Rh6AG002300

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016165
Physical Location & Seq
Reverse (-)
468479 .. 470505
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG002300.1

Sequence Viewer

Length: 972 bp
ATGCATGCATGCATGGGTGGTAAGAAGATGGTAGCGATTTGTAATGACCGGCTGTGGTTAGCCAATTATACTATCGGAATGGTGTTTACAATGATCTTAATTAATAGTAGTAGTATGGTGGCCGGCATGGGATTTGGGGAGTCAGCCGCGGCGGCGGCGGCGGCGGCGCAGGTTCCGGCAATGTTTGCGTTTGGGGACTCACTCATTGATGCTGGCAACAACAACTTCATAAGCTCCATCGCAAAATCCAATTATTATCCTTACGGCATCGATTTCAGGGGAGGCCCCTCCGGCAGATTCACCAATGGAAGAACTTTCGTTGATATGCTTGGAAATTTGCTGGGTCTTCCTTATGCTCCAGCCTTTGCAGATCCTAATACAAAAGGAAACAGAATGCTCAGGGGAGTCAATTATGCTTCAGCAGCTGCTGGCATACTCGATGAGACAGGCCGGCACTATGGAGATCGGTATACCCTAAGCCGGCAAGTGTTGAATTTCGAGACCACCTTGAATCAGTTAAGAACGATGATGGGGGGAACTAACCTGACCCAGTACCTGGCTAAGTCGATTGCCGTTTTGGTATTTGGGAGCAATGACTACCTCAACAACTACCTCATGCCTTCCTTCTATTCTTCCAGCTACACTTACACTCCTCCTGCCTTTGCCAACCTTCTCCTTAATCGCTATGCCACACAGATTCTGGCTTTGCACGGTCTTGGATTGAGGAAGTTTGTGCTAGTAGGAATTGGGCCTTTGGGTTGCATTCCTAACCAAAGAGCATCAGGTAAGGCCCAGCCTGGAAGGTGTGTTGACAATGTCAATCAGATCCTTGGCAGCTTCAATCAAGGGCTCAGATCGCTCGTCACCCAACTTAACAACAACCATCCTGGTGCCATCTTTGTGTACGGCAATGCTTATGGCGCTTTTGGTGACATTCTGAATAACCCTGCACCCTATGGTAAGTATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

323

Amino Acids

34.75

Weight (kDa)

9.37

Isoelectric Point (pI)

