Rh6BG007800

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016165
Physical Location & Seq
Forward (+)
1111480 .. 1112753
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG007800.1

Sequence Viewer

Length: 855 bp
ATGCTTGGAAATTTGCTGGGTCTTCCTTATGCTCCAGCCTTTGCAGATCCTAATACAAAAGGAAACAGAATGCTCAGGGGAGTCAATTATGCTTCAGCAGCTGCTGGCATACTCGATGAGACAGGCCGGCACTATGGAGATCGGTATACCCTAAGCCGGCAAGTGTTGAATTTCGAGACCACCTTGAATCAGTTAAGAACGATGATGGGGGGAACTAACCTGACCCAGTACCTGGCTAAGTCGATTGCCGTTTTGGTATTTGGGAGCAATGACTACATCAACAACTACCTCATGCCTTCCTTCTATTCTTCCAGCTACACTTACACTCCTCTTGCCTTTGCCAACCTTCTCCTTAATCGCTATGCCACACAGATTCTGGCTTTGCACGGTCTTGGATTGAGGAAGTTTGTGCTAGTAGGAATTGGGCCTTTGGGTTGCATTCCTAACCAAAGAGCATCAGGTAAGGCCCAGCCTGGAAGGTGTGTTGACAATGTCAATCAGATCCTTGGCAGCTTCAATCAAGGGCTCAGATCGCTCGTCACCCAACTTAACAACAACCATCCTGGTGCCATCTTTGTGTACGGCAATGCTTATGGCGCTTTTGGTGACATTCTGAATAACCCTGCAGCCTATGGTTTCAGTGTGATTGATAGGGCTTGCTGTGGAATTGGGAGGAACCAAGGGCAGATAACTTGTCTTCCATTTGCAGTTCCATGCTCAAATAGAAATCAATATATGTTTTGGGATGCTTTCCACCCAACTGAAGCTGCAAACGCAGTCCTTGCTTGGCGAGCTTTTAATGGCCCGCCCTCTGATAGTTACCCCATCAATGTCCAACAAATGGCTCTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

284

Amino Acids

30.94

Weight (kDa)

9.15

Isoelectric Point (pI)

