Rh6DG001500

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0016165
Physical Location & Seq
Reverse (-)
242943 .. 245011
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG001500.1

Sequence Viewer

Length: 963 bp
ATGCATGCATGCATGGGTGGTAAGAAGATGGCGGTAGCGATTTGTAATGACCGGCTGTGGTTAGCCAATTATACCATCGGAATGGTGTTTACAATGATCTTAATTAGTAGTAGTATGGTGGCCGGCATGGGATTTGGGGAGTCAGTGGCGGCGGCGGCGCAGGTTCCGGCAATGTTTGCGTTTGGGGACTCACTCATTGATGCTGGCAACAACAACTTCATAAGCTCCATCGCAAAATCCAATTATTATCCTTACGGCATCGATTTCAGGGGAGGCCCCTCCGGCAGATTCACCAATGGAAGAACTTTCGTTGATATGCTTGGAAATTTGCTGGGTATTCCTTATGCTCCAGCCTTTGCAGATCCTAATACAAAAGGAAACATAATGCTCAGGGGAGTCAATTATGCTTCAGCAGCTGCTGGCATACTCGATGAGACAGGCCGGCACTATGGAGATCGGTATACCCTAAGCCGGCAAGTGTTGAATTTCGAGACCACCTTGAATCAGTTAAGAACGATGATGGGGGGAACTAACCTGACCCAGTACCTGGCTAAGTCGATTGCCGTTTTGGTATTTGGGAGCAATGACTACATCAACAACTACCTCATGCCTTCCCTCTATTCTTCCAGCTACACTTACACTCCTCCTGCCTTTGCCAACCTTCTCCTTAATCGCTATGCCACACAGATTCTGTCTTTGCACGGTCTTGGATTGAGGAAGTTTGTGCTAGTAGGAATTGGGCCTTTGGGTTGCATTCCTAACCAAAGAGCATCAGTTAAGGCCCAGCCTGGAAGGTGTGTTGACAATGTCAATCAGATCCTTGGCAGCTTCAATCAAGGGCTCAGATCGCTCGTCACCCAACTTAACAACAACCATCCTGGTGCCATCTTTGTGTACGGCAATGCTTATGGCGCTTTTGGTGACATTCTGAATAACCCTGCACCCTATGGTAAGTATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

320

Amino Acids

34.5

Weight (kDa)

9.28

Isoelectric Point (pI)