28.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 62 - 308 2.5e-23 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71250
fragaria_vesca FvH4_2g00180
malus_domestica MD10G1000500.v1.1
prunus_persica Prupe.8G001600_v2.0.a1 Prupe.8G001600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249471
rosa_laevigata RLG00000015578
rosa_multiflora Rmu_ssc0000459.1_g000021
rosa_roxburghii Rroxscaffold_7G00217670
rosa_rugosa Rorug05G0492600
rosa_samantha Rh6AG002300 Rh6BG007800 Rh6CG001500 Rh6DG001500
rosa_wichuraiana Rw6G000290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccB1I GGYRCC 1 cut(s) 890
AccB7I CCANNNNNTGG 1 cut(s) 556
AccI GTMKAC 2 cut(s) 470, 965
AccII CGCG 1 cut(s) 149
AciI CCGC 7 cut(s) 147, 149, 152, 155, 158, 161, 164
AclWI GGATC 2 cut(s) 365, 820
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 2 cut(s) 334, 493
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 2 cut(s) 554, 905
AfiI CCNNNNNNNGG 2 cut(s) 480, 556
AgsI TTSAA 3 cut(s) 493, 511, 841
AjnI CCWGG 3 cut(s) 555, 796, 886
AluBI AGCT 4 cut(s) 234, 425, 639, 837
AluI AGCT 4 cut(s) 234, 425, 639, 837
Alw26I GTCTC 2 cut(s) 437, 494
AlwI GGATC 2 cut(s) 365, 820
AlwNI CAGNNNCTG 4 cut(s) 425, 428, 556, 700
AoxI GGCC 5 cut(s) 120, 283, 448, 749, 789
ApeKI GCWGC 3 cut(s) 422, 425, 834
ApoI RAATTY 2 cut(s) 334, 493
AseI ATTAAT 1 cut(s) 102
AspLEI GCGC 2 cut(s) 169, 923
AspS9I GGNCC 3 cut(s) 284, 749, 790
AsuHPI GGTGA 3 cut(s) 292, 856, 941
BanI GGYRCC 1 cut(s) 890
BanII GRGCYC 1 cut(s) 852
BbsI GAAGAC 1 cut(s) 338
BbvI GCAGC 3 cut(s) 412, 434, 846
BccI CCATC 5 cut(s) 22, 245, 523, 891, 902
BceAI ACGGC 3 cut(s) 280, 557, 922
BciT130I CCWGG 3 cut(s) 557, 798, 888
BcoDI GTCTC 2 cut(s) 437, 494
BfaI CTAG 1 cut(s) 737
BfoI RGCGCY 1 cut(s) 924
BfuAI ACCTGC 1 cut(s) 160
BglI GCCNNNNNGGC 2 cut(s) 152, 291
Bme1390I CCNGG 3 cut(s) 557, 798, 888
BmgT120I GGNCC 3 cut(s) 284, 749, 790
BmiI GGNNCC 3 cut(s) 174, 286, 892
BmrFI CCNGG 3 cut(s) 557, 798, 888
BmrI ACTGGG 1 cut(s) 544
BmsI GCATC 3 cut(s) 199, 276, 788
BmuI ACTGGG 1 cut(s) 544
BpiI GAAGAC 1 cut(s) 338
BpmI CTGGAG 1 cut(s) 342
Bpu10I CCTNAGC 2 cut(s) 398, 476
Bsa29I ATCGAT 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 147, 829
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 2 cut(s) 480, 556
Bse118I RCCGGY 4 cut(s) 48, 122, 450, 480
Bse1I ACTGG 1 cut(s) 550
Bse3DI GCAATG 3 cut(s) 186, 598, 916
BseBI CCWGG 3 cut(s) 557, 798, 888
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 2 cut(s) 147, 829
BseGI GGATG 1 cut(s) 883
BseLI CCNNNNNNNGG 2 cut(s) 480, 556
BseMI GCAATG 3 cut(s) 186, 598, 916
BseMII CTCAG 2 cut(s) 412, 865
BseNI ACTGG 1 cut(s) 550
BseRI GAGGAG 1 cut(s) 642
BseXI GCAGC 3 cut(s) 412, 434, 846
BseYI CCCAGC 2 cut(s) 340, 792
BsgI GTGCAG 1 cut(s) 933
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 5 cut(s) 122, 285, 450, 751, 791
BshNI GGYRCC 1 cut(s) 890
BshVI ATCGAT 1 cut(s) 270
BsiSI CCGG 6 cut(s) 49, 123, 176, 291, 451, 481
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 480, 556
BsmAI GTCTC 2 cut(s) 437, 494
BsmFI GGGAC 1 cut(s) 209
BsmI GAATGC 2 cut(s) 399, 762
BsnI GGCC 5 cut(s) 122, 285, 450, 751, 791
Bso31I GGTCTC 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 852
Bsp143I GATC 5 cut(s) 93, 370, 463, 825, 854
BspACI CCGC 7 cut(s) 147, 149, 152, 155, 158, 161, 164
BspANI GGCC 5 cut(s) 122, 285, 450, 751, 791
BspCNI CTCAG 2 cut(s) 411, 864
