RLG00000015578

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016165
Physical Location & Seq
Forward (+)
68090072 .. 68091651
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015578

Sequence Viewer

Length: 1017 bp
ATGGGTGGTAAGAAGATGGTAGCGATTTGTAATGACGGGCTGTGGTTAGCCAATTATACTATCGGAATGGTGTTTGCAATGATCTTAATTAGTAGTAGTATGGTAGCCGGCATGGGATTTGGGGAGTCAGCGGCGGCGGCGCAGTTTAGAGCCCAGCTACATCCCTCGAGAAATTTGCTGGGTCTTCCTTATGCTCCAGCCTTTGCAGATCCTAATACAAAAGGAAACAGAATGCTCAGGGGAGTCAATTATGCTTCAGCAGCTGCTGGCATACTCGATGAGACAGGCCAGCACTATGGAGATCGGTATACCCTAAGCCGGCAAGTGTTGAATTTCGAGACCACCTTGAATCAGTTAAGAACGATGATGGGGGGAACTAACCTGACCCAGTACCTGGCTAAGTCGATTGCCGTTTTGGTATTTGGGAGCAATGACTACATCAACAACTACCTCATGCCTTCCCTCTATTGTTCCAGCTACACTTACACTCCTCCTGCCTTTGCCAACCATCTCCTTAATCGCTATGCCACACAGATTCTGGCTTTGCACGGTCTTGGATTGAGGAAGTTTGTACTAGTAGGAATTGGGCCTTTGGGTTGCATTCCCAACCAAAGAGCATCAGGTAAGGCCCAGCCCGGAAGGTGTGTTGACAATGTCAATCAGATCCTTGGCAGCTTCAATCAAGGCCTCAGATCGCTCGTCACCCAACTTAACAACAACCATCCTGGTGCCATCTTTGTGTACGGCAATGCTTATGGCGCTTTCGGTGACATTCTGAATAACCCTGCACCCTATGGTTTCAGTGTGATTGATAGGGCTTGCTGTGGAATTGGGAGGAACCAAGGGCAGATAACTTGTCTTCCATTTGCAGTTCCATGCTCAAATAGAAATCAATATATGTTTTGGGATGCTTTCCACCCAACTGAAGCTGCAAACGCAGTCCTTGCTTGGCGAGCTTTTAATGGCCCGCCCTCTGATAGTTACCCCATCAATGTCCAACAGATGGCTCTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

339

Amino Acids

36.62

Weight (kDa)

9.1

Isoelectric Point (pI)