27.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 9 - 262 5.5e-24 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71250
fragaria_vesca FvH4_2g00180
malus_domestica MD10G1000500.v1.1
prunus_persica Prupe.8G001600_v2.0.a1 Prupe.8G001600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249471
rosa_laevigata RLG00000015578
rosa_multiflora Rmu_ssc0000459.1_g000021
rosa_roxburghii Rroxscaffold_7G00217670
rosa_rugosa Rorug05G0492600
rosa_samantha Rh6AG002300 Rh6BG007800 Rh6CG001500 Rh6DG001500
rosa_wichuraiana Rw6G000290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 566
AccB7I CCANNNNNTGG 2 cut(s) 232, 841
AccI GTMKAC 1 cut(s) 146
AciI CCGC 1 cut(s) 806
AclWI GGATC 2 cut(s) 41, 496
AcsI RAATTY 2 cut(s) 10, 169
AcuI CTGAAG 2 cut(s) 78, 783
AfaI GTAC 2 cut(s) 230, 581
AfiI CCNNNNNNNGG 3 cut(s) 156, 232, 841
AgsI TTSAA 3 cut(s) 169, 187, 517
AjnI CCWGG 3 cut(s) 231, 472, 562
AluBI AGCT 5 cut(s) 101, 315, 513, 767, 794
AluI AGCT 5 cut(s) 101, 315, 513, 767, 794
Alw26I GTCTC 2 cut(s) 113, 170
AlwI GGATC 2 cut(s) 41, 496
AlwNI CAGNNNCTG 4 cut(s) 101, 104, 232, 376
AoxI GGCC 4 cut(s) 124, 425, 465, 802
ApeKI GCWGC 5 cut(s) 98, 101, 510, 626, 767
ApoI RAATTY 2 cut(s) 10, 169
AspLEI GCGC 1 cut(s) 599
AspS9I GGNCC 3 cut(s) 425, 466, 803
AsuHPI GGTGA 2 cut(s) 532, 617
BanI GGYRCC 1 cut(s) 566
BanII GRGCYC 1 cut(s) 528
BbsI GAAGAC 2 cut(s) 14, 689
BbvI GCAGC 5 cut(s) 88, 110, 522, 638, 754
BccI CCATC 4 cut(s) 199, 567, 578, 833
BceAI ACGGC 2 cut(s) 233, 598
BciT130I CCWGG 3 cut(s) 233, 474, 564
BcoDI GTCTC 2 cut(s) 113, 170
BfaI CTAG 1 cut(s) 413
BfmI CTRYAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 600
BisI GCNGC 5 cut(s) 99, 102, 511, 627, 768
BlsI GCNGC 5 cut(s) 100, 103, 512, 628, 769
Bme1390I CCNGG 3 cut(s) 233, 474, 564
BmgT120I GGNCC 3 cut(s) 425, 466, 803
BmiI GGNNCC 2 cut(s) 568, 677
BmrFI CCNGG 3 cut(s) 233, 474, 564
BmrI ACTGGG 1 cut(s) 220
BmsI GCATC 2 cut(s) 464, 736
BmuI ACTGGG 1 cut(s) 220
BpiI GAAGAC 2 cut(s) 14, 689
BpmI CTGGAG 1 cut(s) 18
Bpu10I CCTNAGC 2 cut(s) 74, 152
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 505, 679
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 232, 841
Bse118I RCCGGY 2 cut(s) 126, 156
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 2 cut(s) 274, 592
BseBI CCWGG 3 cut(s) 233, 474, 564
BseDI CCNNGG 2 cut(s) 505, 679
BseGI GGATG 2 cut(s) 559, 751
BseLI CCNNNNNNNGG 3 cut(s) 156, 232, 841
BseMI GCAATG 2 cut(s) 274, 592
BseMII CTCAG 2 cut(s) 88, 541
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 318
BseXI GCAGC 5 cut(s) 88, 110, 522, 638, 754
BseYI CCCAGC 2 cut(s) 16, 468
BshFI GGCC 4 cut(s) 126, 427, 467, 804
BshNI GGYRCC 1 cut(s) 566
BsiSI CCGG 2 cut(s) 127, 157
BslI CCNNNNNNNGG 3 cut(s) 156, 232, 841
BsmAI GTCTC 2 cut(s) 113, 170
BsmI GAATGC 2 cut(s) 75, 438
BsnI GGCC 4 cut(s) 126, 427, 467, 804
Bso31I GGTCTC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 528
Bsp143I GATC 4 cut(s) 46, 139, 501, 530
BspACI CCGC 1 cut(s) 806
