RchiOBHm_Chr6g0249471

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016165
Physical Location & Seq
Reverse (-)
5432375 .. 5433974
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22365

Sequence Viewer

Length: 1182 bp
ATGCATGCATGCATGGGTGGTAAGAAGATGGTAGCGATTTGTAATGACCGGCTGTGGTTAGCCAATTATACTATCGGAATGGTGTTTACAATGATCTTAATTAATAGTAGTAGTATGGTGGCCGGCATGGGATTTGGGGAGTCAGCTGCGGCGGCGGCGGCGGCGGCGGCGCAGGTTCCGGCAATGTTTGCGTTTGGCGACTCACTCATTGATGCTGGCAACAACAACTTCATAAGCTCCATCGCAAAATCCAATTATTATCCTTACGGCATCGATTTCAGGGGAGGCCCCTCCGGCAGATTCACCAATGGAAGAACTTTCGTTGATATGCTTGGAAATTTGCTGGGTCTTCCTTATGCTCCAGCCTTTGCAGATCCTAATACAAAAGGAAACAGAATGCTCAGGGGAGTCAATTATGCTTCAGCAGCTGCTGGCATACTCGATGAGACAGGCCGGCACTATGGAGATCGGTATACCCTAAGCCGGCAAGTGTTGAATTTCGAGACCACCTTGAATCAGTTAAGAACGATGATGGGGGGAACTAACCTGACCCAGTACCTGGCTAAGTCGATTGCCGTTTTGGTATTTGGGAGCAATGACTACATCAACAACTACCTCATGCCTTCCTTCTATTCTTCCAGCTACACTTACACTCCTCTTGCCTTTGCCAACCTTCTCCTTAATCGCTATGCCACACAGATTCTGGCTTTGCACGGTCTTGGATTGAGGAAGTTTGTGCTAGTAGGAATTGGGCCTTTGGGTTGCATTCCTAACCAAAGAGCATCAGGTAAGGCCCAGCCTGGAAGGTGTGTTGACAATGTCAATCAGATCCTGGGCAGCTTCAATCAAGGGCTCAGATCGCTCGTCACCCAACTTAACAACAACCATCCTGGTGCCATCTTTGTGTACGGCAATGCTTATGGCGCTTTTGGTGACATTCTGAATAACCCTGCAGCCTATGGTTTCAGTGTGATTGATAGGGCTTGCTGTGGAATTGGGAGGAACCAAGGGCAGATAACTTGTCTTCCATTTGCAGTTCCATGCTCAAATAGAAATCAATATATGTTTTGGGATGCTTTCCACCCAACTGAAGCTGCAAACGCAGTCCTTGCTTGGCGAGCTTTTAATGGCCCGCCCTCTGATAGTTACCCCATCAATGTCCAACAAATGGCTCTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

393

Amino Acids

42.39

Weight (kDa)