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 3 cut(s) 174, 286, 892
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 2 cut(s) 365, 820
BspT107I GGYRCC 1 cut(s) 890
BspTNI GGTCTC 1 cut(s) 494
BsrDI GCAATG 3 cut(s) 186, 598, 916
BsrFI RCCGGY 4 cut(s) 48, 122, 450, 480
BsrI ACTGG 1 cut(s) 550
BssAI RCCGGY 4 cut(s) 48, 122, 450, 480
BssECI CCNNGG 2 cut(s) 147, 829
BssMI GATC 5 cut(s) 93, 370, 463, 825, 854
BssNAI GTATAC 2 cut(s) 471, 966
BssT1I CCWWGG 1 cut(s) 829
Bst1107I GTATAC 2 cut(s) 471, 966
Bst2UI CCWGG 3 cut(s) 557, 798, 888
Bst4CI ACNGT 1 cut(s) 713
BstAPI GCANNNNNTGC 1 cut(s) 185
BstC8I GCNNGC 7 cut(s) 6, 10, 124, 214, 430, 452, 482
BstDEI CTNAG 4 cut(s) 398, 476, 561, 851
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 883
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 924
BstHHI GCGC 2 cut(s) 169, 923
BstKTI GATC 5 cut(s) 96, 373, 466, 828, 857
BstMAI GTCTC 2 cut(s) 437, 494
BstMBI GATC 5 cut(s) 93, 370, 463, 825, 854
BstNI CCWGG 3 cut(s) 557, 798, 888
BstNSI RCATGY 2 cut(s) 8, 12
BstSCI CCNGG 3 cut(s) 555, 796, 886
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 3 cut(s) 412, 434, 846
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 2 cut(s) 370, 825
BstYI RGATCY 2 cut(s) 370, 825
BstZ17I GTATAC 2 cut(s) 471, 966
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 5 cut(s) 122, 285, 450, 751, 791
BsuTUI ATCGAT 1 cut(s) 270
BtgI CCRYGG 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 223
BtsCI GGATG 1 cut(s) 883
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 7 cut(s) 6, 10, 124, 214, 430, 452, 482
CaiI CAGNNNCTG 4 cut(s) 425, 428, 556, 700
CfoI GCGC 2 cut(s) 169, 923
Cfr10I RCCGGY 4 cut(s) 48, 122, 450, 480
Cfr13I GGNCC 3 cut(s) 284, 749, 790
Cfr42I CCGCGG 1 cut(s) 150
ClaI ATCGAT 1 cut(s) 270
Csp6I GTAC 2 cut(s) 553, 904
CviAII CATG 5 cut(s) 5, 9, 13, 127, 616
CviQI GTAC 2 cut(s) 553, 904
DdeI CTNAG 4 cut(s) 398, 476, 561, 851
DpnI GATC 5 cut(s) 95, 372, 465, 827, 856
DpnII GATC 5 cut(s) 93, 370, 463, 825, 854
EaeI YGGCCR 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 829
Eco24I GRGCYC 1 cut(s) 852
Eco31I GGTCTC 1 cut(s) 494
Eco57I CTGAAG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 284
EcoRII CCWGG 3 cut(s) 555, 796, 886
EcoT14I CCWWGG 1 cut(s) 829
EcoT22I ATGCAT 3 cut(s) 6, 10, 14
EcoT38I GRGCYC 1 cut(s) 852
ErhI CCWWGG 1 cut(s) 829
FaeI CATG 5 cut(s) 8, 12, 16, 130, 619
FaqI GGGAC 1 cut(s) 209
FatI CATG 5 cut(s) 4, 8, 12, 126, 615
FblI GTMKAC 2 cut(s) 470, 965
FokI GGATG 1 cut(s) 870
FriOI GRGCYC 1 cut(s) 852
FspBI CTAG 1 cut(s) 737
GlaI GCGC 2 cut(s) 168, 922
GsaI CCCAGC 2 cut(s) 344, 796
GsuI CTGGAG 1 cut(s) 342
HaeII RGCGCY 1 cut(s) 924
HaeIII GGCC 5 cut(s) 122, 285, 450, 751, 791
HapII CCGG 6 cut(s) 49, 123, 176, 291, 451, 481
HhaI GCGC 2 cut(s) 169, 923
Hin1II CATG 5 cut(s) 8, 12, 16, 130, 619
Hin6I GCGC 2 cut(s) 167, 921
HinP1I GCGC 2 cut(s) 167, 921
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HinfI GANTC 6 cut(s) 140, 197, 297, 405, 511, 697
HpaII CCGG 6 cut(s) 49, 123, 176, 291, 451, 481
HphI GGTGA 3 cut(s) 292, 856, 941
Hpy166II GTNNAC 5 cut(s) 87, 471, 811, 904, 966
Hpy188I TCNGA 4 cut(s) 77, 825, 854, 939
Hpy188III TCNNGA 1 cut(s) 499
Hpy8I GTNNAC 5 cut(s) 87, 471, 811, 904, 966
HpyAV CCTTC 4 cut(s) 630, 634, 680, 795
HpyCH4III ACNGT 1 cut(s) 713
HpyCH4V TGCA 7 cut(s) 4, 8, 12, 368, 709, 762, 950
HpyF3I CTNAG 4 cut(s) 398, 476, 561, 851
