Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010627

Physical Location & Seq

Genomic Coordinates Forward (+)

13927629 .. 13931654

Gene Structure 4026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0167200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAGAAGTACTTTGGGAACGCTTACAGAGGAGACCCGGGGGTCCCACACGCCGACCCGGAAAGGTTTGTGAACATATGGATCGGATCCGCTGCCTTCTCTGTTCTGACCTTGTTCAATCCCTACATGTGGCAGCTCTCCAATCAGTTCAATTGGCATGACAAGGCAATGCTGTTTGAGCAGCATCACTGGAAAAGGGCACTGAAGAAAGGGAAGCCCTATCAATTTAAGTGGAATGAGTACATGGACAAGGACCTCAGAGATGCCTACTATATCAACTGGCCGATGGATTCTGCTCAAGTCCTCTGTGTTGCAATAGATTTAGGAGAGGATATTTTAAATTATGCCAATATCCACAATGGAAGCTCAGGGCATAATGATAATATGTTTTCAACGTTTGGTTATCCTGCATCTGGTGATGCTATTAGCTATAGTCAGAACCCTATTCAAAGTCAAGTTGTTGTTCAAAGTGAACCCAAAACCACAAAGAAAGCTAAAAGAGCCAAGAATTTCTCCATTCAAGAAGACAACCTTCTTGTGTCTGCCTGGCTCAATACTACCCTTGATCCAGCAATAGGAAATGATCAAAAAGGTGCTGCTTATTGGAAAAGAATTTGGGAGTATTTCTATGAGGAGAAGAACTTTGAACTGGAGTGTGATCGTAATCAGGGTTCACTCATGCATCGCTGGTCTGGAATTCAACTAGATGTGCACAAATTTTGTGGCTATTATGCTGAAATTGAAAGGACAAGAGCAAGGAAAAAACCAAAGAAAACTCATGCTACGGTTCCTGCTACTTCGTCTCCTATCACTCCATTTGCTAGCCCAGATACAATAGATTTAGCTGATGGCAATGTTGAAGGCAATGAGTCTCCATGCTTGGAGAGGTCTATAGGCAAAAAGGCTGCCAAGACCTTGGCAAGGAAGGCAAAAGCTAAAGAGAAAGTGGAAGCAGCCCAATATGAATTAGGAGACTATTATGCTCTGAAAGTTGAACATGCTCATAAGGAGGATGAGCAATTTCAACTGATGTATGATGCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

348

Amino Acids

40.0

Weight (kDa)

