Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014857

Physical Location & Seq

Genomic Coordinates Reverse (-)

10951058 .. 10953821

Gene Structure 2764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22924

Sequence Viewer

CDS Protein Promoter (2k)

Length: 123 bp

ATGCAGTTGTACTTGGTTCTGGACACACCTGCAAATGGCATAAAGCAATATTGTCAAGTAGATTTTGCAAAGCAACGTAGTGATATTGGTAACAGCGAGCTATCAAATTTGCAAGTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005034 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009791 GO:0009927 GO:0009987 GO:0010035 GO:0010154 GO:0010375 GO:0010431 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071695 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

40

Amino Acids

4.55

Weight (kDa)

4.68

Isoelectric Point (pI)

21.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014857)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0255591 RchiOBHm_Chr7g0201351
rosa_laevigata	RLG00000034031
rosa_multiflora	Rmu_sc0007618.1_g000021 Rmu_sc0011008.1_g000002
rosa_roxburghii	Rroxscaffold_1G00039500 Rroxscaffold_4G00299840 Rroxscaffold_6G00398260
rosa_samantha	Rh2CG513300 Rh5CG201100 Rh5CG313100 Rh6BG226600 Rh6CG229200 Rh6DG220300 Rh7BG289100 Rh7BG444400
rosa_wichuraiana	Rw4G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
Acc36I	ACCTGC	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	106
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	35
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	98
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	10
CviJI	RGCY	1 cut(s)	100
CviKI_1	RGCY	1 cut(s)	100
CviQI	GTAC	1 cut(s)	10
FaiI	YATR	1 cut(s)	41
FspEI	CC	4 cut(s)	5, 21, 42, 72
Hpy188III	TCNNGA	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	4 cut(s)	4, 32, 68, 112
HpySE526I	ACGT	1 cut(s)	76
LpnPI	CCDG	2 cut(s)	5, 42
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	89
MluCI	AATT	1 cut(s)	106
PaqCI	CACCTGC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SetI	ASST	3 cut(s)	31, 79, 102
SgeI	CNNG	5 cut(s)	25, 32, 41, 68, 109
Sse9I	AATT	1 cut(s)	106
SspI	AATATT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	79
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	9
XapI	RAATTY	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.