Rroxscaffold_1G00039500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014857
Physical Location & Seq
Forward (+)
57157030 .. 57165465
8436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039500.1

Sequence Viewer

Length: 846 bp
ATGGTCGCACATGAGAGTGCAACGAGAAGATTATTCGTTATTTCGGTAATGGAGGGTCATATACAAACACTAATTAATAAAGGGTTGGCCAAAAGGAATGGTTGTAGTGCTGATGAACAACGAGGGGTGGAGATCGACTCTTCTAGATTGCTCGTTTCTCGTGGAGATGGTGATCGGATTGGGGTAGAGCTTCAATTTCTTGATCACACGGCGAGTGATGGTGCACAAGTCGGTGGTCGTGGTGATGGTGACATGACCTCATCGCGGTGGCCGGACCCTAACGATGAAGGAGGACGGAGGGAGCGACTAGCTTGCGAGGCTAGAGGCCTACAGCTGCCCCAGCTAGCGATCAAAGCTGCGAGCGACGAGCCTCCACAGCCGCTGCAATCAAGTCTCCAGACTTCAATCAAATACCGTTCGACCCACAACCACAAAGCATTCAAGCAATTGGCCACCGCTAACTGTGCCACGTTCTTCGAACCCAGTAACTGCCGATATGCTCTGGACATCCCACGTGTGGCTGTGTTCTTCTTCGGGCACCCAGAGTTCTTGCTTGTTCGAGCAAGCAACTCATGCTCTTCTCTGCGAAATCACGCTCTCCTTGCACGTTTCAGAGAGAGGCTTCAACCAGATAATCTATCCTCTAGTCACCATACTTTGTCAAACTTTCCCTACGGGAAAGAGACCCAAACGGGTCTAGACTCCAAGAGTCTATGGTCTATGACCAACCGCCAAGCGGTAAGGCAACGCCTCATAATGACAATGACCGTTACGCGACATTATAGTCAAGCTTTTCTCCCGAAAAGAGTAAAGGGACCGGTTAACACAGCCCACGACAGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

31.29

Weight (kDa)

9.47

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 783
AccB1I GGYRCC 1 cut(s) 537
AccII CGCG 2 cut(s) 265, 775
AciI CCGC 5 cut(s) 265, 380, 456, 730, 737
AcoI YGGCCR 3 cut(s) 87, 269, 450
AcvI CACGTG 1 cut(s) 515
AfiI CCNNNNNNNGG 3 cut(s) 264, 517, 736
AflIII ACRYGT 1 cut(s) 514
AgeI ACCGGT 1 cut(s) 817
AgsI TTSAA 4 cut(s) 194, 405, 442, 626
AluBI AGCT 6 cut(s) 190, 311, 334, 343, 356, 791
AluI AGCT 6 cut(s) 190, 311, 334, 343, 356, 791
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 2 cut(s) 398, 677
Alw44I GTGCAC 1 cut(s) 222
AlwNI CAGNNNCTG 2 cut(s) 382, 489
AoxI GGCC 4 cut(s) 87, 269, 325, 450
ApaLI GTGCAC 1 cut(s) 222
ApeKI GCWGC 3 cut(s) 334, 356, 382
AseI ATTAAT 1 cut(s) 75
AsiGI ACCGGT 1 cut(s) 817
AspS9I GGNCC 2 cut(s) 274, 815
AsuHPI GGTGA 4 cut(s) 182, 254, 260, 641
AsuII TTCGAA 1 cut(s) 477
AsuNHI GCTAGC 1 cut(s) 343
AvaII GGWCC 2 cut(s) 274, 815
BaeGI GKGCMC 2 cut(s) 226, 540
BalI TGGCCA 2 cut(s) 89, 452
BanI GGYRCC 1 cut(s) 537
BauI CACGAG 1 cut(s) 159
BbrPI CACGTG 1 cut(s) 515
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 3 cut(s) 321, 343, 369
BccI CCATC 3 cut(s) 161, 212, 239
BceAI ACGGC 1 cut(s) 225
BcgI CGANNNNNNTGC 2 cut(s) 294, 328
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 398, 677