9.05

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 63 - 371 1.4e-32 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71250
fragaria_vesca FvH4_2g00180
malus_domestica MD10G1000500.v1.1
prunus_persica Prupe.8G001600_v2.0.a1 Prupe.8G001600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249471
rosa_laevigata RLG00000015578
rosa_multiflora Rmu_ssc0000459.1_g000021
rosa_roxburghii Rroxscaffold_7G00217670
rosa_rugosa Rorug05G0492600
rosa_samantha Rh6AG002300 Rh6BG007800 Rh6CG001500 Rh6DG001500
rosa_wichuraiana Rw6G000290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 163
AccB1I GGYRCC 1 cut(s) 893
AccB7I CCANNNNNTGG 2 cut(s) 559, 1168
AccI GTMKAC 1 cut(s) 473
AciI CCGC 8 cut(s) 149, 152, 155, 158, 161, 164, 167, 1133
AclWI GGATC 2 cut(s) 368, 823
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 2 cut(s) 337, 496
AcuI CTGAAG 2 cut(s) 405, 1110
AfaI GTAC 2 cut(s) 557, 908
AfiI CCNNNNNNNGG 3 cut(s) 483, 559, 1168
AgsI TTSAA 3 cut(s) 496, 514, 844
AjnI CCWGG 4 cut(s) 558, 799, 831, 889
AluBI AGCT 7 cut(s) 146, 237, 428, 642, 840, 1094, 1121
AluI AGCT 7 cut(s) 146, 237, 428, 642, 840, 1094, 1121
Alw26I GTCTC 2 cut(s) 440, 497
AlwI GGATC 2 cut(s) 368, 823
AlwNI CAGNNNCTG 5 cut(s) 428, 431, 559, 703, 832
AoxI GGCC 6 cut(s) 120, 286, 451, 752, 792, 1129
ApeKI GCWGC 6 cut(s) 146, 425, 428, 837, 953, 1094
ApoI RAATTY 2 cut(s) 337, 496
AseI ATTAAT 1 cut(s) 102
AspLEI GCGC 2 cut(s) 172, 926
AspS9I GGNCC 4 cut(s) 287, 752, 793, 1130
AsuHPI GGTGA 3 cut(s) 295, 859, 944
BanI GGYRCC 1 cut(s) 893
BanII GRGCYC 1 cut(s) 855
BbsI GAAGAC 2 cut(s) 341, 1016
BbvI GCAGC 6 cut(s) 133, 415, 437, 849, 965, 1081
BccI CCATC 6 cut(s) 22, 248, 526, 894, 905, 1160
BceAI ACGGC 3 cut(s) 283, 560, 925
BciT130I CCWGG 4 cut(s) 560, 801, 833, 891
BcoDI GTCTC 2 cut(s) 440, 497
BfaI CTAG 1 cut(s) 740
BfmI CTRYAG 1 cut(s) 951
BfoI RGCGCY 1 cut(s) 927
BfuAI ACCTGC 1 cut(s) 163
BglI GCCNNNNNGGC 1 cut(s) 294
Bme1390I CCNGG 4 cut(s) 560, 801, 833, 891
BmgT120I GGNCC 4 cut(s) 287, 752, 793, 1130
BmiI GGNNCC 4 cut(s) 177, 289, 895, 1004
BmrFI CCNGG 4 cut(s) 560, 801, 833, 891
BmrI ACTGGG 1 cut(s) 547
BmsI GCATC 4 cut(s) 202, 279, 791, 1063
BmuI ACTGGG 1 cut(s) 547
BpiI GAAGAC 2 cut(s) 341, 1016
BpmI CTGGAG 1 cut(s) 345
Bpu10I CCTNAGC 2 cut(s) 401, 479
Bsa29I ATCGAT 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 497
BsaJI CCNNGG 2 cut(s) 832, 1006
BsaXI ACNNNNNCTCC 2 cut(s) 637, 667
Bsc4I CCNNNNNNNGG 3 cut(s) 483, 559, 1168
Bse118I RCCGGY 4 cut(s) 48, 122, 453, 483
Bse1I ACTGG 1 cut(s) 553
Bse3DI GCAATG 3 cut(s) 189, 601, 919