29.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 63 - 316 3.7e-24 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71250
fragaria_vesca FvH4_2g00180
malus_domestica MD10G1000500.v1.1
prunus_persica Prupe.8G001600_v2.0.a1 Prupe.8G001600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249471
rosa_laevigata RLG00000015578
rosa_multiflora Rmu_ssc0000459.1_g000021
rosa_roxburghii Rroxscaffold_7G00217670
rosa_rugosa Rorug05G0492600
rosa_samantha Rh6AG002300 Rh6BG007800 Rh6CG001500 Rh6DG001500
rosa_wichuraiana Rw6G000290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 728
AccB7I CCANNNNNTGG 2 cut(s) 394, 1003
AccI GTMKAC 1 cut(s) 308
AciI CCGC 4 cut(s) 131, 134, 137, 968
AclWI GGATC 2 cut(s) 203, 658
AcsI RAATTY 2 cut(s) 172, 331
AcuI CTGAAG 2 cut(s) 240, 945
AfaI GTAC 3 cut(s) 392, 573, 743
AfiI CCNNNNNNNGG 3 cut(s) 318, 394, 1003
AgsI TTSAA 3 cut(s) 331, 349, 679
AhlI ACTAGT 1 cut(s) 574
AjnI CCWGG 2 cut(s) 393, 724
AluBI AGCT 6 cut(s) 157, 263, 477, 675, 929, 956
AluI AGCT 6 cut(s) 157, 263, 477, 675, 929, 956
Alw26I GTCTC 2 cut(s) 275, 332
AlwI GGATC 2 cut(s) 203, 658
AlwNI CAGNNNCTG 4 cut(s) 263, 266, 394, 538
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 5 cut(s) 286, 587, 627, 685, 964
ApeKI GCWGC 4 cut(s) 260, 263, 672, 929
ApoI RAATTY 2 cut(s) 172, 331
AspLEI GCGC 2 cut(s) 142, 761
AspS9I GGNCC 3 cut(s) 587, 628, 965
AsuC2I CCSGG 1 cut(s) 636
AsuHPI GGTGA 2 cut(s) 694, 779
AvaI CYCGRG 1 cut(s) 166
BanI GGYRCC 1 cut(s) 728
BanII GRGCYC 1 cut(s) 154
BbsI GAAGAC 2 cut(s) 176, 851
BbvI GCAGC 4 cut(s) 250, 272, 684, 916
BccI CCATC 7 cut(s) 10, 361, 516, 729, 740, 995, 997
BceAI ACGGC 2 cut(s) 395, 760
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 2 cut(s) 395, 726
BcnI CCSGG 1 cut(s) 636
BcoDI GTCTC 2 cut(s) 275, 332
BcuI ACTAGT 1 cut(s) 574
BfaI CTAG 1 cut(s) 575
BfoI RGCGCY 1 cut(s) 762
BisI GCNGC 7 cut(s) 132, 135, 138, 261, 264, 673, 930
BlsI GCNGC 7 cut(s) 133, 136, 139, 262, 265, 674, 931
Bme1390I CCNGG 3 cut(s) 395, 636, 726
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 587, 628, 965
BmiI GGNNCC 2 cut(s) 730, 839
BmrFI CCNGG 3 cut(s) 395, 636, 726
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 2 cut(s) 626, 898
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 2 cut(s) 176, 851
BpmI CTGGAG 1 cut(s) 180
Bpu10I CCTNAGC 2 cut(s) 236, 314
BpuMI CCSGG 1 cut(s) 636
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 667, 841
BsaXI ACNNNNNCTCC 2 cut(s) 472, 502
Bsc4I CCNNNNNNNGG 3 cut(s) 318, 394, 1003
Bse118I RCCGGY 2 cut(s) 107, 318
Bse1I ACTGG 1 cut(s) 388
Bse3DI GCAATG 3 cut(s) 84, 436, 754
BseBI CCWGG 2 cut(s) 395, 726
BseDI CCNNGG 2 cut(s) 667, 841
BseGI GGATG 3 cut(s) 160, 721, 913
BseLI CCNNNNNNNGG 3 cut(s) 318, 394, 1003
BseMI GCAATG 3 cut(s) 84, 436, 754
BseMII CTCAG 2 cut(s) 250, 703
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 480
BseXI GCAGC 4 cut(s) 250, 272, 684, 916
BseYI CCCAGC 3 cut(s) 153, 178, 630
BsgI GTGCAG 1 cut(s) 771
BshFI GGCC 5 cut(s) 288, 589, 629, 687, 966
BshNI GGYRCC 1 cut(s) 728
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 3 cut(s) 108, 319, 636
BslI CCNNNNNNNGG 3 cut(s) 318, 394, 1003
BsmAI GTCTC 2 cut(s) 275, 332
BsmI GAATGC 2 cut(s) 237, 600
BsnI GGCC 5 cut(s) 288, 589, 629, 687, 966
Bso31I GGTCTC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 5 cut(s) 81, 208, 301, 663, 692