BspANI GGCC 4 cut(s) 126, 427, 467, 804
BspCNI CTCAG 2 cut(s) 87, 540
BspLI GGNNCC 2 cut(s) 568, 677
BspMAI CTGCAG 1 cut(s) 628
BspPI GGATC 2 cut(s) 41, 496
BspT107I GGYRCC 1 cut(s) 566
BspTNI GGTCTC 1 cut(s) 170
BsrDI GCAATG 2 cut(s) 274, 592
BsrFI RCCGGY 2 cut(s) 126, 156
BsrI ACTGG 1 cut(s) 226
BssAI RCCGGY 2 cut(s) 126, 156
BssECI CCNNGG 2 cut(s) 505, 679
BssMI GATC 4 cut(s) 46, 139, 501, 530
BssNAI GTATAC 1 cut(s) 147
BssT1I CCWWGG 2 cut(s) 505, 679
Bst1107I GTATAC 1 cut(s) 147
Bst2UI CCWGG 3 cut(s) 233, 474, 564
Bst4CI ACNGT 1 cut(s) 389
BstAPI GCANNNNNTGC 1 cut(s) 782
BstC8I GCNNGC 6 cut(s) 106, 128, 158, 658, 792, 806
BstDEI CTNAG 4 cut(s) 74, 152, 237, 527
BstF5I GGATG 2 cut(s) 559, 751
BstH2I RGCGCY 1 cut(s) 600
BstHHI GCGC 1 cut(s) 599
BstKTI GATC 4 cut(s) 49, 142, 504, 533
BstMAI GTCTC 2 cut(s) 113, 170
BstMBI GATC 4 cut(s) 46, 139, 501, 530
BstMWI GCNNNNNNNGC 6 cut(s) 98, 532, 596, 773, 782, 791
BstNI CCWGG 3 cut(s) 233, 474, 564
BstSCI CCNGG 3 cut(s) 231, 472, 562
BstSFI CTRYAG 1 cut(s) 624
BstV1I GCAGC 5 cut(s) 88, 110, 522, 638, 754
BstV2I GAAGAC 2 cut(s) 14, 689
BstX2I RGATCY 2 cut(s) 46, 501
BstYI RGATCY 2 cut(s) 46, 501
BstZ17I GTATAC 1 cut(s) 147
BsuRI GGCC 4 cut(s) 126, 427, 467, 804
BtsCI GGATG 2 cut(s) 559, 751
BtsIMutI CAGTG 1 cut(s) 646
Cac8I GCNNGC 6 cut(s) 106, 128, 158, 658, 792, 806
CaiI CAGNNNCTG 4 cut(s) 101, 104, 232, 376
CfoI GCGC 1 cut(s) 599
Cfr10I RCCGGY 2 cut(s) 126, 156
Cfr13I GGNCC 3 cut(s) 425, 466, 803
Csp6I GTAC 2 cut(s) 229, 580
CviAII CATG 2 cut(s) 292, 714
CviQI GTAC 2 cut(s) 229, 580
DdeI CTNAG 4 cut(s) 74, 152, 237, 527
DpnI GATC 4 cut(s) 48, 141, 503, 532
DpnII GATC 4 cut(s) 46, 139, 501, 530
Eco130I CCWWGG 2 cut(s) 505, 679
Eco24I GRGCYC 1 cut(s) 528
Eco31I GGTCTC 1 cut(s) 170
Eco57I CTGAAG 2 cut(s) 78, 783
EcoRII CCWGG 3 cut(s) 231, 472, 562
EcoT14I CCWWGG 2 cut(s) 505, 679
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 2 cut(s) 505, 679
FaeI CATG 2 cut(s) 295, 717
FatI CATG 2 cut(s) 291, 713
FauI CCCGC 1 cut(s) 813
FblI GTMKAC 1 cut(s) 146
Fnu4HI GCNGC 5 cut(s) 99, 102, 511, 627, 768
FokI GGATG 2 cut(s) 546, 758
FriOI GRGCYC 1 cut(s) 528
Fsp4HI GCNGC 5 cut(s) 99, 102, 511, 627, 768
FspBI CTAG 1 cut(s) 413
GlaI GCGC 1 cut(s) 598
GluI GCNGC 5 cut(s) 99, 102, 511, 627, 768
GsaI CCCAGC 2 cut(s) 20, 472
GsuI CTGGAG 1 cut(s) 18
HaeII RGCGCY 1 cut(s) 600
HaeIII GGCC 4 cut(s) 126, 427, 467, 804
HapII CCGG 2 cut(s) 127, 157
HhaI GCGC 1 cut(s) 599
Hin1II CATG 2 cut(s) 295, 717
Hin6I GCGC 1 cut(s) 597
HinP1I GCGC 1 cut(s) 597
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 3 cut(s) 81, 187, 373
HpaII CCGG 2 cut(s) 127, 157
HphI GGTGA 2 cut(s) 532, 617
Hpy166II GTNNAC 3 cut(s) 147, 487, 580
Hpy188I TCNGA 4 cut(s) 501, 530, 615, 814
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 3 cut(s) 147, 487, 580
HpyAV CCTTC 4 cut(s) 306, 310, 356, 471
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4V TGCA 6 cut(s) 44, 385, 438, 626, 707, 770
