Rroxscaffold_7G00217670

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016165
Physical Location & Seq
Forward (+)
68154686 .. 68156161
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00217670.1

Sequence Viewer

Length: 1041 bp
ATGGGATTTGGGGAGTCAGCGGCGGCAGCGCAGGTTCCGGCAATGTTTGCGTTTGGGGACTCACTCATTGATGCTGGCAACAACAACTTCATAAGCTCCATCGCAAAATCCAATTATTATCCTTACGGTATCGATTTCAGGGGAGGCCCCTCCGGCAGATTCACCAATGGAAGAACTTTCGTTGATATGCTTGGAAATTTGCTGGGTCTTCCTTATGCTCCAGCCTTTGCAGATCCTAATACAAAAGGAAACAGAATGCTCAGGGGAGTCAATTATGCTTCGGCAGCTGCTGGCATACTCGATGAGACAGGCCGGCACTATGGAGATCGGTATACCCTAAGCCGGCAAGTGTTGAATTTCGAGACCACCTTGAATCAGTTAAGAACGATGATGGGGGAAACTAACCTGACCCAGTACCTGGCTAAGTCGATTGCCGTTTTGGTATTTGGGAGCAATGACTACATCAACAACTACCTCATGCCTTCTCTCTATTCTTCCAGCTACACTTACACTCCTCCTGCCTTTGCCAACCTTCTCCTTAATCGCTATGCCACGCAGATTCTGGCTTTGCACGGTCTTGGATTGAGGAAGTTTGTGCTAGTAGGAATTGGGCCTTTGGGTTGCATTCCTAACCAAAGAGCATCAGGTAAGGCCCAGCCTGGAAGGTGTGTTGACAATGTCAATCAGATCCTTGGCAGCTTCAATCAAGGGCTCCGATCGCTCGTCACCCAACTTAACAACAACCGTCCTGGTGCCATCTTTGTGTACGGCAATGCTTATGGCGCTTTTGGTGACATTCTGAATAACCCTGCACCCTATGGTTTCAGTGTGATCGATAGGGCTTGCTGTGGAATTGGGAGGAACCAAGGGCAGATAACTTGTCTTCCATTTGCAGTTCCATGCTCAAATAGAAATCAATATATGTTTTGGGATGCTTTCCACCCAACTGAAGCTGCAAACGCAGTCCTTGCTTGGCGAGCTTTTAATGGCCCGCCCTCTGATAGTTACCCCATCAATGTCCAACAAATGGCTCTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

346

Amino Acids

37.54

Weight (kDa)

8.98

Isoelectric Point (pI)