BseBI CCWGG 4 cut(s) 560, 801, 833, 891
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 832, 1006
BseGI GGATG 2 cut(s) 886, 1078
BseLI CCNNNNNNNGG 3 cut(s) 483, 559, 1168
BseMI GCAATG 3 cut(s) 189, 601, 919
BseMII CTCAG 2 cut(s) 415, 868
BseNI ACTGG 1 cut(s) 553
BseRI GAGGAG 1 cut(s) 645
BseXI GCAGC 6 cut(s) 133, 415, 437, 849, 965, 1081
BseYI CCCAGC 2 cut(s) 343, 795
BshFI GGCC 6 cut(s) 122, 288, 453, 754, 794, 1131
BshNI GGYRCC 1 cut(s) 893
BshVI ATCGAT 1 cut(s) 273
BsiSI CCGG 6 cut(s) 49, 123, 179, 294, 454, 484
BslI CCNNNNNNNGG 3 cut(s) 483, 559, 1168
BsmAI GTCTC 2 cut(s) 440, 497
BsmI GAATGC 2 cut(s) 402, 765
BsnI GGCC 6 cut(s) 122, 288, 453, 754, 794, 1131
Bso31I GGTCTC 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 855
Bsp143I GATC 5 cut(s) 93, 373, 466, 828, 857
BspACI CCGC 8 cut(s) 149, 152, 155, 158, 161, 164, 167, 1133
BspANI GGCC 6 cut(s) 122, 288, 453, 754, 794, 1131
BspCNI CTCAG 2 cut(s) 414, 867
BspDI ATCGAT 1 cut(s) 273
BspLI GGNNCC 4 cut(s) 177, 289, 895, 1004
BspMAI CTGCAG 1 cut(s) 955
BspMI ACCTGC 1 cut(s) 163
BspPI GGATC 2 cut(s) 368, 823
BspT107I GGYRCC 1 cut(s) 893
BspTNI GGTCTC 1 cut(s) 497
BsrDI GCAATG 3 cut(s) 189, 601, 919
BsrFI RCCGGY 4 cut(s) 48, 122, 453, 483
BsrI ACTGG 1 cut(s) 553
BssAI RCCGGY 4 cut(s) 48, 122, 453, 483
BssECI CCNNGG 2 cut(s) 832, 1006
BssMI GATC 5 cut(s) 93, 373, 466, 828, 857
BssNAI GTATAC 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 1006
Bst1107I GTATAC 1 cut(s) 474
Bst2UI CCWGG 4 cut(s) 560, 801, 833, 891
Bst4CI ACNGT 1 cut(s) 716
BstAPI GCANNNNNTGC 2 cut(s) 188, 1109
BstDEI CTNAG 4 cut(s) 401, 479, 564, 854
BstF5I GGATG 2 cut(s) 886, 1078
BstH2I RGCGCY 1 cut(s) 927
BstHHI GCGC 2 cut(s) 172, 926
BstKTI GATC 5 cut(s) 96, 376, 469, 831, 860
BstMAI GTCTC 2 cut(s) 440, 497
BstMBI GATC 5 cut(s) 93, 373, 466, 828, 857
BstNI CCWGG 4 cut(s) 560, 801, 833, 891
BstNSI RCATGY 2 cut(s) 8, 12
BstSCI CCNGG 4 cut(s) 558, 799, 831, 889
BstSFI CTRYAG 1 cut(s) 951
BstV1I GCAGC 6 cut(s) 133, 415, 437, 849, 965, 1081
BstV2I GAAGAC 2 cut(s) 341, 1016
BstX2I RGATCY 2 cut(s) 373, 828
BstYI RGATCY 2 cut(s) 373, 828
BstZ17I GTATAC 1 cut(s) 474
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 6 cut(s) 122, 288, 453, 754, 794, 1131
BsuTUI ATCGAT 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 2 cut(s) 886, 1078
BtsIMutI CAGTG 1 cut(s) 973
BveI ACCTGC 1 cut(s) 163
CaiI CAGNNNCTG 5 cut(s) 428, 431, 559, 703, 832
CfoI GCGC 2 cut(s) 172, 926
Cfr10I RCCGGY 4 cut(s) 48, 122, 453, 483
Cfr13I GGNCC 4 cut(s) 287, 752, 793, 1130
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 2 cut(s) 556, 907