BfaI CTAG 6 cut(s) 144, 308, 321, 344, 645, 698
BfmI CTRYAG 1 cut(s) 329
BisI GCNGC 4 cut(s) 335, 357, 380, 383
BlsI GCNGC 4 cut(s) 336, 358, 381, 384
Bme18I GGWCC 2 cut(s) 274, 815
BmgT120I GGNCC 2 cut(s) 274, 815
BmiI GGNNCC 3 cut(s) 276, 539, 816
BmrI ACTGGG 1 cut(s) 477
BmtI GCTAGC 1 cut(s) 347
BmuI ACTGGG 1 cut(s) 477
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 1 cut(s) 380
Bpu14I TTCGAA 1 cut(s) 477
BsaAI YACGTR 1 cut(s) 515
BsaBI GATNNNNATC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 677
BsaWI WCCGGW 1 cut(s) 817
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 517, 736
Bse118I RCCGGY 1 cut(s) 817
Bse1I ACTGG 1 cut(s) 483
Bse8I GATNNNNATC 1 cut(s) 171
BseGI GGATG 1 cut(s) 507
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 3 cut(s) 264, 517, 736
BseNI ACTGG 1 cut(s) 483
BseSI GKGCMC 2 cut(s) 226, 540
BseXI GCAGC 3 cut(s) 321, 343, 369
BseYI CCCAGC 1 cut(s) 339
Bsh1236I CGCG 2 cut(s) 265, 775
BshFI GGCC 4 cut(s) 89, 271, 327, 452
BshNI GGYRCC 1 cut(s) 537
BshTI ACCGGT 1 cut(s) 817
BsiHKAI GWGCWC 1 cut(s) 226
BsiSI CCGG 2 cut(s) 272, 818
BslFI GGGAC 1 cut(s) 828
BslI CCNNNNNNNGG 3 cut(s) 264, 517, 736
BsmAI GTCTC 2 cut(s) 398, 677
BsmFI GGGAC 1 cut(s) 828
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 4 cut(s) 89, 271, 327, 452
Bso31I GGTCTC 1 cut(s) 677
Bsp119I TTCGAA 1 cut(s) 477
Bsp1286I GDGCHC 2 cut(s) 226, 540
Bsp143I GATC 4 cut(s) 132, 172, 202, 348
BspACI CCGC 5 cut(s) 265, 380, 456, 730, 737
BspANI GGCC 4 cut(s) 89, 271, 327, 452
BspFNI CGCG 2 cut(s) 265, 775
BspLI GGNNCC 3 cut(s) 276, 539, 816
BspOI GCTAGC 1 cut(s) 347
BspQI GCTCTTC 1 cut(s) 583
BspT104I TTCGAA 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 537
BspTNI GGTCTC 1 cut(s) 677
BsrFI RCCGGY 1 cut(s) 817
BsrI ACTGG 1 cut(s) 483
BssAI RCCGGY 1 cut(s) 817
BssMI GATC 4 cut(s) 132, 172, 202, 348
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
Bst4CI ACNGT 3 cut(s) 416, 464, 769
Bst6I CTCTTC 2 cut(s) 145, 583
BstAPI GCANNNNNTGC 1 cut(s) 573
BstBAI YACGTR 1 cut(s) 515
BstBI TTCGAA 1 cut(s) 477
BstC8I GCNNGC 4 cut(s) 313, 345, 361, 565
BstF5I GGATG 1 cut(s) 507
BstFNI CGCG 2 cut(s) 265, 775
BstKTI GATC 4 cut(s) 135, 175, 205, 351
BstMAI GTCTC 2 cut(s) 398, 677
BstMBI GATC 4 cut(s) 132, 172, 202, 348
BstMWI GCNNNNNNNGC 7 cut(s) 317, 340, 353, 376, 464, 573, 602
BstSFI CTRYAG 1 cut(s) 329
BstSLI GKGCMC 2 cut(s) 226, 540