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 532, 596, 773, 782, 791
HpyF3I CTNAG 4 cut(s) 74, 152, 237, 527
Hsp92II CATG 2 cut(s) 295, 717
HspAI GCGC 1 cut(s) 597
KroI GCCGGC 2 cut(s) 126, 156
KroNI GCCGGC 2 cut(s) 128, 158
Kzo9I GATC 4 cut(s) 46, 139, 501, 530
LmnI GCTCC 2 cut(s) 37, 264
Lsp1109I GCAGC 5 cut(s) 88, 110, 522, 638, 754
LweI GCATC 2 cut(s) 464, 736
MaeI CTAG 1 cut(s) 413
MaeIII GTNAC 3 cut(s) 538, 605, 818
MalI GATC 4 cut(s) 48, 141, 503, 532
MboI GATC 4 cut(s) 46, 139, 501, 530
MboII GAAGA 3 cut(s) 14, 300, 689
MflI RGATCY 2 cut(s) 46, 501
MhlI GDGCHC 1 cut(s) 528
MluCI AATT 5 cut(s) 10, 85, 169, 420, 666
MlyI GAGTC 1 cut(s) 90
MnlI CCTC 5 cut(s) 299, 339, 393, 666, 820
MroNI GCCGGC 2 cut(s) 126, 156
MseI TTAA 4 cut(s) 194, 354, 549, 798
MslI CAYNNNNRTG 2 cut(s) 564, 575
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 2 cut(s) 127, 157
MspR9I CCNGG 3 cut(s) 233, 474, 564
Mva1269I GAATGC 2 cut(s) 75, 438
MvaI CCWGG 3 cut(s) 233, 474, 564
MwoI GCNNNNNNNGC 6 cut(s) 98, 532, 596, 773, 782, 791
NaeI GCCGGC 2 cut(s) 128, 158
NdeII GATC 4 cut(s) 46, 139, 501, 530
NgoMIV GCCGGC 2 cut(s) 126, 156
NlaIII CATG 2 cut(s) 295, 717
NlaIV GGNNCC 2 cut(s) 568, 677
NmuCI GTSAC 2 cut(s) 538, 605
PctI GAATGC 2 cut(s) 75, 438
PdiI GCCGGC 2 cut(s) 128, 158
PfeI GAWTC 2 cut(s) 187, 373
PflFI GACNNNGTC 1 cut(s) 491
PflMI CCANNNNNTGG 2 cut(s) 232, 841
PkrI GCNGC 5 cut(s) 100, 103, 512, 628, 769
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Psp6I CCWGG 3 cut(s) 231, 472, 562
PspFI CCCAGC 2 cut(s) 16, 468
PspGI CCWGG 3 cut(s) 231, 472, 562
PspN4I GGNNCC 2 cut(s) 568, 677
PspPI GGNCC 3 cut(s) 425, 466, 803
PstI CTGCAG 1 cut(s) 628
PstNI CAGNNNCTG 4 cut(s) 101, 104, 232, 376
PsuI RGATCY 2 cut(s) 46, 501
PsyI GACNNNGTC 1 cut(s) 491
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 2 cut(s) 230, 581
RsaNI GTAC 2 cut(s) 229, 580
RseI CAYNNNNRTG 2 cut(s) 564, 575
SaqAI TTAA 4 cut(s) 194, 354, 549, 798
SatI GCNGC 5 cut(s) 99, 102, 511, 627, 768
Sau3AI GATC 4 cut(s) 46, 139, 501, 530
Sau96I GGNCC 3 cut(s) 425, 466, 803
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 3 cut(s) 233, 474, 564
SduI GDGCHC 1 cut(s) 528
SfaNI GCATC 2 cut(s) 464, 736
SfcI CTRYAG 1 cut(s) 624
SmiMI CAYNNNNRTG 2 cut(s) 564, 575
Sse9I AATT 5 cut(s) 10, 85, 169, 420, 666
SsiI CCGC 1 cut(s) 806
SspMI CTAG 1 cut(s) 413
StyD4I CCNGG 3 cut(s) 231, 472, 562
StyI CCWWGG 2 cut(s) 505, 679
TaaI ACNGT 1 cut(s) 389
TaqI TCGA 3 cut(s) 114, 174, 242
TasI AATT 5 cut(s) 10, 85, 169, 420, 666
TfiI GAWTC 2 cut(s) 187, 373
Tru1I TTAA 4 cut(s) 194, 354, 549, 798
Tru9I TTAA 4 cut(s) 194, 354, 549, 798
TscAI CASTG 1 cut(s) 646
TseFI GTSAC 2 cut(s) 538, 605
TseI GCWGC 5 cut(s) 98, 101, 510, 626, 767
Tsp45I GTSAC 2 cut(s) 538, 605
TspRI CASTG 1 cut(s) 646
Tth111I GACNNNGTC 1 cut(s) 491
Van91I CCANNNNNTGG 2 cut(s) 232, 841
XapI RAATTY 2 cut(s) 10, 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 373
XmiI GTMKAC 1 cut(s) 146
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.