6.84

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010627)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0249291
rosa_laevigata	RLG00000005450
rosa_multiflora	Rmu_co8431287.1_g000002 Rmu_co8465865.1_g000001 Rmu_sc0000494.1_g000014 Rmu_sc0002294.1_g000024 Rmu_sc0003546.1_g000006 Rmu_sc0004862.1_g000014 Rmu_sc0007849.1_g000013
rosa_rugosa	Rorug02G0216400 Rorug03G0167200 Rorug03G0238400
rosa_samantha	Rh1CG030900 Rh2BG308600 Rh2CG605600 Rh3BG323800 Rh3CG333400 Rh3DG335500 Rh4DG024500 Rh4DG377100 Rh6BG454500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AciI	CCGC	1 cut(s)	90
AclI	AACGTT	1 cut(s)	395
AclWI	GGATC	4 cut(s)	81, 89, 94, 560
AcoI	YGGCCR	1 cut(s)	281
AcsI	RAATTY	4 cut(s)	508, 612, 696, 716
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	2 cut(s)	11, 242
AfiI	CCNNNNNNNGG	4 cut(s)	129, 413, 575, 921
AflIII	ACRYGT	1 cut(s)	126
AjnI	CCWGG	1 cut(s)	545
AluBI	AGCT	6 cut(s)	136, 366, 429, 494, 845, 935
AluI	AGCT	6 cut(s)	136, 366, 429, 494, 845, 935
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	4 cut(s)	27, 807, 876, 966
Alw44I	GTGCAC	1 cut(s)	710
AlwI	GGATC	4 cut(s)	81, 89, 94, 560
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	1 cut(s)	281
ApaLI	GTGCAC	1 cut(s)	710
ApeKI	GCWGC	6 cut(s)	92, 133, 181, 596, 905, 953
ApoI	RAATTY	4 cut(s)	508, 612, 696, 716
AspS9I	GGNCC	2 cut(s)	43, 253
AsuC2I	CCSGG	3 cut(s)	38, 39, 59
AsuHPI	GGTGA	1 cut(s)	428
AsuNHI	GCTAGC	1 cut(s)	821
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	43, 253
BaeGI	GKGCMC	2 cut(s)	202, 714
BamHI	GGATCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	6 cut(s)	79, 145, 193, 583, 892, 965
BccI	CCATC	2 cut(s)	280, 842
BciT130I	CCWGG	1 cut(s)	547
BclI	TGATCA	1 cut(s)	583
BcnI	CCSGG	3 cut(s)	38, 39, 59
BcoDI	GTCTC	4 cut(s)	27, 807, 876, 966
BfaI	CTAG	2 cut(s)	704, 822
BfmI	CTRYAG	2 cut(s)	430, 891
BisI	GCNGC	6 cut(s)	93, 134, 182, 597, 906, 954
BlsI	GCNGC	6 cut(s)	94, 135, 183, 598, 907, 955
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	4 cut(s)	38, 39, 59, 547
Bme18I	GGWCC	2 cut(s)	43, 253
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	43, 253
BmiI	GGNNCC	4 cut(s)	44, 45, 88, 789
BmrFI	CCNGG	4 cut(s)	38, 39, 59, 547
BmsI	GCATC	6 cut(s)	193, 253, 409, 419, 691, 1027
BmtI	GCTAGC	1 cut(s)	825
BpiI	GAAGAC	1 cut(s)	531
BpmI	CTGGAG	1 cut(s)	671
Bpu10I	CCTNAGC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	282
BpuMI	CCSGG	3 cut(s)	38, 39, 59
BsaBI	GATNNNNATC	1 cut(s)	663
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	37, 38, 915
BsaXI	ACNNNNNCTCC	2 cut(s)	787, 817
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 413, 575, 921
Bse1I	ACTGG	3 cut(s)	194, 284, 654
Bse3DI	GCAATG	3 cut(s)	174, 859, 871
Bse8I	GATNNNNATC	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	3 cut(s)	37, 38, 915
BseGI	GGATG	1 cut(s)	1018
BseJI	GATNNNNATC	1 cut(s)	663
BseLI	CCNNNNNNNGG	4 cut(s)	129, 413, 575, 921
BseMI	GCAATG	3 cut(s)	174, 859, 871
BseMII	CTCAG	2 cut(s)	271, 381
BseNI	ACTGG	3 cut(s)	194, 284, 654
BseRI	GAGGAG	2 cut(s)	45, 647
BseSI	GKGCMC	2 cut(s)	202, 714
BseXI	GCAGC	6 cut(s)	79, 145, 193, 583, 892, 965
BshFI	GGCC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	714
