Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014857

Physical Location & Seq

Genomic Coordinates Reverse (-)

35556727 .. 35559462

Gene Structure 2736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034031

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTCAATGATTTCTATCAATCTCTATTGCTCCACTGTGGTAGATGAAGTAAATACAGGTTATCAAGATGTGTGGAGAAATCAGGGTTGTAAAGAAGGATGGCCAGGAACTTCAATGCAATTGTACTTGGTTCTGGATACACCTGCAGATGGCACTAAACAATATTGTCAAGAAGATTTTGCAAAGCAGGGTAGTGTGGTGACTGATGATCCTTTTCTCTTAGGTAAAATGCTTGGAAACTGTGCTGATGAACAACGAGGGGTGGAGTCTCTTCTGGATTACTCTGTTTCTCGTGGAGATGGTGATCGGATTGGGGTAGAGCTTCAATTTCTTGATCACACGGCGAGTGATGGTGCACAAGTCGGTGGCTGTGGTGACGGTGACATGACCTACTGCGGCGGCCGGACCCTAACGGTGGTAGAGGACGGAGGGAGCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005034 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009791 GO:0009927 GO:0009987 GO:0010035 GO:0010154 GO:0010375 GO:0010431 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071695 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

147

Amino Acids

15.7

Weight (kDa)

4.07

Isoelectric Point (pI)

21.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014857)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0255591 RchiOBHm_Chr7g0201351
rosa_laevigata	RLG00000034031
rosa_multiflora	Rmu_sc0007618.1_g000021 Rmu_sc0011008.1_g000002
rosa_roxburghii	Rroxscaffold_1G00039500 Rroxscaffold_4G00299840 Rroxscaffold_6G00398260
rosa_samantha	Rh2CG513300 Rh5CG201100 Rh5CG313100 Rh6BG226600 Rh6CG229200 Rh6DG220300 Rh7BG289100 Rh7BG444400
rosa_wichuraiana	Rw4G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	151
Acc36I	ACCTGC	1 cut(s)	151
AciI	CCGC	2 cut(s)	396, 399
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	2 cut(s)	101, 400
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	149, 415
AgsI	TTSAA	2 cut(s)	114, 326
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	1 cut(s)	322
AluI	AGCT	1 cut(s)	322
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	273
Alw44I	GTGCAC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	2 cut(s)	101, 400
ApaLI	GTGCAC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	405
AsuHPI	GGTGA	4 cut(s)	211, 314, 386, 392
AvaII	GGWCC	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	103
BauI	CACGAG	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	358
BccI	CCATC	4 cut(s)	93, 143, 293, 344
BceAI	ACGGC	1 cut(s)	357
BciT130I	CCWGG	1 cut(s)	105
BciVI	GTATCC	1 cut(s)	130
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	439
BfmI	CTRYAG	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	151
BfuI	GTATCC	1 cut(s)	130
BisI	GCNGC	2 cut(s)	397, 400
BlsI	GCNGC	2 cut(s)	398, 401
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	1 cut(s)	105
BsaBI	GATNNNNATC	2 cut(s)	14, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 415
Bse8I	GATNNNNATC	2 cut(s)	14, 303
BseBI	CCWGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	104
BseJI	GATNNNNATC	2 cut(s)	14, 303
BseLI	CCNNNNNNNGG	2 cut(s)	149, 415
BseSI	GKGCMC	1 cut(s)	358
BseX3I	CGGCCG	1 cut(s)	400
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	2 cut(s)	103, 402
BsiEI	CGRYCG	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	403
BslI	CCNNNNNNNGG	2 cut(s)	149, 415
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	103, 402
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	208, 304, 334
BspACI	CCGC	2 cut(s)	396, 399
BspANI	GGCC	2 cut(s)	103, 402
BspLI	GGNNCC	1 cut(s)	407
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	203
BssMI	GATC	3 cut(s)	208, 304, 334
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	4 cut(s)	37, 242, 380, 415
Bst6I	CTCTTC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	104
BstKTI	GATC	3 cut(s)	211, 307, 337
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	3 cut(s)	208, 304, 334
BstMCI	CGRYCG	1 cut(s)	403
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	358
BstZI	CGGCCG	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	103, 402
BtsCI	GGATG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	124
CspCI	CAANNNNNGTGG	2 cut(s)	53, 88
CviAII	CATG	1 cut(s)	385
CviJI	RGCY	4 cut(s)	103, 322, 369, 402
CviKI_1	RGCY	4 cut(s)	103, 322, 369, 402
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	220
DpnI	GATC	3 cut(s)	210, 306, 336
DpnII	GATC	3 cut(s)	208, 304, 334
EaeI	YGGCCR	2 cut(s)	101, 400
EagI	CGGCCG	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EclXI	CGGCCG	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	405
Eco52I	CGGCCG	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	103
FaeI	CATG	1 cut(s)	388
FaiI	YATR	1 cut(s)	386
FatI	CATG	1 cut(s)	384
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	397, 400
FokI	GGATG	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	397, 400
FspBI	CTAG	1 cut(s)	439
GluI	GCNGC	2 cut(s)	397, 400
HaeIII	GGCC	2 cut(s)	103, 402
HapII	CCGG	1 cut(s)	403
Hin1II	CATG	1 cut(s)	388
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	4 cut(s)	211, 314, 386, 392
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	5 cut(s)	65, 134, 170, 275, 332
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	4 cut(s)	37, 242, 380, 415
HpyCH4V	TGCA	4 cut(s)	118, 146, 182, 356
HpyF3I	CTNAG	1 cut(s)	220
Hsp92II	CATG	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	208, 304, 334
LmnI	GCTCC	2 cut(s)	35, 432
LpnPI	CCDG	9 cut(s)	42, 68, 90, 117, 119, 156, 173, 260, 416
MaeI	CTAG	1 cut(s)	439
MaeIII	GTNAC	3 cut(s)	199, 374, 380
MalI	GATC	3 cut(s)	210, 306, 336
MboI	GATC	3 cut(s)	208, 304, 334
MboII	GAAGA	2 cut(s)	185, 263
MfeI	CAATTG	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	358
MlsI	TGGCCA	1 cut(s)	103
MluCI	AATT	2 cut(s)	119, 326
MluNI	TGGCCA	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	3 cut(s)	251, 415, 422
Mox20I	TGGCCA	1 cut(s)	103
MscI	TGGCCA	1 cut(s)	103
Msp20I	TGGCCA	1 cut(s)	103
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	1 cut(s)	105
MunI	CAATTG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	105
NdeII	GATC	3 cut(s)	208, 304, 334
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	1 cut(s)	407
NmuCI	GTSAC	3 cut(s)	199, 374, 380
PaqCI	CACCTGC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PkrI	GCNGC	2 cut(s)	398, 401
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	405
PstI	CTGCAG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SatI	GCNGC	2 cut(s)	397, 400
Sau3AI	GATC	3 cut(s)	208, 304, 334
Sau96I	GGNCC	1 cut(s)	405
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	5 cut(s)	61, 145, 226, 324, 392
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	405
Sse9I	AATT	2 cut(s)	119, 326
SsiI	CCGC	2 cut(s)	396, 399
SspI	AATATT	1 cut(s)	164
SspMI	CTAG	1 cut(s)	439
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	4 cut(s)	37, 242, 380, 415
TasI	AATT	2 cut(s)	119, 326
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	2 cut(s)	399, 402
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	3 cut(s)	199, 374, 380
Tsp45I	GTSAC	3 cut(s)	199, 374, 380
TspDTI	ATGAA	2 cut(s)	60, 264
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	405
XspI	CTAG	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.