	27, 32, 117
HinP1I	GCGC	3 cut(s)	27, 32, 117
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	2 cut(s)	16, 207
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	151, 170, 487
Hpy8I	GTNNAC	1 cut(s)	215
Hpy99I	CGWCG	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	323
HpyCH4IV	ACGT	2 cut(s)	228, 305
HpyCH4V	TGCA	1 cut(s)	457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 308, 541
HpyF3I	CTNAG	3 cut(s)	167, 189, 283
HpySE526I	ACGT	2 cut(s)	228, 305
Hsp92II	CATG	2 cut(s)	178, 558
HspAI	GCGC	3 cut(s)	27, 32, 117
Kzo9I	GATC	4 cut(s)	76, 153, 170, 482
LmnI	GCTCC	3 cut(s)	53, 239, 368
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	2 cut(s)	320, 478
MaeI	CTAG	3 cut(s)	360, 414, 465
MaeII	ACGT	2 cut(s)	228, 305
MalI	GATC	4 cut(s)	78, 155, 172, 484
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	4 cut(s)	76, 153, 170, 482
MboII	GAAGA	1 cut(s)	173
MflI	RGATCY	3 cut(s)	153, 170, 482
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	7 cut(s)	268, 294, 315, 321, 352, 379, 500
MmeI	TCCRAC	1 cut(s)	499
MseI	TTAA	5 cut(s)	12, 377, 383, 438, 510
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	104
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	83, 531
MteI	GCGCNGCGC	1 cut(s)	30
MvaI	CCWGG	2 cut(s)	83, 531
MwoI	GCNNNNNNNGC	3 cut(s)	205, 308, 541
NdeII	GATC	4 cut(s)	76, 153, 170, 482
NlaIII	CATG	2 cut(s)	178, 558
NlaIV	GGNNCC	2 cut(s)	235, 280
NspV	TTCGAA	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	31, 106
PpuMI	RGGWCCY	1 cut(s)	279
Psp1406I	AACGTT	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	279
Psp6I	CCWGG	2 cut(s)	81, 529
PspFI	CCCAGC	1 cut(s)	204
PspGI	CCWGG	2 cut(s)	81, 529
PspN4I	GGNNCC	2 cut(s)	235, 280
PspPI	GGNCC	2 cut(s)	85, 279
PspPPI	RGGWCCY	1 cut(s)	279
PsuI	RGATCY	3 cut(s)	153, 170, 482
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	5 cut(s)	12, 377, 383, 438, 510
SatI	GCNGC	2 cut(s)	30, 105
Sau3AI	GATC	4 cut(s)	76, 153, 170, 482
Sau96I	GGNCC	2 cut(s)	85, 279
ScrFI	CCNGG	2 cut(s)	83, 531
SduI	GDGCHC	1 cut(s)	537
SfaNI	GCATC	2 cut(s)	320, 478
SfuI	TTCGAA	1 cut(s)	428
SinI	GGWCC	2 cut(s)	85, 279
SmiI	ATTTAAAT	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SpeI	ACTAGT	1 cut(s)	464
Sse9I	AATT	7 cut(s)	268, 294, 315, 321, 352, 379, 500
SsiI	CCGC	2 cut(s)	104, 182
SspMI	CTAG	3 cut(s)	360, 414, 465
StyD4I	CCNGG	2 cut(s)	81, 529
SwaI	ATTTAAAT	1 cut(s)	384
TaiI	ACGT	2 cut(s)	231, 308
TaqI	TCGA	2 cut(s)	159, 428
TasI	AATT	7 cut(s)	268, 294, 315, 321, 352, 379, 500
TatI	WGTACW	1 cut(s)	338
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	5 cut(s)	12, 377, 383, 438, 510
Tru9I	TTAA	5 cut(s)	12, 377, 383, 438, 510
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	111, 543
TspRI	CASTG	1 cut(s)	70
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	2 cut(s)	85, 279
XapI	RAATTY	1 cut(s)	379
XspI	CTAG	3 cut(s)	360, 414, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.