26.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 16 - 324 2.1e-33 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71250
fragaria_vesca FvH4_2g00180
malus_domestica MD10G1000500.v1.1
prunus_persica Prupe.8G001600_v2.0.a1 Prupe.8G001600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249471
rosa_laevigata RLG00000015578
rosa_multiflora Rmu_ssc0000459.1_g000021
rosa_roxburghii Rroxscaffold_7G00217670
rosa_rugosa Rorug05G0492600
rosa_samantha Rh6AG002300 Rh6BG007800 Rh6CG001500 Rh6DG001500
rosa_wichuraiana Rw6G000290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AccB1I GGYRCC 1 cut(s) 752
AccB7I CCANNNNNTGG 2 cut(s) 418, 1027
AccI GTMKAC 1 cut(s) 332
AciI CCGC 3 cut(s) 20, 23, 992
AclWI GGATC 2 cut(s) 227, 682
AcsI RAATTY 2 cut(s) 196, 355
AcuI CTGAAG 1 cut(s) 969
AfaI GTAC 2 cut(s) 416, 767
AfiI CCNNNNNNNGG 3 cut(s) 342, 418, 1027
AgsI TTSAA 3 cut(s) 355, 373, 703
AjnI CCWGG 3 cut(s) 417, 658, 748
AluBI AGCT 6 cut(s) 96, 287, 501, 699, 953, 980
AluI AGCT 6 cut(s) 96, 287, 501, 699, 953, 980
Alw26I GTCTC 2 cut(s) 299, 356
AlwI GGATC 2 cut(s) 227, 682
AlwNI CAGNNNCTG 3 cut(s) 290, 418, 562
AoxI GGCC 5 cut(s) 145, 310, 611, 651, 988
ApeKI GCWGC 5 cut(s) 26, 284, 287, 696, 953
ApoI RAATTY 2 cut(s) 196, 355
AspLEI GCGC 2 cut(s) 31, 785
AspS9I GGNCC 4 cut(s) 146, 611, 652, 989
AsuHPI GGTGA 3 cut(s) 154, 718, 803
BanI GGYRCC 1 cut(s) 752
BanII GRGCYC 1 cut(s) 714
BbsI GAAGAC 2 cut(s) 200, 875
BbvI GCAGC 5 cut(s) 38, 274, 296, 708, 940
BccI CCATC 4 cut(s) 107, 385, 764, 1019
BceAI ACGGC 2 cut(s) 419, 784
BciT130I CCWGG 3 cut(s) 419, 660, 750
BcoDI GTCTC 2 cut(s) 299, 356
BfaI CTAG 1 cut(s) 599
BfoI RGCGCY 1 cut(s) 786
BfuAI ACCTGC 1 cut(s) 22
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 7 cut(s) 21, 24, 27, 285, 288, 697, 954
BlsI GCNGC 7 cut(s) 22, 25, 28, 286, 289, 698, 955
Bme1390I CCNGG 3 cut(s) 419, 660, 750
BmgT120I GGNCC 4 cut(s) 146, 611, 652, 989
BmiI GGNNCC 5 cut(s) 36, 148, 713, 754, 863
BmrFI CCNGG 3 cut(s) 419, 660, 750
BmrI ACTGGG 1 cut(s) 406
BmsI GCATC 3 cut(s) 61, 650, 922
BmuI ACTGGG 1 cut(s) 406
BpiI GAAGAC 2 cut(s) 200, 875
BpmI CTGGAG 1 cut(s) 204
Bpu10I CCTNAGC 2 cut(s) 260, 338
Bsa29I ATCGAT 2 cut(s) 132, 834
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 691, 865
BsaXI ACNNNNNCTCC 2 cut(s) 496, 526
Bsc4I CCNNNNNNNGG 3 cut(s) 342, 418, 1027
Bse118I RCCGGY 2 cut(s) 312, 342
Bse1I ACTGG 1 cut(s) 412
Bse3DI GCAATG 3 cut(s) 48, 460, 778
BseBI CCWGG 3 cut(s) 419, 660, 750
BseCI ATCGAT 2 cut(s) 132, 834