BstUI CGCG 2 cut(s) 265, 775
BstV1I GCAGC 3 cut(s) 321, 343, 369
BsuRI GGCC 4 cut(s) 89, 271, 327, 452
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 507
Cac8I GCNNGC 4 cut(s) 313, 345, 361, 565
CaiI CAGNNNCTG 2 cut(s) 382, 489
Cfr10I RCCGGY 1 cut(s) 817
Cfr13I GGNCC 2 cut(s) 274, 815
CspAI ACCGGT 1 cut(s) 817
CviAII CATG 3 cut(s) 11, 253, 573
DpnI GATC 4 cut(s) 134, 174, 204, 350
DpnII GATC 4 cut(s) 132, 172, 202, 348
DrdI GACNNNNNNGTC 1 cut(s) 783
DseDI GACNNNNNNGTC 1 cut(s) 783
EaeI YGGCCR 3 cut(s) 87, 269, 450
Eam1104I CTCTTC 2 cut(s) 145, 583
EarI CTCTTC 2 cut(s) 145, 583
Eco147I AGGCCT 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 677
Eco47I GGWCC 2 cut(s) 274, 815
Eco72I CACGTG 1 cut(s) 515
FaeI CATG 3 cut(s) 14, 256, 576
FaqI GGGAC 1 cut(s) 828
FatI CATG 3 cut(s) 10, 252, 572
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 4 cut(s) 335, 357, 380, 383
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 4 cut(s) 335, 357, 380, 383
FspBI CTAG 6 cut(s) 144, 308, 321, 344, 645, 698
GluI GCNGC 4 cut(s) 335, 357, 380, 383
GsaI CCCAGC 1 cut(s) 343
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 4 cut(s) 89, 271, 327, 452
HapII CCGG 2 cut(s) 272, 818
Hin1II CATG 3 cut(s) 14, 256, 576
HincII GTYRAC 1 cut(s) 823
HindII GTYRAC 1 cut(s) 823
HindIII AAGCTT 1 cut(s) 789
HinfI GANTC 3 cut(s) 137, 701, 709
HpaI GTTAAC 1 cut(s) 823
HpaII CCGG 2 cut(s) 272, 818
HphI GGTGA 4 cut(s) 182, 254, 260, 641
Hpy166II GTNNAC 2 cut(s) 224, 823
Hpy188I TCNGA 2 cut(s) 177, 614
Hpy188III TCNNGA 6 cut(s) 144, 200, 397, 503, 698, 799
Hpy8I GTNNAC 2 cut(s) 224, 823
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 3 cut(s) 416, 464, 769
HpyCH4IV ACGT 3 cut(s) 470, 514, 607
HpyCH4V TGCA 4 cut(s) 20, 224, 385, 605
HpyF10VI GCNNNNNNNGC 7 cut(s) 317, 340, 353, 376, 464, 573, 602
HpySE526I ACGT 3 cut(s) 470, 514, 607
Hsp92II CATG 3 cut(s) 14, 256, 576
Ksp22I TGATCA 1 cut(s) 202
KspAI GTTAAC 1 cut(s) 823
Kzo9I GATC 4 cut(s) 132, 172, 202, 348
LguI GCTCTTC 1 cut(s) 583
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 8 cut(s) 285, 353, 410, 488, 496, 555, 642, 831
Lsp1109I GCAGC 3 cut(s) 321, 343, 369
MaeI CTAG 6 cut(s) 144, 308, 321, 344, 645, 698
MaeII ACGT 3 cut(s) 470, 514, 607
MaeIII GTNAC 4 cut(s) 248, 485, 647, 769
MalI GATC 4 cut(s) 134, 174, 204, 350
MboI GATC 4 cut(s) 132, 172, 202, 348
MboII GAAGA 6 cut(s) 39, 132, 466, 520, 523, 570