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	38, 59
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	4 cut(s)	129, 413, 575, 921
BsmAI	GTCTC	4 cut(s)	27, 807, 876, 966
BsmBI	CGTCTC	1 cut(s)	807
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	283
Bso31I	GGTCTC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	202, 714
Bsp143I	GATC	5 cut(s)	81, 86, 565, 583, 658
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	270, 380
BspLI	GGNNCC	4 cut(s)	44, 45, 88, 789
BspOI	GCTAGC	1 cut(s)	825
BspPI	GGATC	4 cut(s)	81, 89, 94, 560
BspTNI	GGTCTC	1 cut(s)	27
BsrDI	GCAATG	3 cut(s)	174, 859, 871
BsrI	ACTGG	3 cut(s)	194, 284, 654
BssECI	CCNNGG	3 cut(s)	37, 38, 915
BssMI	GATC	5 cut(s)	81, 86, 565, 583, 658
BssT1I	CCWWGG	1 cut(s)	915
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	1 cut(s)	787
BstC8I	GCNNGC	1 cut(s)	823
BstDEI	CTNAG	2 cut(s)	257, 367
BstENI	CCTNNNNNAGG	1 cut(s)	919
BstF5I	GGATG	1 cut(s)	1018
BstKTI	GATC	5 cut(s)	84, 89, 568, 586, 661
BstMAI	GTCTC	4 cut(s)	27, 807, 876, 966
BstMBI	GATC	5 cut(s)	81, 86, 565, 583, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 500, 926
BstNI	CCWGG	1 cut(s)	547
BstNSI	RCATGY	2 cut(s)	130, 1001
BstSCI	CCNGG	4 cut(s)	36, 37, 57, 545
BstSFI	CTRYAG	2 cut(s)	430, 891
BstSLI	GKGCMC	2 cut(s)	202, 714
BstV1I	GCAGC	6 cut(s)	79, 145, 193, 583, 892, 965
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	283
BtgZI	GCGATG	1 cut(s)	668
BtsCI	GGATG	1 cut(s)	1018
BtsIMutI	CAGTG	2 cut(s)	187, 200
Cac8I	GCNNGC	1 cut(s)	823
Cfr13I	GGNCC	2 cut(s)	43, 253
Cfr9I	CCCGGG	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	10, 241
CspCI	CAANNNNNGTGG	4 cut(s)	212, 247, 703, 738
CviAII	CATG	7 cut(s)	127, 158, 244, 679, 779, 876, 998
CviQI	GTAC	2 cut(s)	10, 241
DdeI	CTNAG	2 cut(s)	257, 367
DpnI	GATC	5 cut(s)	83, 88, 567, 585, 660
DpnII	GATC	5 cut(s)	81, 86, 565, 583, 658
DraI	TTTAAA	1 cut(s)	339
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	915
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	43, 253
Eco57I	CTGAAG	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	37
EcoNI	CCTNNNNNAGG	1 cut(s)	919
EcoO109I	RGGNCCY	2 cut(s)	43, 253
EcoRI	GAATTC	1 cut(s)	696
EcoRII	CCWGG	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	915
EcoT22I	ATGCAT	1 cut(s)	684
ErhI	CCWWGG	1 cut(s)	915
Esp3I	CGTCTC	1 cut(s)	807
FaeI	CATG	7 cut(s)	130, 161, 247, 682, 782, 879, 1001
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	7 cut(s)	126, 157, 243, 678, 778, 875, 997
FauNDI	CATATG	1 cut(s)	77
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	6 cut(s)	93, 134, 182, 597, 906, 954
FokI	GGATG	1 cut(s)	1025
Fsp4HI	GCNGC	6 cut(s)	93, 134, 182, 597, 906, 954
FspBI	CTAG	2 cut(s)	704, 822
GluI	GCNGC	6 cut(s)	93, 134, 182, 597, 906, 954
GsuI	CTGGAG	1 cut(s)	671
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	2 cut(s)	38, 59
Hin1II	CATG	7 cut(s)	130, 161, 247, 682, 782, 879, 1001
HinfI	GANTC	2 cut(s)	290, 869
HpaII	CCGG	2 cut(s)	38, 59
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	4 cut(s)	73, 473, 674, 712
Hpy188I	TCNGA	5 cut(s)	86, 108, 260, 438, 987
Hpy188III	TCNNGA	2 cut(s)	521, 693
Hpy8I	GTNNAC	4 cut(s)	73, 473, 674, 712