BseDI CCNNGG 2 cut(s) 691, 865
BseGI GGATG 1 cut(s) 937
BseLI CCNNNNNNNGG 3 cut(s) 342, 418, 1027
BseMI GCAATG 3 cut(s) 48, 460, 778
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 504
BseXI GCAGC 5 cut(s) 38, 274, 296, 708, 940
BseYI CCCAGC 2 cut(s) 202, 654
BsgI GTGCAG 1 cut(s) 795
Bsh1285I CGRYCG 1 cut(s) 719
BshFI GGCC 5 cut(s) 147, 312, 613, 653, 990
BshNI GGYRCC 1 cut(s) 752
BshVI ATCGAT 2 cut(s) 132, 834
BsiEI CGRYCG 1 cut(s) 719
BsiSI CCGG 4 cut(s) 38, 153, 313, 343
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 3 cut(s) 342, 418, 1027
BsmAI GTCTC 2 cut(s) 299, 356
BsmFI GGGAC 1 cut(s) 71
BsmI GAATGC 2 cut(s) 261, 624
BsnI GGCC 5 cut(s) 147, 312, 613, 653, 990
Bso31I GGTCTC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 714
Bsp143I GATC 5 cut(s) 232, 325, 687, 716, 831
BspACI CCGC 3 cut(s) 20, 23, 992
BspANI GGCC 5 cut(s) 147, 312, 613, 653, 990
BspCNI CTCAG 1 cut(s) 273
BspDI ATCGAT 2 cut(s) 132, 834
BspLI GGNNCC 5 cut(s) 36, 148, 713, 754, 863
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 2 cut(s) 227, 682
BspT107I GGYRCC 1 cut(s) 752
BspTNI GGTCTC 1 cut(s) 356
BsrDI GCAATG 3 cut(s) 48, 460, 778
BsrFI RCCGGY 2 cut(s) 312, 342
BsrI ACTGG 1 cut(s) 412
BssAI RCCGGY 2 cut(s) 312, 342
BssECI CCNNGG 2 cut(s) 691, 865
BssMI GATC 5 cut(s) 232, 325, 687, 716, 831
BssNAI GTATAC 1 cut(s) 333
BssT1I CCWWGG 2 cut(s) 691, 865
Bst1107I GTATAC 1 cut(s) 333
Bst2UI CCWGG 3 cut(s) 419, 660, 750
Bst4CI ACNGT 3 cut(s) 128, 575, 746
BstAPI GCANNNNNTGC 2 cut(s) 47, 968
BstC8I GCNNGC 7 cut(s) 76, 292, 314, 344, 844, 978, 992
BstDEI CTNAG 3 cut(s) 260, 338, 423
BstF5I GGATG 1 cut(s) 937
BstH2I RGCGCY 1 cut(s) 786
BstHHI GCGC 2 cut(s) 31, 785
BstKTI GATC 5 cut(s) 235, 328, 690, 719, 834
BstMAI GTCTC 2 cut(s) 299, 356
BstMBI GATC 5 cut(s) 232, 325, 687, 716, 831
BstMCI CGRYCG 1 cut(s) 719
BstMWI GCNNNNNNNGC 9 cut(s) 26, 47, 153, 284, 718, 782, 959, 968, 977
BstNI CCWGG 3 cut(s) 419, 660, 750
BstSCI CCNGG 3 cut(s) 417, 658, 748
BstV1I GCAGC 5 cut(s) 38, 274, 296, 708, 940
BstV2I GAAGAC 2 cut(s) 200, 875
BstX2I RGATCY 2 cut(s) 232, 687
BstYI RGATCY 2 cut(s) 232, 687
BstZ17I GTATAC 1 cut(s) 333
Bsu15I ATCGAT 2 cut(s) 132, 834
BsuRI GGCC 5 cut(s) 147, 312, 613, 653, 990
BsuTUI ATCGAT 2 cut(s) 132, 834
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 937
BtsIMutI CAGTG 1 cut(s) 832
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 7 cut(s) 76, 292, 314, 344, 844, 978, 992
CaiI CAGNNNCTG 3 cut(s) 290, 418, 562
CfoI GCGC 2 cut(s) 31, 785
