Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0014857

Physical Location & Seq

Genomic Coordinates Reverse (-)

34527504 .. 34533399

Gene Structure 5896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG313100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGTTGCACATGAGAGTGCAATGAGAAGATTATTCGTTATTTCGGTAATGGAGGGTCATATACAAACACTAATTAATAAAGGGTGGCCAAAAGGAATGGTTGCTGATGAACAACGAGGGGTGGAGACTTTTCTGGATTACTCTGTTTCTTGTAAAGATGGTGATCGGATTGGGGTAGAGCTTCAATTTCTTGATCACACGGCGAGTGATGGTGCACAAGTCGGTGGTTGTGGTGATGGTGACATGACCTACTGCGGTGGCCGGACCCTGACGGTGAAGGAGGACGGAGGGAGCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.66

Weight (kDa)

4.73

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014857)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0255591 RchiOBHm_Chr7g0201351
rosa_laevigata	RLG00000034031
rosa_multiflora	Rmu_sc0007618.1_g000021 Rmu_sc0011008.1_g000002
rosa_roxburghii	Rroxscaffold_1G00039500 Rroxscaffold_4G00299840 Rroxscaffold_6G00398260
rosa_samantha	Rh2CG513300 Rh5CG201100 Rh5CG313100 Rh6BG226600 Rh6CG229200 Rh6DG220300 Rh7BG289100 Rh7BG444400
rosa_wichuraiana	Rw4G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	255
AcoI	YGGCCR	2 cut(s)	86, 259
AgsI	TTSAA	1 cut(s)	185
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	119
Alw44I	GTGCAC	1 cut(s)	213
AoxI	GGCC	2 cut(s)	86, 259
ApaLI	GTGCAC	1 cut(s)	213
AseI	ATTAAT	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	4 cut(s)	173, 245, 251, 286
AvaII	GGWCC	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	217
BccI	CCATC	3 cut(s)	152, 203, 230
BceAI	ACGGC	1 cut(s)	216
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	162
BseJI	GATNNNNATC	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	217
BshFI	GGCC	2 cut(s)	88, 261
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	88, 261
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	163, 193
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	2 cut(s)	88, 261
BspLI	GGNNCC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	27
BssMI	GATC	2 cut(s)	163, 193
Bst4CI	ACNGT	1 cut(s)	274
BstKTI	GATC	2 cut(s)	166, 196
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	2 cut(s)	163, 193
BstSLI	GKGCMC	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	88, 261
Cfr13I	GGNCC	1 cut(s)	264
CviAII	CATG	2 cut(s)	11, 244
CviJI	RGCY	3 cut(s)	88, 181, 261
CviKI_1	RGCY	3 cut(s)	88, 181, 261
DpnI	GATC	2 cut(s)	165, 195
DpnII	GATC	2 cut(s)	163, 193
EaeI	YGGCCR	2 cut(s)	86, 259
Eco47I	GGWCC	1 cut(s)	264
FaeI	CATG	2 cut(s)	14, 247
FaiI	YATR	4 cut(s)	12, 60, 62, 245
FatI	CATG	2 cut(s)	10, 243
FbaI	TGATCA	1 cut(s)	193
FspBI	CTAG	1 cut(s)	298
HaeIII	GGCC	2 cut(s)	88, 261
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	2 cut(s)	14, 247
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	4 cut(s)	173, 245, 251, 286
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	2 cut(s)	134, 191
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	8, 20, 215
Hsp92II	CATG	2 cut(s)	14, 247
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	163, 193
LmnI	GCTCC	1 cut(s)	291
LpnPI	CCDG	3 cut(s)	119, 275, 281
MaeI	CTAG	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	2 cut(s)	165, 195
MboI	GATC	2 cut(s)	163, 193
MboII	GAAGA	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	88
MluCI	AATT	2 cut(s)	72, 185
MluNI	TGGCCA	1 cut(s)	88
MnlI	CCTC	4 cut(s)	46, 110, 274, 281
Mox20I	TGGCCA	1 cut(s)	88
MscI	TGGCCA	1 cut(s)	88
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	88
MspI	CCGG	1 cut(s)	262
NdeII	GATC	2 cut(s)	163, 193
NlaIII	CATG	2 cut(s)	14, 247
NlaIV	GGNNCC	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PshBI	ATTAAT	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	264
RseI	CAYNNNNRTG	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	163, 193
Sau96I	GGNCC	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	2 cut(s)	183, 251
SinI	GGWCC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	2 cut(s)	72, 185
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	274
TasI	AATT	2 cut(s)	72, 185
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	1 cut(s)	300
VneI	GTGCAC	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	264
VspI	ATTAAT	1 cut(s)	75
XspI	CTAG	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.