28.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 59 - 305 3.3e-23 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71250
fragaria_vesca FvH4_2g00180
malus_domestica MD10G1000500.v1.1
prunus_persica Prupe.8G001600_v2.0.a1 Prupe.8G001600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249471
rosa_laevigata RLG00000015578
rosa_multiflora Rmu_ssc0000459.1_g000021
rosa_roxburghii Rroxscaffold_7G00217670
rosa_rugosa Rorug05G0492600
rosa_samantha Rh6AG002300 Rh6BG007800 Rh6CG001500 Rh6DG001500
rosa_wichuraiana Rw6G000290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 151
AccB1I GGYRCC 1 cut(s) 881
AccB7I CCANNNNNTGG 1 cut(s) 547
AccI GTMKAC 2 cut(s) 461, 956
AciI CCGC 4 cut(s) 32, 149, 152, 155
AclWI GGATC 2 cut(s) 356, 811
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 2 cut(s) 325, 484
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 2 cut(s) 545, 896
AfiI CCNNNNNNNGG 2 cut(s) 471, 547
AgsI TTSAA 3 cut(s) 484, 502, 832
AjnI CCWGG 3 cut(s) 546, 787, 877
AluBI AGCT 4 cut(s) 225, 416, 630, 828
AluI AGCT 4 cut(s) 225, 416, 630, 828
Alw26I GTCTC 2 cut(s) 428, 485
AlwI GGATC 2 cut(s) 356, 811
AlwNI CAGNNNCTG 4 cut(s) 416, 419, 547, 691
AoxI GGCC 5 cut(s) 120, 274, 439, 740, 780
ApeKI GCWGC 3 cut(s) 413, 416, 825
ApoI RAATTY 2 cut(s) 325, 484
AspLEI GCGC 2 cut(s) 160, 914
AspS9I GGNCC 3 cut(s) 275, 740, 781
AsuHPI GGTGA 3 cut(s) 283, 847, 932
BanI GGYRCC 1 cut(s) 881
BanII GRGCYC 1 cut(s) 843
BbvI GCAGC 3 cut(s) 403, 425, 837
BccI CCATC 6 cut(s) 22, 83, 236, 514, 882, 893
BceAI ACGGC 3 cut(s) 271, 548, 913
BciT130I CCWGG 3 cut(s) 548, 789, 879
BcoDI GTCTC 2 cut(s) 428, 485
BfaI CTAG 1 cut(s) 728
BfoI RGCGCY 1 cut(s) 915
BfuAI ACCTGC 1 cut(s) 151
BglI GCCNNNNNGGC 1 cut(s) 282
BisI GCNGC 6 cut(s) 150, 153, 156, 414, 417, 826
BlsI GCNGC 6 cut(s) 151, 154, 157, 415, 418, 827
Bme1390I CCNGG 3 cut(s) 548, 789, 879
BmgT120I GGNCC 3 cut(s) 275, 740, 781
BmiI GGNNCC 3 cut(s) 165, 277, 883
BmrFI CCNGG 3 cut(s) 548, 789, 879
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 3 cut(s) 190, 267, 779
BmuI ACTGGG 1 cut(s) 535
BpmI CTGGAG 1 cut(s) 333
Bpu10I CCTNAGC 2 cut(s) 389, 467
Bsa29I ATCGAT 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 485
BsaJI CCNNGG 1 cut(s) 820
BsaXI ACNNNNNCTCC 2 cut(s) 625, 655
Bsc4I CCNNNNNNNGG 2 cut(s) 471, 547
Bse118I RCCGGY 4 cut(s) 51, 122, 441, 471
Bse1I ACTGG 1 cut(s) 541
Bse3DI GCAATG 3 cut(s) 177, 589, 907
BseBI CCWGG 3 cut(s) 548, 789, 879
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 820
BseGI GGATG 1 cut(s) 874
BseLI CCNNNNNNNGG 2 cut(s) 471, 547
BseMI GCAATG 3 cut(s) 177, 589, 907
BseMII CTCAG 2 cut(s) 403, 856
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 633
BseXI GCAGC 3 cut(s) 403, 425, 837
BseYI CCCAGC 2 cut(s) 331, 783
BsgI GTGCAG 1 cut(s) 924
BshFI GGCC 5 cut(s) 122, 276, 441, 742, 782
BshNI GGYRCC 1 cut(s) 881
BshVI ATCGAT 1 cut(s) 261
BsiSI CCGG 6 cut(s) 52, 123, 167, 282, 442, 472
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 471, 547
BsmAI GTCTC 2 cut(s) 428, 485
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 753
BsnI GGCC 5 cut(s) 122, 276, 441, 742, 782
Bso31I GGTCTC 1 cut(s) 485
Bsp1286I GDGCHC 1 cut(s) 843
Bsp143I GATC 5 cut(s) 96, 361, 454, 816, 845
BspACI CCGC 4 cut(s) 32, 149, 152, 155
BspANI GGCC 5 cut(s) 122, 276, 441, 742, 782
BspCNI CTCAG 2 cut(s) 402, 855
BspDI ATCGAT 1 cut(s) 261