Cfr10I RCCGGY 2 cut(s) 312, 342
Cfr13I GGNCC 4 cut(s) 146, 611, 652, 989
ClaI ATCGAT 2 cut(s) 132, 834
Csp6I GTAC 2 cut(s) 415, 766
CviAII CATG 2 cut(s) 478, 900
CviQI GTAC 2 cut(s) 415, 766
DdeI CTNAG 3 cut(s) 260, 338, 423
DpnI GATC 5 cut(s) 234, 327, 689, 718, 833
DpnII GATC 5 cut(s) 232, 325, 687, 716, 831
Eco130I CCWWGG 2 cut(s) 691, 865
Eco24I GRGCYC 1 cut(s) 714
Eco31I GGTCTC 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 969
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 3 cut(s) 417, 658, 748
EcoT14I CCWWGG 2 cut(s) 691, 865
EcoT38I GRGCYC 1 cut(s) 714
ErhI CCWWGG 2 cut(s) 691, 865
FaeI CATG 2 cut(s) 481, 903
FaqI GGGAC 1 cut(s) 71
FatI CATG 2 cut(s) 477, 899
FauI CCCGC 1 cut(s) 999
FblI GTMKAC 1 cut(s) 332
Fnu4HI GCNGC 7 cut(s) 21, 24, 27, 285, 288, 697, 954
FokI GGATG 1 cut(s) 944
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 7 cut(s) 21, 24, 27, 285, 288, 697, 954
FspBI CTAG 1 cut(s) 599
GlaI GCGC 2 cut(s) 30, 784
GluI GCNGC 7 cut(s) 21, 24, 27, 285, 288, 697, 954
GsaI CCCAGC 2 cut(s) 206, 658
GsuI CTGGAG 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 786
HaeIII GGCC 5 cut(s) 147, 312, 613, 653, 990
HapII CCGG 4 cut(s) 38, 153, 313, 343
HhaI GCGC 2 cut(s) 31, 785
Hin1II CATG 2 cut(s) 481, 903
Hin6I GCGC 2 cut(s) 29, 783
HinP1I GCGC 2 cut(s) 29, 783
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HinfI GANTC 6 cut(s) 14, 59, 159, 267, 373, 559
HpaII CCGG 4 cut(s) 38, 153, 313, 343
HphI GGTGA 3 cut(s) 154, 718, 803
Hpy166II GTNNAC 3 cut(s) 333, 673, 766
Hpy188I TCNGA 4 cut(s) 687, 716, 801, 1000
Hpy188III TCNNGA 1 cut(s) 361
Hpy8I GTNNAC 3 cut(s) 333, 673, 766
HpyAV CCTTC 3 cut(s) 492, 542, 657
HpyCH4III ACNGT 3 cut(s) 128, 575, 746
HpyCH4V TGCA 6 cut(s) 230, 571, 624, 812, 893, 956
HpyF10VI GCNNNNNNNGC 9 cut(s) 26, 47, 153, 284, 718, 782, 959, 968, 977
HpyF3I CTNAG 3 cut(s) 260, 338, 423
Hsp92II CATG 2 cut(s) 481, 903
HspAI GCGC 2 cut(s) 29, 783
KroI GCCGGC 2 cut(s) 312, 342
KroNI GCCGGC 2 cut(s) 314, 344
Kzo9I GATC 5 cut(s) 232, 325, 687, 716, 831
LmnI GCTCC 4 cut(s) 101, 223, 450, 717
Lsp1109I GCAGC 5 cut(s) 38, 274, 296, 708, 940
LweI GCATC 3 cut(s) 61, 650, 922
MaeI CTAG 1 cut(s) 599
MaeIII GTNAC 3 cut(s) 724, 791, 1004
MalI GATC 5 cut(s) 234, 327, 689, 718, 833
MboI GATC 5 cut(s) 232, 325, 687, 716, 831
MboII GAAGA 4 cut(s) 183, 200, 486, 875
MflI RGATCY 2 cut(s) 232, 687
MhlI GDGCHC 1 cut(s) 714
MluCI AATT 6 cut(s) 112, 196, 271, 355, 606, 852
MlyI GAGTC 3 cut(s) 23, 53, 276