CviAII CATG 6 cut(s) 5, 9, 13, 127, 619, 1041
CviQI GTAC 2 cut(s) 556, 907
DdeI CTNAG 4 cut(s) 401, 479, 564, 854
DpnI GATC 5 cut(s) 95, 375, 468, 830, 859
DpnII GATC 5 cut(s) 93, 373, 466, 828, 857
EaeI YGGCCR 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 1006
Eco24I GRGCYC 1 cut(s) 855
Eco31I GGTCTC 1 cut(s) 497
Eco57I CTGAAG 2 cut(s) 405, 1110
EcoO109I RGGNCCY 1 cut(s) 287
EcoRII CCWGG 4 cut(s) 558, 799, 831, 889
EcoT14I CCWWGG 1 cut(s) 1006
EcoT22I ATGCAT 3 cut(s) 6, 10, 14
EcoT38I GRGCYC 1 cut(s) 855
ErhI CCWWGG 1 cut(s) 1006
FaeI CATG 6 cut(s) 8, 12, 16, 130, 622, 1044
FatI CATG 6 cut(s) 4, 8, 12, 126, 618, 1040
FauI CCCGC 1 cut(s) 1140
FblI GTMKAC 1 cut(s) 473
FokI GGATG 2 cut(s) 873, 1085
FriOI GRGCYC 1 cut(s) 855
FspBI CTAG 1 cut(s) 740
GlaI GCGC 2 cut(s) 171, 925
GsaI CCCAGC 2 cut(s) 347, 799
GsuI CTGGAG 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 927
HaeIII GGCC 6 cut(s) 122, 288, 453, 754, 794, 1131
HapII CCGG 6 cut(s) 49, 123, 179, 294, 454, 484
HhaI GCGC 2 cut(s) 172, 926
Hin1II CATG 6 cut(s) 8, 12, 16, 130, 622, 1044
Hin6I GCGC 2 cut(s) 170, 924
HinP1I GCGC 2 cut(s) 170, 924
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HinfI GANTC 6 cut(s) 140, 200, 300, 408, 514, 700
HpaII CCGG 6 cut(s) 49, 123, 179, 294, 454, 484
HphI GGTGA 3 cut(s) 295, 859, 944
Hpy166II GTNNAC 4 cut(s) 87, 474, 814, 907
Hpy188I TCNGA 5 cut(s) 77, 828, 857, 942, 1141
Hpy188III TCNNGA 1 cut(s) 502
Hpy8I GTNNAC 4 cut(s) 87, 474, 814, 907
HpyAV CCTTC 4 cut(s) 633, 637, 683, 798
HpyCH4III ACNGT 1 cut(s) 716
HpyCH4V TGCA 9 cut(s) 4, 8, 12, 371, 712, 765, 953, 1034, 1097
HpyF3I CTNAG 4 cut(s) 401, 479, 564, 854
Hsp92II CATG 6 cut(s) 8, 12, 16, 130, 622, 1044
HspAI GCGC 2 cut(s) 170, 924
KroI GCCGGC 3 cut(s) 122, 453, 483
KroNI GCCGGC 3 cut(s) 124, 455, 485
Kzo9I GATC 5 cut(s) 93, 373, 466, 828, 857
LmnI GCTCC 3 cut(s) 242, 364, 591
Lsp1109I GCAGC 6 cut(s) 133, 415, 437, 849, 965, 1081
LweI GCATC 4 cut(s) 202, 279, 791, 1063
MaeI CTAG 1 cut(s) 740
MaeIII GTNAC 3 cut(s) 865, 932, 1145
MalI GATC 5 cut(s) 95, 375, 468, 830, 859
MboI GATC 5 cut(s) 93, 373, 466, 828, 857
MboII GAAGA 5 cut(s) 37, 324, 341, 627, 1016
MflI RGATCY 2 cut(s) 373, 828
MhlI GDGCHC 1 cut(s) 855
MluCI AATT 8 cut(s) 64, 99, 253, 337, 412, 496, 747, 993
MlyI GAGTC 3 cut(s) 149, 194, 417
MnlI CCTC 7 cut(s) 278, 301, 626, 666, 720, 993, 1147
Mph1103I ATGCAT 3 cut(s) 6, 10, 14
MroNI GCCGGC 3 cut(s) 122, 453, 483
MseI TTAA 6 cut(s) 98, 102, 521, 681, 876, 1125
MslI CAYNNNNRTG 2 cut(s) 891, 902
MspA1I CMGCKG 2 cut(s) 146, 428
MspI CCGG 6 cut(s) 49, 123, 179, 294, 454, 484