MfeI CAATTG 1 cut(s) 446
MhlI GDGCHC 2 cut(s) 226, 540
MlsI TGGCCA 2 cut(s) 89, 452
MluCI AATT 3 cut(s) 72, 194, 446
MluNI TGGCCA 2 cut(s) 89, 452
MlyI GAGTC 3 cut(s) 131, 695, 718
Mox20I TGGCCA 2 cut(s) 89, 452
MscI TGGCCA 2 cut(s) 89, 452
MseI TTAA 2 cut(s) 75, 822
MslI CAYNNNNRTG 2 cut(s) 15, 265
Msp20I TGGCCA 2 cut(s) 89, 452
MspA1I CMGCKG 2 cut(s) 334, 382
MspI CCGG 2 cut(s) 272, 818
MunI CAATTG 1 cut(s) 446
Mva1269I GAATGC 1 cut(s) 437
MvnI CGCG 2 cut(s) 265, 775
MwoI GCNNNNNNNGC 7 cut(s) 317, 340, 353, 376, 464, 573, 602
NdeII GATC 4 cut(s) 132, 172, 202, 348
NheI GCTAGC 1 cut(s) 343
NlaIII CATG 3 cut(s) 14, 256, 576
NlaIV GGNNCC 3 cut(s) 276, 539, 816
NmuCI GTSAC 2 cut(s) 248, 647
NspV TTCGAA 1 cut(s) 477
PceI AGGCCT 1 cut(s) 327
PciSI GCTCTTC 1 cut(s) 583
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PctI GAATGC 1 cut(s) 437
PinAI ACCGGT 1 cut(s) 817
PkrI GCNGC 4 cut(s) 336, 358, 381, 384
PleI GAGTC 3 cut(s) 131, 695, 717
PmaCI CACGTG 1 cut(s) 515
PmlI CACGTG 1 cut(s) 515
PpsI GAGTC 3 cut(s) 131, 695, 717
Ppu21I YACGTR 1 cut(s) 515
PshBI ATTAAT 1 cut(s) 75
PspCI CACGTG 1 cut(s) 515
PspFI CCCAGC 1 cut(s) 339
PspN4I GGNNCC 3 cut(s) 276, 539, 816
PspPI GGNCC 2 cut(s) 274, 815
PstNI CAGNNNCTG 2 cut(s) 382, 489
PvuII CAGCTG 1 cut(s) 334
RseI CAYNNNNRTG 2 cut(s) 15, 265
SapI GCTCTTC 1 cut(s) 583
SaqAI TTAA 2 cut(s) 75, 822
SatI GCNGC 4 cut(s) 335, 357, 380, 383
Sau3AI GATC 4 cut(s) 132, 172, 202, 348
Sau96I GGNCC 2 cut(s) 274, 815
SchI GAGTC 3 cut(s) 131, 695, 718
SduI GDGCHC 2 cut(s) 226, 540
SfcI CTRYAG 1 cut(s) 329
SfuI TTCGAA 1 cut(s) 477
SinI GGWCC 2 cut(s) 274, 815
SmiMI CAYNNNNRTG 2 cut(s) 15, 265
Sse9I AATT 3 cut(s) 72, 194, 446
SseBI AGGCCT 1 cut(s) 327
SsiI CCGC 5 cut(s) 265, 380, 456, 730, 737
SspMI CTAG 6 cut(s) 144, 308, 321, 344, 645, 698
StuI AGGCCT 1 cut(s) 327
TaaI ACNGT 3 cut(s) 416, 464, 769
TaiI ACGT 3 cut(s) 473, 517, 610
TaqI TCGA 4 cut(s) 135, 419, 477, 559
TasI AATT 3 cut(s) 72, 194, 446
TauI GCSGC 1 cut(s) 382
Tru1I TTAA 2 cut(s) 75, 822
Tru9I TTAA 2 cut(s) 75, 822
TseFI GTSAC 2 cut(s) 248, 647
TseI GCWGC 3 cut(s) 334, 356, 382
Tsp45I GTSAC 2 cut(s) 248, 647
TspDTI ATGAA 2 cut(s) 129, 300
TspGWI ACGGA 1 cut(s) 310
VneI GTGCAC 1 cut(s) 222
VpaK11BI GGWCC 2 cut(s) 274, 815
VspI ATTAAT 1 cut(s) 75
XbaI TCTAGA 2 cut(s) 143, 697
XspI CTAG 6 cut(s) 144, 308, 321, 344, 645, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.