MnlI CCTC 7 cut(s) 137, 160, 485, 525, 579, 852, 1006
MroNI GCCGGC 2 cut(s) 312, 342
MseI TTAA 4 cut(s) 380, 540, 735, 984
MslI CAYNNNNRTG 1 cut(s) 761
MspA1I CMGCKG 2 cut(s) 20, 287
MspI CCGG 4 cut(s) 38, 153, 313, 343
MspR9I CCNGG 3 cut(s) 419, 660, 750
Mva1269I GAATGC 2 cut(s) 261, 624
MvaI CCWGG 3 cut(s) 419, 660, 750
MwoI GCNNNNNNNGC 9 cut(s) 26, 47, 153, 284, 718, 782, 959, 968, 977
NaeI GCCGGC 2 cut(s) 314, 344
NdeII GATC 5 cut(s) 232, 325, 687, 716, 831
NgoMIV GCCGGC 2 cut(s) 312, 342
NlaIII CATG 2 cut(s) 481, 903
NlaIV GGNNCC 5 cut(s) 36, 148, 713, 754, 863
NmuCI GTSAC 2 cut(s) 724, 791
PctI GAATGC 2 cut(s) 261, 624
PdiI GCCGGC 2 cut(s) 314, 344
PfeI GAWTC 3 cut(s) 159, 373, 559
PflFI GACNNNGTC 1 cut(s) 677
PflMI CCANNNNNTGG 2 cut(s) 418, 1027
PkrI GCNGC 7 cut(s) 22, 25, 28, 286, 289, 698, 955
Ple19I CGATCG 1 cut(s) 719
PleI GAGTC 3 cut(s) 22, 53, 275
PpsI GAGTC 3 cut(s) 22, 53, 275
Psp6I CCWGG 3 cut(s) 417, 658, 748
PspFI CCCAGC 2 cut(s) 202, 654
PspGI CCWGG 3 cut(s) 417, 658, 748
PspN4I GGNNCC 5 cut(s) 36, 148, 713, 754, 863
PspPI GGNCC 4 cut(s) 146, 611, 652, 989
PstNI CAGNNNCTG 3 cut(s) 290, 418, 562
PsuI RGATCY 2 cut(s) 232, 687
PsyI GACNNNGTC 1 cut(s) 677
PvuI CGATCG 1 cut(s) 719
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 2 cut(s) 416, 767
RsaNI GTAC 2 cut(s) 415, 766
RseI CAYNNNNRTG 1 cut(s) 761
SaqAI TTAA 4 cut(s) 380, 540, 735, 984
SatI GCNGC 7 cut(s) 21, 24, 27, 285, 288, 697, 954
Sau3AI GATC 5 cut(s) 232, 325, 687, 716, 831
Sau96I GGNCC 4 cut(s) 146, 611, 652, 989
SchI GAGTC 3 cut(s) 23, 53, 276
ScrFI CCNGG 3 cut(s) 419, 660, 750
SduI GDGCHC 1 cut(s) 714
SfaNI GCATC 3 cut(s) 61, 650, 922
SmiMI CAYNNNNRTG 1 cut(s) 761
Sse9I AATT 6 cut(s) 112, 196, 271, 355, 606, 852
SsiI CCGC 3 cut(s) 20, 23, 992
SspMI CTAG 1 cut(s) 599
StyD4I CCNGG 3 cut(s) 417, 658, 748
StyI CCWWGG 2 cut(s) 691, 865
TaaI ACNGT 3 cut(s) 128, 575, 746
TaqI TCGA 5 cut(s) 132, 300, 360, 428, 834
TasI AATT 6 cut(s) 112, 196, 271, 355, 606, 852
TauI GCSGC 2 cut(s) 23, 26
TfiI GAWTC 3 cut(s) 159, 373, 559
Tru1I TTAA 4 cut(s) 380, 540, 735, 984
Tru9I TTAA 4 cut(s) 380, 540, 735, 984
TscAI CASTG 1 cut(s) 832
TseFI GTSAC 2 cut(s) 724, 791
TseI GCWGC 5 cut(s) 26, 284, 287, 696, 953
Tsp45I GTSAC 2 cut(s) 724, 791
TspDTI ATGAA 1 cut(s) 79
TspRI CASTG 1 cut(s) 832
Tth111I GACNNNGTC 1 cut(s) 677
Van91I CCANNNNNTGG 2 cut(s) 418, 1027
XapI RAATTY 2 cut(s) 196, 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 332
XspI CTAG 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.