MspR9I CCNGG 4 cut(s) 560, 801, 833, 891
Mva1269I GAATGC 2 cut(s) 402, 765
MvaI CCWGG 4 cut(s) 560, 801, 833, 891
NaeI GCCGGC 3 cut(s) 124, 455, 485
NdeII GATC 5 cut(s) 93, 373, 466, 828, 857
NgoMIV GCCGGC 3 cut(s) 122, 453, 483
NlaIII CATG 6 cut(s) 8, 12, 16, 130, 622, 1044
NlaIV GGNNCC 4 cut(s) 177, 289, 895, 1004
NmuCI GTSAC 2 cut(s) 865, 932
NsiI ATGCAT 3 cut(s) 6, 10, 14
NspI RCATGY 2 cut(s) 8, 12
PacI TTAATTAA 1 cut(s) 102
PaeI GCATGC 2 cut(s) 8, 12
PctI GAATGC 2 cut(s) 402, 765
PdiI GCCGGC 3 cut(s) 124, 455, 485
PfeI GAWTC 3 cut(s) 300, 514, 700
PflFI GACNNNGTC 1 cut(s) 818
PflMI CCANNNNNTGG 2 cut(s) 559, 1168
PleI GAGTC 3 cut(s) 148, 194, 416
PpsI GAGTC 3 cut(s) 148, 194, 416
PshBI ATTAAT 1 cut(s) 102
Psp6I CCWGG 4 cut(s) 558, 799, 831, 889
PspFI CCCAGC 2 cut(s) 343, 795
PspGI CCWGG 4 cut(s) 558, 799, 831, 889
PspN4I GGNNCC 4 cut(s) 177, 289, 895, 1004
PspPI GGNCC 4 cut(s) 287, 752, 793, 1130
PstI CTGCAG 1 cut(s) 955
PstNI CAGNNNCTG 5 cut(s) 428, 431, 559, 703, 832
PsuI RGATCY 2 cut(s) 373, 828
PsyI GACNNNGTC 1 cut(s) 818
PvuII CAGCTG 2 cut(s) 146, 428
RsaI GTAC 2 cut(s) 557, 908
RsaNI GTAC 2 cut(s) 556, 907
RseI CAYNNNNRTG 2 cut(s) 891, 902
SaqAI TTAA 6 cut(s) 98, 102, 521, 681, 876, 1125
Sau3AI GATC 5 cut(s) 93, 373, 466, 828, 857
Sau96I GGNCC 4 cut(s) 287, 752, 793, 1130
SchI GAGTC 3 cut(s) 149, 194, 417
ScrFI CCNGG 4 cut(s) 560, 801, 833, 891
SduI GDGCHC 1 cut(s) 855
SfaNI GCATC 4 cut(s) 202, 279, 791, 1063
SfcI CTRYAG 1 cut(s) 951
SmiMI CAYNNNNRTG 2 cut(s) 891, 902
SphI GCATGC 2 cut(s) 8, 12
Sse9I AATT 8 cut(s) 64, 99, 253, 337, 412, 496, 747, 993
SsiI CCGC 8 cut(s) 149, 152, 155, 158, 161, 164, 167, 1133
SspMI CTAG 1 cut(s) 740
StyD4I CCNGG 4 cut(s) 558, 799, 831, 889
StyI CCWWGG 1 cut(s) 1006
TaaI ACNGT 1 cut(s) 716
TaqI TCGA 4 cut(s) 273, 441, 501, 569
TasI AATT 8 cut(s) 64, 99, 253, 337, 412, 496, 747, 993
TauI GCSGC 7 cut(s) 152, 155, 158, 161, 164, 167, 170
TfiI GAWTC 3 cut(s) 300, 514, 700
Tru1I TTAA 6 cut(s) 98, 102, 521, 681, 876, 1125
Tru9I TTAA 6 cut(s) 98, 102, 521, 681, 876, 1125
TscAI CASTG 1 cut(s) 973
TseFI GTSAC 2 cut(s) 865, 932
TseI GCWGC 6 cut(s) 146, 425, 428, 837, 953, 1094
Tsp45I GTSAC 2 cut(s) 865, 932
TspDTI ATGAA 1 cut(s) 220
TspRI CASTG 1 cut(s) 973
Tth111I GACNNNGTC 1 cut(s) 818
Van91I CCANNNNNTGG 2 cut(s) 559, 1168
VspI ATTAAT 1 cut(s) 102
XapI RAATTY 2 cut(s) 337, 496
XceI RCATGY 2 cut(s) 8, 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XmiI GTMKAC 1 cut(s) 473
XspI CTAG 1 cut(s) 740
Zsp2I ATGCAT 3 cut(s) 6, 10, 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.