HpyAV	CCTTC	4 cut(s)	106, 542, 854, 919
HpyCH4III	ACNGT	1 cut(s)	787
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	5 cut(s)	314, 410, 682, 712, 1040
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 500, 926
HpyF3I	CTNAG	2 cut(s)	257, 367
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	7 cut(s)	130, 161, 247, 682, 782, 879, 1001
KflI	GGGWCCC	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	5 cut(s)	81, 86, 565, 583, 658
Lsp1109I	GCAGC	6 cut(s)	79, 145, 193, 583, 892, 965
LweI	GCATC	6 cut(s)	193, 253, 409, 419, 691, 1027
MaeI	CTAG	2 cut(s)	704, 822
MaeII	ACGT	1 cut(s)	395
MalI	GATC	5 cut(s)	83, 88, 567, 585, 660
MboI	GATC	5 cut(s)	81, 86, 565, 583, 658
MboII	GAAGA	3 cut(s)	217, 536, 649
MfeI	CAATTG	1 cut(s)	151
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	2 cut(s)	202, 714
MlyI	GAGTC	1 cut(s)	878
MnlI	CCTC	7 cut(s)	23, 266, 314, 322, 625, 879, 1003
Mph1103I	ATGCAT	1 cut(s)	684
MseI	TTAA	2 cut(s)	228, 338
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	2 cut(s)	38, 59
MspR9I	CCNGG	4 cut(s)	38, 39, 59, 547
MunI	CAATTG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	547
MwoI	GCNNNNNNNGC	3 cut(s)	178, 500, 926
NciI	CCSGG	3 cut(s)	38, 39, 59
NdeI	CATATG	1 cut(s)	77
NdeII	GATC	5 cut(s)	81, 86, 565, 583, 658
NheI	GCTAGC	1 cut(s)	821
NlaIII	CATG	7 cut(s)	130, 161, 247, 682, 782, 879, 1001
NlaIV	GGNNCC	4 cut(s)	44, 45, 88, 789
NsiI	ATGCAT	1 cut(s)	684
NspI	RCATGY	2 cut(s)	130, 1001
PciI	ACATGT	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	6 cut(s)	94, 135, 183, 598, 907, 955
PleI	GAGTC	1 cut(s)	877
PpsI	GAGTC	1 cut(s)	877
PpuMI	RGGWCCY	2 cut(s)	43, 253
PscI	ACATGT	1 cut(s)	126
Psp1406I	AACGTT	1 cut(s)	395
Psp5II	RGGWCCY	2 cut(s)	43, 253
Psp6I	CCWGG	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	4 cut(s)	44, 45, 88, 789
PspPI	GGNCC	2 cut(s)	43, 253
PspPPI	RGGWCCY	2 cut(s)	43, 253
PsrI	GAACNNNNNNTAC	2 cut(s)	655, 687
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	2 cut(s)	11, 242
RsaNI	GTAC	2 cut(s)	10, 241
SaqAI	TTAA	2 cut(s)	228, 338
SatI	GCNGC	6 cut(s)	93, 134, 182, 597, 906, 954
Sau3AI	GATC	5 cut(s)	81, 86, 565, 583, 658
Sau96I	GGNCC	2 cut(s)	43, 253
ScaI	AGTACT	1 cut(s)	11
SchI	GAGTC	1 cut(s)	878
ScrFI	CCNGG	4 cut(s)	38, 39, 59, 547
SduI	GDGCHC	2 cut(s)	202, 714
SfaNI	GCATC	6 cut(s)	193, 253, 409, 419, 691, 1027
SfcI	CTRYAG	2 cut(s)	430, 891
SinI	GGWCC	2 cut(s)	43, 253
SmaI	CCCGGG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	2 cut(s)	704, 822
StyD4I	CCNGG	4 cut(s)	36, 37, 57, 545
StyI	CCWWGG	1 cut(s)	915
TaaI	ACNGT	1 cut(s)	787
TaiI	ACGT	1 cut(s)	398
TatI	WGTACW	2 cut(s)	9, 240
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	228, 338
Tru9I	TTAA	2 cut(s)	228, 338
TscAI	CASTG	2 cut(s)	194, 207
TseI	GCWGC	6 cut(s)	92, 133, 181, 596, 905, 953
TspDTI	ATGAA	1 cut(s)	978
TspMI	CCCGGG	1 cut(s)	37
TspRI	CASTG	2 cut(s)	194, 207
VneI	GTGCAC	1 cut(s)	710
VpaK11BI	GGWCC	2 cut(s)	43, 253
XagI	CCTNNNNNAGG	1 cut(s)	919
XapI	RAATTY	4 cut(s)	508, 612, 696, 716
XceI	RCATGY	2 cut(s)	130, 1001
XmaI	CCCGGG	1 cut(s)	37
XspI	CTAG	2 cut(s)	704, 822
ZrmI	AGTACT	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.