BspACI CCGC 4 cut(s) 131, 134, 137, 968
BspANI GGCC 5 cut(s) 288, 589, 629, 687, 966
BspCNI CTCAG 2 cut(s) 249, 702
BspLI GGNNCC 2 cut(s) 730, 839
BspPI GGATC 2 cut(s) 203, 658
BspT107I GGYRCC 1 cut(s) 728
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 3 cut(s) 84, 436, 754
BsrFI RCCGGY 2 cut(s) 107, 318
BsrI ACTGG 1 cut(s) 388
BssAI RCCGGY 2 cut(s) 107, 318
BssECI CCNNGG 2 cut(s) 667, 841
BssMI GATC 5 cut(s) 81, 208, 301, 663, 692
BssNAI GTATAC 1 cut(s) 309
BssT1I CCWWGG 2 cut(s) 667, 841
Bst1107I GTATAC 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 395, 726
Bst4CI ACNGT 1 cut(s) 551
BstAPI GCANNNNNTGC 1 cut(s) 944
BstC8I GCNNGC 7 cut(s) 109, 268, 290, 320, 820, 954, 968
BstDEI CTNAG 4 cut(s) 236, 314, 399, 689
BstF5I GGATG 3 cut(s) 160, 721, 913
BstH2I RGCGCY 1 cut(s) 762
BstHHI GCGC 2 cut(s) 142, 761
BstKTI GATC 5 cut(s) 84, 211, 304, 666, 695
BstMAI GTCTC 2 cut(s) 275, 332
BstMBI GATC 5 cut(s) 81, 208, 301, 663, 692
BstMWI GCNNNNNNNGC 6 cut(s) 137, 260, 758, 935, 944, 953
BstNI CCWGG 2 cut(s) 395, 726
BstSCI CCNGG 3 cut(s) 393, 634, 724
BstV1I GCAGC 4 cut(s) 250, 272, 684, 916
BstV2I GAAGAC 2 cut(s) 176, 851
BstX2I RGATCY 2 cut(s) 208, 663
BstXI CCANNNNNNTGG 1 cut(s) 296
BstYI RGATCY 2 cut(s) 208, 663
BstZ17I GTATAC 1 cut(s) 309
BsuRI GGCC 5 cut(s) 288, 589, 629, 687, 966
BtsCI GGATG 3 cut(s) 160, 721, 913
BtsIMutI CAGTG 1 cut(s) 808
Cac8I GCNNGC 7 cut(s) 109, 268, 290, 320, 820, 954, 968
CaiI CAGNNNCTG 4 cut(s) 263, 266, 394, 538
CfoI GCGC 2 cut(s) 142, 761
Cfr10I RCCGGY 2 cut(s) 107, 318
Cfr13I GGNCC 3 cut(s) 587, 628, 965
Csp6I GTAC 3 cut(s) 391, 572, 742
CviAII CATG 3 cut(s) 112, 454, 876
CviQI GTAC 3 cut(s) 391, 572, 742
DdeI CTNAG 4 cut(s) 236, 314, 399, 689
DpnI GATC 5 cut(s) 83, 210, 303, 665, 694
DpnII GATC 5 cut(s) 81, 208, 301, 663, 692
Eco130I CCWWGG 2 cut(s) 667, 841
Eco147I AGGCCT 1 cut(s) 687
Eco24I GRGCYC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 240, 945
Eco88I CYCGRG 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 393, 724
EcoT14I CCWWGG 2 cut(s) 667, 841
EcoT38I GRGCYC 1 cut(s) 154
ErhI CCWWGG 2 cut(s) 667, 841
FaeI CATG 3 cut(s) 115, 457, 879
FatI CATG 3 cut(s) 111, 453, 875
FauI CCCGC 1 cut(s) 975
FblI GTMKAC 1 cut(s) 308
Fnu4HI GCNGC 7 cut(s) 132, 135, 138, 261, 264, 673, 930
FokI GGATG 3 cut(s) 147, 708, 920
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 7 cut(s) 132, 135, 138, 261, 264, 673, 930
FspBI CTAG 1 cut(s) 575
GlaI GCGC 2 cut(s) 141, 760
GluI GCNGC 7 cut(s) 132, 135, 138, 261, 264, 673, 930
GsaI CCCAGC 3 cut(s) 157, 182, 634
GsuI CTGGAG 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 762
HaeIII GGCC 5 cut(s) 288, 589, 629, 687, 966
HapII CCGG 3 cut(s) 108, 319, 636
HhaI GCGC 2 cut(s) 142, 761
Hin1II CATG 3 cut(s) 115, 457, 879
Hin6I GCGC 2 cut(s) 140, 759
HinP1I GCGC 2 cut(s) 140, 759
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HinfI GANTC 4 cut(s) 125, 243, 349, 535
HpaII CCGG 3 cut(s) 108, 319, 636
HphI GGTGA 2 cut(s) 694, 779
Hpy166II GTNNAC 3 cut(s) 309, 649, 742
Hpy188I TCNGA 5 cut(s) 65, 663, 692, 777, 976
Hpy188III TCNNGA 2 cut(s) 168, 337
Hpy8I GTNNAC 3 cut(s) 309, 649, 742
HpyAV CCTTC 2 cut(s) 468, 633
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4V TGCA 7 cut(s) 77, 206, 547, 600, 788, 869, 932
HpyF10VI GCNNNNNNNGC 6 cut(s) 137, 260, 758, 935, 944, 953
HpyF3I CTNAG 4 cut(s) 236, 314, 399, 689