Hsp92II CATG 5 cut(s) 8, 12, 16, 130, 619
HspAI GCGC 2 cut(s) 167, 921
KroI GCCGGC 3 cut(s) 122, 450, 480
KroNI GCCGGC 3 cut(s) 124, 452, 482
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 5 cut(s) 93, 370, 463, 825, 854
LmnI GCTCC 3 cut(s) 239, 361, 588
Lsp1109I GCAGC 3 cut(s) 412, 434, 846
LweI GCATC 3 cut(s) 199, 276, 788
MaeI CTAG 1 cut(s) 737
MaeIII GTNAC 2 cut(s) 862, 929
MalI GATC 5 cut(s) 95, 372, 465, 827, 856
MboI GATC 5 cut(s) 93, 370, 463, 825, 854
MboII GAAGA 4 cut(s) 37, 321, 338, 624
MflI RGATCY 2 cut(s) 370, 825
MhlI GDGCHC 1 cut(s) 852
MluCI AATT 7 cut(s) 64, 99, 250, 334, 409, 493, 744
MlyI GAGTC 3 cut(s) 149, 191, 414
MnlI CCTC 6 cut(s) 275, 298, 611, 623, 663, 717
Mph1103I ATGCAT 3 cut(s) 6, 10, 14
MroNI GCCGGC 3 cut(s) 122, 450, 480
MseI TTAA 5 cut(s) 98, 102, 518, 678, 873
MslI CAYNNNNRTG 2 cut(s) 888, 899
MspA1I CMGCKG 2 cut(s) 149, 425
MspI CCGG 6 cut(s) 49, 123, 176, 291, 451, 481
MspR9I CCNGG 3 cut(s) 557, 798, 888
Mva1269I GAATGC 2 cut(s) 399, 762
MvaI CCWGG 3 cut(s) 557, 798, 888
MvnI CGCG 1 cut(s) 149
NaeI GCCGGC 3 cut(s) 124, 452, 482
NdeII GATC 5 cut(s) 93, 370, 463, 825, 854
NgoMIV GCCGGC 3 cut(s) 122, 450, 480
NlaIII CATG 5 cut(s) 8, 12, 16, 130, 619
NlaIV GGNNCC 3 cut(s) 174, 286, 892
NmuCI GTSAC 2 cut(s) 862, 929
NsiI ATGCAT 3 cut(s) 6, 10, 14
NspI RCATGY 2 cut(s) 8, 12
PacI TTAATTAA 1 cut(s) 102
PaeI GCATGC 2 cut(s) 8, 12
PctI GAATGC 2 cut(s) 399, 762
PdiI GCCGGC 3 cut(s) 124, 452, 482
PfeI GAWTC 3 cut(s) 297, 511, 697
PflFI GACNNNGTC 1 cut(s) 815
PflMI CCANNNNNTGG 1 cut(s) 556
PleI GAGTC 3 cut(s) 148, 191, 413
PpsI GAGTC 3 cut(s) 148, 191, 413
PshBI ATTAAT 1 cut(s) 102
Psp6I CCWGG 3 cut(s) 555, 796, 886
PspFI CCCAGC 2 cut(s) 340, 792
PspGI CCWGG 3 cut(s) 555, 796, 886
PspN4I GGNNCC 3 cut(s) 174, 286, 892
PspPI GGNCC 3 cut(s) 284, 749, 790
PstNI CAGNNNCTG 4 cut(s) 425, 428, 556, 700
PsuI RGATCY 2 cut(s) 370, 825
PsyI GACNNNGTC 1 cut(s) 815
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 554, 905
RsaNI GTAC 2 cut(s) 553, 904
RseI CAYNNNNRTG 2 cut(s) 888, 899
SacII CCGCGG 1 cut(s) 150
SaqAI TTAA 5 cut(s) 98, 102, 518, 678, 873
Sau3AI GATC 5 cut(s) 93, 370, 463, 825, 854
Sau96I GGNCC 3 cut(s) 284, 749, 790
SchI GAGTC 3 cut(s) 149, 191, 414
ScrFI CCNGG 3 cut(s) 557, 798, 888
SduI GDGCHC 1 cut(s) 852
SfaNI GCATC 3 cut(s) 199, 276, 788
Sfr303I CCGCGG 1 cut(s) 150
SgrBI CCGCGG 1 cut(s) 150
SmiMI CAYNNNNRTG 2 cut(s) 888, 899
SphI GCATGC 2 cut(s) 8, 12
Sse9I AATT 7 cut(s) 64, 99, 250, 334, 409, 493, 744
SsiI CCGC 7 cut(s) 147, 149, 152, 155, 158, 161, 164
SspMI CTAG 1 cut(s) 737
StyD4I CCNGG 3 cut(s) 555, 796, 886
StyI CCWWGG 1 cut(s) 829
TaaI ACNGT 1 cut(s) 713
TaqI TCGA 4 cut(s) 270, 438, 498, 566
TasI AATT 7 cut(s) 64, 99, 250, 334, 409, 493, 744
TauI GCSGC 7 cut(s) 149, 152, 155, 158, 161, 164, 167
TfiI GAWTC 3 cut(s) 297, 511, 697
Tru1I TTAA 5 cut(s) 98, 102, 518, 678, 873
Tru9I TTAA 5 cut(s) 98, 102, 518, 678, 873
TseFI GTSAC 2 cut(s) 862, 929
TseI GCWGC 3 cut(s) 422, 425, 834
Tsp45I GTSAC 2 cut(s) 862, 929
TspDTI ATGAA 1 cut(s) 217
Tth111I GACNNNGTC 1 cut(s) 815
Van91I CCANNNNNTGG 1 cut(s) 556
VspI ATTAAT 1 cut(s) 102
XapI RAATTY 2 cut(s) 334, 493
XceI RCATGY 2 cut(s) 8, 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
XmiI GTMKAC 2 cut(s) 470, 965
XspI CTAG 1 cut(s) 737
Zsp2I ATGCAT 3 cut(s) 6, 10, 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.