BspLI GGNNCC 3 cut(s) 165, 277, 883
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 2 cut(s) 356, 811
BspT107I GGYRCC 1 cut(s) 881
BspTNI GGTCTC 1 cut(s) 485
BsrDI GCAATG 3 cut(s) 177, 589, 907
BsrFI RCCGGY 4 cut(s) 51, 122, 441, 471
BsrI ACTGG 1 cut(s) 541
BssAI RCCGGY 4 cut(s) 51, 122, 441, 471
BssECI CCNNGG 1 cut(s) 820
BssMI GATC 5 cut(s) 96, 361, 454, 816, 845
BssNAI GTATAC 2 cut(s) 462, 957
BssT1I CCWWGG 1 cut(s) 820
Bst1107I GTATAC 2 cut(s) 462, 957
Bst2UI CCWGG 3 cut(s) 548, 789, 879
Bst4CI ACNGT 1 cut(s) 704
BstAPI GCANNNNNTGC 1 cut(s) 176
BstC8I GCNNGC 7 cut(s) 6, 10, 124, 205, 421, 443, 473
BstDEI CTNAG 4 cut(s) 389, 467, 552, 842
BstF5I GGATG 1 cut(s) 874
BstH2I RGCGCY 1 cut(s) 915
BstHHI GCGC 2 cut(s) 160, 914
BstKTI GATC 5 cut(s) 99, 364, 457, 819, 848
BstMAI GTCTC 2 cut(s) 428, 485
BstMBI GATC 5 cut(s) 96, 361, 454, 816, 845
BstMWI GCNNNNNNNGC 6 cut(s) 155, 176, 282, 413, 847, 911
BstNI CCWGG 3 cut(s) 548, 789, 879
BstNSI RCATGY 2 cut(s) 8, 12
BstSCI CCNGG 3 cut(s) 546, 787, 877
BstV1I GCAGC 3 cut(s) 403, 425, 837
BstX2I RGATCY 2 cut(s) 361, 816
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 2 cut(s) 361, 816
BstZ17I GTATAC 2 cut(s) 462, 957
Bsu15I ATCGAT 1 cut(s) 261
BsuRI GGCC 5 cut(s) 122, 276, 441, 742, 782
BsuTUI ATCGAT 1 cut(s) 261
BtgZI GCGATG 1 cut(s) 214
BtsCI GGATG 1 cut(s) 874
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 7 cut(s) 6, 10, 124, 205, 421, 443, 473
CaiI CAGNNNCTG 4 cut(s) 416, 419, 547, 691
CfoI GCGC 2 cut(s) 160, 914
Cfr10I RCCGGY 4 cut(s) 51, 122, 441, 471
Cfr13I GGNCC 3 cut(s) 275, 740, 781
ClaI ATCGAT 1 cut(s) 261
Csp6I GTAC 2 cut(s) 544, 895
CviAII CATG 5 cut(s) 5, 9, 13, 127, 607
CviQI GTAC 2 cut(s) 544, 895
DdeI CTNAG 4 cut(s) 389, 467, 552, 842
DpnI GATC 5 cut(s) 98, 363, 456, 818, 847
DpnII GATC 5 cut(s) 96, 361, 454, 816, 845
EaeI YGGCCR 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 820
Eco24I GRGCYC 1 cut(s) 843
Eco31I GGTCTC 1 cut(s) 485
Eco57I CTGAAG 1 cut(s) 393
EcoO109I RGGNCCY 1 cut(s) 275
EcoRII CCWGG 3 cut(s) 546, 787, 877
EcoT14I CCWWGG 1 cut(s) 820
EcoT22I ATGCAT 3 cut(s) 6, 10, 14
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 1 cut(s) 820
FaeI CATG 5 cut(s) 8, 12, 16, 130, 610
FaqI GGGAC 1 cut(s) 200
FatI CATG 5 cut(s) 4, 8, 12, 126, 606
FblI GTMKAC 2 cut(s) 461, 956
Fnu4HI GCNGC 6 cut(s) 150, 153, 156, 414, 417, 826
FokI GGATG 1 cut(s) 861
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 6 cut(s) 150, 153, 156, 414, 417, 826
FspBI CTAG 1 cut(s) 728
GlaI GCGC 2 cut(s) 159, 913
GluI GCNGC 6 cut(s) 150, 153, 156, 414, 417, 826
GsaI CCCAGC 2 cut(s) 335, 787
GsuI CTGGAG 1 cut(s) 333
HaeII RGCGCY 1 cut(s) 915
HaeIII GGCC 5 cut(s) 122, 276, 441, 742, 782
HapII CCGG 6 cut(s) 52, 123, 167, 282, 442, 472
HhaI GCGC 2 cut(s) 160, 914
Hin1II CATG 5 cut(s) 8, 12, 16, 130, 610
Hin6I GCGC 2 cut(s) 158, 912
HinP1I GCGC 2 cut(s) 158, 912
HincII GTYRAC 1 cut(s) 802
HindII GTYRAC 1 cut(s) 802
HinfI GANTC 6 cut(s) 140, 188, 288, 396, 502, 688
HpaII CCGG 6 cut(s) 52, 123, 167, 282, 442, 472
HphI GGTGA 3 cut(s) 283, 847, 932
Hpy166II GTNNAC 5 cut(s) 90, 462, 802, 895, 957
Hpy188I TCNGA 4 cut(s) 80, 816, 845, 930
Hpy188III TCNNGA 1 cut(s) 490
Hpy8I GTNNAC 5 cut(s) 90, 462, 802, 895, 957
HpyAV CCTTC 3 cut(s) 621, 671, 786
HpyCH4III ACNGT 1 cut(s) 704
HpyCH4V TGCA 7 cut(s) 4, 8, 12, 359, 700, 753, 941
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 176, 282, 413, 847, 911