Hsp92II CATG 3 cut(s) 115, 457, 879
HspAI GCGC 2 cut(s) 140, 759
KroI GCCGGC 2 cut(s) 107, 318
KroNI GCCGGC 2 cut(s) 109, 320
Kzo9I GATC 5 cut(s) 81, 208, 301, 663, 692
LmnI GCTCC 2 cut(s) 199, 426
Lsp1109I GCAGC 4 cut(s) 250, 272, 684, 916
LweI GCATC 2 cut(s) 626, 898
MaeI CTAG 1 cut(s) 575
MaeIII GTNAC 3 cut(s) 700, 767, 980
MalI GATC 5 cut(s) 83, 210, 303, 665, 694
MboI GATC 5 cut(s) 81, 208, 301, 663, 692
MboII GAAGA 3 cut(s) 25, 176, 851
MflI RGATCY 2 cut(s) 208, 663
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 7 cut(s) 52, 87, 172, 247, 331, 582, 828
MlyI GAGTC 2 cut(s) 134, 252
MnlI CCTC 8 cut(s) 175, 461, 473, 501, 555, 698, 828, 982
MroNI GCCGGC 2 cut(s) 107, 318
MseI TTAA 5 cut(s) 86, 356, 516, 711, 960
MslI CAYNNNNRTG 2 cut(s) 726, 737
MspA1I CMGCKG 2 cut(s) 131, 263
MspI CCGG 3 cut(s) 108, 319, 636
MspR9I CCNGG 3 cut(s) 395, 636, 726
Mva1269I GAATGC 2 cut(s) 237, 600
MvaI CCWGG 2 cut(s) 395, 726
MwoI GCNNNNNNNGC 6 cut(s) 137, 260, 758, 935, 944, 953
NaeI GCCGGC 2 cut(s) 109, 320
NciI CCSGG 1 cut(s) 636
NdeII GATC 5 cut(s) 81, 208, 301, 663, 692
NgoMIV GCCGGC 2 cut(s) 107, 318
NlaIII CATG 3 cut(s) 115, 457, 879
NlaIV GGNNCC 2 cut(s) 730, 839
NmuCI GTSAC 2 cut(s) 700, 767
PaeR7I CTCGAG 1 cut(s) 166
PceI AGGCCT 1 cut(s) 687
PctI GAATGC 2 cut(s) 237, 600
PdiI GCCGGC 2 cut(s) 109, 320
PfeI GAWTC 2 cut(s) 349, 535
PflFI GACNNNGTC 1 cut(s) 653
PflMI CCANNNNNTGG 2 cut(s) 394, 1003
PkrI GCNGC 7 cut(s) 133, 136, 139, 262, 265, 674, 931
PleI GAGTC 2 cut(s) 133, 251
PpsI GAGTC 2 cut(s) 133, 251
Psp6I CCWGG 2 cut(s) 393, 724
PspFI CCCAGC 3 cut(s) 153, 178, 630
PspGI CCWGG 2 cut(s) 393, 724
PspN4I GGNNCC 2 cut(s) 730, 839
PspPI GGNCC 3 cut(s) 587, 628, 965
PstNI CAGNNNCTG 4 cut(s) 263, 266, 394, 538
PsuI RGATCY 2 cut(s) 208, 663
PsyI GACNNNGTC 1 cut(s) 653
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 3 cut(s) 392, 573, 743
RsaNI GTAC 3 cut(s) 391, 572, 742
RseI CAYNNNNRTG 2 cut(s) 726, 737
SaqAI TTAA 5 cut(s) 86, 356, 516, 711, 960
SatI GCNGC 7 cut(s) 132, 135, 138, 261, 264, 673, 930
Sau3AI GATC 5 cut(s) 81, 208, 301, 663, 692
Sau96I GGNCC 3 cut(s) 587, 628, 965
SchI GAGTC 2 cut(s) 134, 252
ScrFI CCNGG 3 cut(s) 395, 636, 726
SduI GDGCHC 1 cut(s) 154
SfaNI GCATC 2 cut(s) 626, 898
Sfr274I CTCGAG 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 166
SmiMI CAYNNNNRTG 2 cut(s) 726, 737
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SpeI ACTAGT 1 cut(s) 574
Sse9I AATT 7 cut(s) 52, 87, 172, 247, 331, 582, 828
SseBI AGGCCT 1 cut(s) 687
SsiI CCGC 4 cut(s) 131, 134, 137, 968
SspMI CTAG 1 cut(s) 575
StuI AGGCCT 1 cut(s) 687
StyD4I CCNGG 3 cut(s) 393, 634, 724
StyI CCWWGG 2 cut(s) 667, 841
TaaI ACNGT 1 cut(s) 551
TaqI TCGA 4 cut(s) 167, 276, 336, 404
TasI AATT 7 cut(s) 52, 87, 172, 247, 331, 582, 828
TatI WGTACW 1 cut(s) 571
TauI GCSGC 3 cut(s) 134, 137, 140
TfiI GAWTC 2 cut(s) 349, 535
Tru1I TTAA 5 cut(s) 86, 356, 516, 711, 960
Tru9I TTAA 5 cut(s) 86, 356, 516, 711, 960
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 2 cut(s) 700, 767
TseI GCWGC 4 cut(s) 260, 263, 672, 929
Tsp45I GTSAC 2 cut(s) 700, 767
TspRI CASTG 1 cut(s) 808
Tth111I GACNNNGTC 1 cut(s) 653
Van91I CCANNNNNTGG 2 cut(s) 394, 1003
XapI RAATTY 2 cut(s) 172, 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XhoI CTCGAG 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 308
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.