Rmu_sc0002294.1_g000024

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002294.1
OG0010627
Physical Location & Seq
Reverse (-)
89640 .. 89900
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002294.1_g000024.1.cds

Sequence Viewer

Length: 261 bp
atggtgaagctcaaaggggcgagcggtaccggagctccacacccatctggtgagctttcaaatgtggaatttgatcttcaaattcacaaagatgagacggcggccaagctaggagctatgcagggttcggtgaatgaggtacacgactctgttgcggctctgcgagctgaaatcctcgaggaaattcgctcaatgcgcgcagagaatagatctgctcttgctcagcatggatcacctcagctcagctttggatcgttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

86

Amino Acids

9.08

Weight (kDa)

5.72

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 176
Acc65I GGTACC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 26
AccBSI CCGCTC 1 cut(s) 24
AccII CGCG 1 cut(s) 198
AciI CCGC 3 cut(s) 24, 101, 155
AclWI GGATC 2 cut(s) 238, 259
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 3 cut(s) 68, 81, 183
AfaI GTAC 2 cut(s) 28, 141
AgsI TTSAA 2 cut(s) 60, 80
AluBI AGCT 8 cut(s) 10, 35, 55, 109, 116, 167, 241, 246
AluI AGCT 8 cut(s) 10, 35, 55, 109, 116, 167, 241, 246
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 2 cut(s) 238, 259
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 1 cut(s) 102
ApoI RAATTY 3 cut(s) 68, 81, 183
Asp718I GGTACC 1 cut(s) 26
AspLEI GCGC 2 cut(s) 198, 200
AsuHPI GGTGA 4 cut(s) 16, 62, 142, 225
AvaI CYCGRG 1 cut(s) 176
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 37
BbvCI CCTCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 52
BceAI ACGGC 1 cut(s) 114
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 1 cut(s) 110
BglII AGATCT 1 cut(s) 209
BisI GCNGC 2 cut(s) 102, 156
BlpI GCTNAGC 2 cut(s) 222, 242
BlsI GCNGC 2 cut(s) 103, 157
BmeT110I CYCGRG 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 28
Bpu10I CCTNAGC 1 cut(s) 237
Bpu1102I GCTNAGC 2 cut(s) 222, 242
BsaWI WCCGGW 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
BseMII CTCAG 3 cut(s) 236, 251, 256
BsePI GCGCGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BsnI GGCC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 4 cut(s) 73, 209, 230, 251
Bsp1720I GCTNAGC 2 cut(s) 222, 242
BspACI CCGC 3 cut(s) 24, 101, 155
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 3 cut(s) 235, 250, 255
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 28
BspPI GGATC 2 cut(s) 238, 259
BspT107I GGYRCC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 24
BssHII GCGCGC 1 cut(s) 196
BssMI GATC 4 cut(s) 73, 209, 230, 251
BstC8I GCNNGC 3 cut(s) 22, 165, 198
BstDEI CTNAG 3 cut(s) 222, 237, 242
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 2 cut(s) 198, 200
BstKTI GATC 4 cut(s) 76, 212, 233, 254
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 4 cut(s) 73, 209, 230, 251
BstMWI GCNNNNNNNGC 2 cut(s) 164, 195
BstUI CGCG 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 1 cut(s) 104
Cac8I GCNNGC 3 cut(s) 22, 165, 198
CfoI GCGC 2 cut(s) 198, 200
Csp6I GTAC 2 cut(s) 27, 140
CviAII CATG 1 cut(s) 227
CviQI GTAC 2 cut(s) 27, 140
DdeI CTNAG 3 cut(s) 222, 237, 242
DpnI GATC 4 cut(s) 75, 211, 232, 253
DpnII GATC 4 cut(s) 73, 209, 230, 251
EaeI YGGCCR 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 35
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 37
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 1 cut(s) 230
FaiI YATR 3 cut(s) 119, 228, 259
FatI CATG 1 cut(s) 226
Fnu4HI GCNGC 2 cut(s) 102, 156
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 102, 156
FspBI CTAG 1 cut(s) 110
GlaI GCGC 2 cut(s) 197, 199
GluI GCNGC 2 cut(s) 102, 156
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 30
HhaI GCGC 2 cut(s) 198, 200
Hin1II CATG 1 cut(s) 230
Hin6I GCGC 2 cut(s) 196, 198
HinP1I GCGC 2 cut(s) 196, 198
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 30
HphI GGTGA 4 cut(s) 16, 62, 142, 225
Hpy166II GTNNAC 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 195
HpyF3I CTNAG 3 cut(s) 222, 237, 242
Hsp92II CATG 1 cut(s) 230
HspAI GCGC 2 cut(s) 196, 198
KpnI GGTACC 1 cut(s) 30
Kzo9I GATC 4 cut(s) 73, 209, 230, 251
LmnI GCTCC 3 cut(s) 32, 40, 113
LpnPI CCDG 3 cut(s) 33, 43, 107
MaeI CTAG 1 cut(s) 110
MalI GATC 4 cut(s) 75, 211, 232, 253
MbiI CCGCTC 1 cut(s) 24
MboI GATC 4 cut(s) 73, 209, 230, 251
MboII GAAGA 1 cut(s) 68
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 3 cut(s) 68, 81, 183
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 4 cut(s) 130, 172, 185, 246
MslI CAYNNNNRTG 1 cut(s) 90
MspI CCGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 164, 195
NdeII GATC 4 cut(s) 73, 209, 230, 251
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 1 cut(s) 28
PaeR7I CTCGAG 1 cut(s) 176
PauI GCGCGC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 103, 157
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 28
PspXI VCTCGAGB 1 cut(s) 176
PsuI RGATCY 1 cut(s) 209
PteI GCGCGC 1 cut(s) 196
RsaI GTAC 2 cut(s) 28, 141
RsaNI GTAC 2 cut(s) 27, 140
RseI CAYNNNNRTG 1 cut(s) 90
SacI GAGCTC 1 cut(s) 37
SatI GCNGC 2 cut(s) 102, 156
Sau3AI GATC 4 cut(s) 73, 209, 230, 251
SchI GAGTC 1 cut(s) 140
SduI GDGCHC 1 cut(s) 37
Sfr274I CTCGAG 1 cut(s) 176
SlaI CTCGAG 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 3 cut(s) 68, 81, 183
SsiI CCGC 3 cut(s) 24, 101, 155
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 1 cut(s) 37
TaqI TCGA 1 cut(s) 177
TasI AATT 3 cut(s) 68, 81, 183
TauI GCSGC 2 cut(s) 104, 158
XapI RAATTY 3 cut(s) 68, 81, 183
XhoI CTCGAG 1 cut(s) 176
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.