HpyF3I CTNAG 4 cut(s) 389, 467, 552, 842
Hsp92II CATG 5 cut(s) 8, 12, 16, 130, 610
HspAI GCGC 2 cut(s) 158, 912
KroI GCCGGC 3 cut(s) 122, 441, 471
KroNI GCCGGC 3 cut(s) 124, 443, 473
Kzo9I GATC 5 cut(s) 96, 361, 454, 816, 845
LmnI GCTCC 3 cut(s) 230, 352, 579
Lsp1109I GCAGC 3 cut(s) 403, 425, 837
LweI GCATC 3 cut(s) 190, 267, 779
MaeI CTAG 1 cut(s) 728
MaeIII GTNAC 2 cut(s) 853, 920
MalI GATC 5 cut(s) 98, 363, 456, 818, 847
MboI GATC 5 cut(s) 96, 361, 454, 816, 845
MboII GAAGA 3 cut(s) 37, 312, 615
MflI RGATCY 2 cut(s) 361, 816
MhlI GDGCHC 1 cut(s) 843
MluCI AATT 7 cut(s) 67, 102, 241, 325, 400, 484, 735
MlyI GAGTC 3 cut(s) 149, 182, 405
MnlI CCTC 6 cut(s) 266, 289, 614, 626, 654, 708
Mph1103I ATGCAT 3 cut(s) 6, 10, 14
MroNI GCCGGC 3 cut(s) 122, 441, 471
MseI TTAA 5 cut(s) 101, 509, 669, 777, 864
MslI CAYNNNNRTG 3 cut(s) 80, 879, 890
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 6 cut(s) 52, 123, 167, 282, 442, 472
MspR9I CCNGG 3 cut(s) 548, 789, 879
Mva1269I GAATGC 1 cut(s) 753
MvaI CCWGG 3 cut(s) 548, 789, 879
MwoI GCNNNNNNNGC 6 cut(s) 155, 176, 282, 413, 847, 911
NaeI GCCGGC 3 cut(s) 124, 443, 473
NdeII GATC 5 cut(s) 96, 361, 454, 816, 845
NgoMIV GCCGGC 3 cut(s) 122, 441, 471
NlaIII CATG 5 cut(s) 8, 12, 16, 130, 610
NlaIV GGNNCC 3 cut(s) 165, 277, 883
NmuCI GTSAC 2 cut(s) 853, 920
NsiI ATGCAT 3 cut(s) 6, 10, 14
NspI RCATGY 2 cut(s) 8, 12
PaeI GCATGC 2 cut(s) 8, 12
PctI GAATGC 1 cut(s) 753
PdiI GCCGGC 3 cut(s) 124, 443, 473
PfeI GAWTC 3 cut(s) 288, 502, 688
PflFI GACNNNGTC 1 cut(s) 806
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 6 cut(s) 151, 154, 157, 415, 418, 827
PleI GAGTC 3 cut(s) 148, 182, 404
PpsI GAGTC 3 cut(s) 148, 182, 404
Psp6I CCWGG 3 cut(s) 546, 787, 877
PspFI CCCAGC 2 cut(s) 331, 783
PspGI CCWGG 3 cut(s) 546, 787, 877
PspN4I GGNNCC 3 cut(s) 165, 277, 883
PspPI GGNCC 3 cut(s) 275, 740, 781
PstNI CAGNNNCTG 4 cut(s) 416, 419, 547, 691
PsuI RGATCY 2 cut(s) 361, 816
PsyI GACNNNGTC 1 cut(s) 806
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 545, 896
RsaNI GTAC 2 cut(s) 544, 895
RseI CAYNNNNRTG 3 cut(s) 80, 879, 890
SaqAI TTAA 5 cut(s) 101, 509, 669, 777, 864
SatI GCNGC 6 cut(s) 150, 153, 156, 414, 417, 826
Sau3AI GATC 5 cut(s) 96, 361, 454, 816, 845
Sau96I GGNCC 3 cut(s) 275, 740, 781
SchI GAGTC 3 cut(s) 149, 182, 405
ScrFI CCNGG 3 cut(s) 548, 789, 879
SduI GDGCHC 1 cut(s) 843
SfaNI GCATC 3 cut(s) 190, 267, 779
SmiMI CAYNNNNRTG 3 cut(s) 80, 879, 890
SphI GCATGC 2 cut(s) 8, 12
Sse9I AATT 7 cut(s) 67, 102, 241, 325, 400, 484, 735
SsiI CCGC 4 cut(s) 32, 149, 152, 155
SspMI CTAG 1 cut(s) 728
StyD4I CCNGG 3 cut(s) 546, 787, 877
StyI CCWWGG 1 cut(s) 820
TaaI ACNGT 1 cut(s) 704
TaqI TCGA 4 cut(s) 261, 429, 489, 557
TasI AATT 7 cut(s) 67, 102, 241, 325, 400, 484, 735
TauI GCSGC 3 cut(s) 152, 155, 158
TfiI GAWTC 3 cut(s) 288, 502, 688
Tru1I TTAA 5 cut(s) 101, 509, 669, 777, 864
Tru9I TTAA 5 cut(s) 101, 509, 669, 777, 864
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 2 cut(s) 853, 920
TseI GCWGC 3 cut(s) 413, 416, 825
Tsp45I GTSAC 2 cut(s) 853, 920
TspDTI ATGAA 1 cut(s) 208
TspRI CASTG 1 cut(s) 150
Tth111I GACNNNGTC 1 cut(s) 806
Van91I CCANNNNNTGG 1 cut(s) 547
XapI RAATTY 2 cut(s) 325, 484
XceI RCATGY 2 cut(s) 8, 12
XmiI GTMKAC 2 cut(s) 461, 956
XspI CTAG 1 cut(s) 728
Zsp2I ATGCAT 3 cut(s) 6, 10, 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.